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Items: 1 to 50 of 295

1.

Australian vegetated coastal ecosystems as global hotspots for climate change mitigation.

Serrano O, Lovelock CE, B Atwood T, Macreadie PI, Canto R, Phinn S, Arias-Ortiz A, Bai L, Baldock J, Bedulli C, Carnell P, Connolly RM, Donaldson P, Esteban A, Ewers Lewis CJ, Eyre BD, Hayes MA, Horwitz P, Hutley LB, Kavazos CRJ, Kelleway JJ, Kendrick GA, Kilminster K, Lafratta A, Lee S, Lavery PS, Maher DT, Marbà N, Masque P, Mateo MA, Mount R, Ralph PJ, Roelfsema C, Rozaimi M, Ruhon R, Salinas C, Samper-Villarreal J, Sanderman J, J Sanders C, Santos I, Sharples C, Steven ADL, Cannard T, Trevathan-Tackett SM, Duarte CM.

Nat Commun. 2019 Oct 2;10(1):4313. doi: 10.1038/s41467-019-12176-8.

2.

Transcriptome profiling analysis of the seagrass, Zostera muelleri under copper stress.

Shah Mohammadi N, Buapet P, Pernice M, Signal B, Kahlke T, Hardke L, Ralph PJ.

Mar Pollut Bull. 2019 Sep 26;149:110556. doi: 10.1016/j.marpolbul.2019.110556. [Epub ahead of print]

PMID:
31546108
3.

A guide to Open-JIP, a low-cost open-source chlorophyll fluorometer.

Bates H, Zavafer A, Szabó M, Ralph PJ.

Photosynth Res. 2019 Sep 20. doi: 10.1007/s11120-019-00673-2. [Epub ahead of print]

PMID:
31541419
4.

Limits to Genomic Divergence Under Sexually Antagonistic Selection.

Kasimatis KR, Ralph PL, Phillips PC.

G3 (Bethesda). 2019 Sep 17. pii: g3.400711.2019. doi: 10.1534/g3.119.400711. [Epub ahead of print]

5.

Transcriptomic investigation into polyketide toxin synthesis in Ostreopsis (Dinophyceae) species.

Verma A, Kohli GS, Harwood DT, Ralph PJ, Murray SA.

Environ Microbiol. 2019 Aug 15. doi: 10.1111/1462-2920.14780. [Epub ahead of print]

PMID:
31415128
6.

Microalgal bioremediation of emerging contaminants - Opportunities and challenges.

Sutherland DL, Ralph PJ.

Water Res. 2019 Nov 1;164:114921. doi: 10.1016/j.watres.2019.114921. Epub 2019 Jul 27. Review.

PMID:
31382151
7.

Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers.

Stankowski S, Chase MA, Fuiten AM, Rodrigues MF, Ralph PL, Streisfeld MA.

PLoS Biol. 2019 Jul 24;17(7):e3000391. doi: 10.1371/journal.pbio.3000391. eCollection 2019 Jul.

8.

Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants.

Yang Z, Wafula EK, Kim G, Shahid S, McNeal JR, Ralph PE, Timilsena PR, Yu WB, Kelly EA, Zhang H, Person TN, Altman NS, Axtell MJ, Westwood JH, dePamphilis CW.

Nat Plants. 2019 Sep;5(9):991-1001. doi: 10.1038/s41477-019-0458-0. Epub 2019 Jul 22.

PMID:
31332314
9.

Effect of reduced irradiance on 13C uptake, gene expression and protein activity of the seagrass Zostera muelleri.

Kim M, Pernice M, Watson-Lazowski A, Guagliardo P, Kilburn MR, Larkum AWD, Raven JA, Ralph PJ.

Mar Environ Res. 2019 Aug;149:80-89. doi: 10.1016/j.marenvres.2019.06.004. Epub 2019 Jun 6.

PMID:
31181418
10.

Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome.

Hurtado-McCormick V, Kahlke T, Petrou K, Jeffries T, Ralph PJ, Seymour JR.

Front Microbiol. 2019 May 14;10:1011. doi: 10.3389/fmicb.2019.01011. eCollection 2019.

11.

Are populations like a circuit? Comparing isolation by resistance to a new coalescent-based method.

Lundgren E, Ralph PL.

Mol Ecol Resour. 2019 May 16. doi: 10.1111/1755-0998.13035. [Epub ahead of print]

PMID:
31099173
12.

Phytosterol biosynthesis and production by diatoms (Bacillariophyceae).

Jaramillo-Madrid AC, Ashworth J, Fabris M, Ralph PJ.

Phytochemistry. 2019 Jul;163:46-57. doi: 10.1016/j.phytochem.2019.03.018. Epub 2019 Apr 19. Review.

PMID:
31005802
13.

An empirical approach to demographic inference with genomic data.

Ralph PL.

Theor Popul Biol. 2019 Jun;127:91-101. doi: 10.1016/j.tpb.2019.03.005. Epub 2019 Apr 9.

PMID:
30978307
14.

Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes.

Haller BC, Galloway J, Kelleher J, Messer PW, Ralph PL.

Mol Ecol Resour. 2019 Mar;19(2):552-566. doi: 10.1111/1755-0998.12968. Epub 2019 Feb 21.

PMID:
30565882
15.

Excess copper promotes photoinhibition and modulates the expression of antioxidant-related genes in Zostera muelleri.

Buapet P, Mohammadi NS, Pernice M, Kumar M, Kuzhiumparambil U, Ralph PJ.

Aquat Toxicol. 2019 Feb;207:91-100. doi: 10.1016/j.aquatox.2018.12.005. Epub 2018 Dec 5.

PMID:
30553148
16.

Local PCA Shows How the Effect of Population Structure Differs Along the Genome.

Li H, Ralph P.

Genetics. 2019 Jan;211(1):289-304. doi: 10.1534/genetics.118.301747. Epub 2018 Nov 20.

PMID:
30459280
17.

Efficient pedigree recording for fast population genetics simulation.

Kelleher J, Thornton KR, Ashander J, Ralph PL.

PLoS Comput Biol. 2018 Nov 1;14(11):e1006581. doi: 10.1371/journal.pcbi.1006581. eCollection 2018 Nov.

18.

Roadmaps and Detours: Active Chlorophyll- a Assessments of Primary Productivity Across Marine and Freshwater Systems.

Hughes DJ, Campbell DA, Doblin MA, Kromkamp JC, Lawrenz E, Moore CM, Oxborough K, Prášil O, Ralph PJ, Alvarez MF, Suggett DJ.

Environ Sci Technol. 2018 Nov 6;52(21):12039-12054. doi: 10.1021/acs.est.8b03488. Epub 2018 Oct 5.

19.

Inferring Continuous and Discrete Population Genetic Structure Across Space.

Bradburd GS, Coop GM, Ralph PL.

Genetics. 2018 Sep;210(1):33-52. doi: 10.1534/genetics.118.301333. Epub 2018 Jul 19.

20.

Thermal niche evolution of functional traits in a tropical marine phototroph.

Baker KG, Radford DT, Evenhuis C, Kuzhiumparam U, Ralph PJ, Doblin MA.

J Phycol. 2018 Dec;54(6):799-810. doi: 10.1111/jpy.12759. Epub 2018 Aug 13.

PMID:
29901841
21.

Atopic Dermatitis Linked Cytokine Interleukin-31 Induced Itch Mediated via a Neuropeptide Natriuretic Polypeptide B.

Pitake S, Ralph PC, DeBrecht J, Mishra SK.

Acta Derm Venereol. 2018 Aug 29;98(8):795-796. doi: 10.2340/00015555-2977. No abstract available.

22.

Seagrass rhizosphere microenvironment alters plant-associated microbial community composition.

Brodersen KE, Siboni N, Nielsen DA, Pernice M, Ralph PJ, Seymour J, Kühl M.

Environ Microbiol. 2018 Aug;20(8):2854-2864. doi: 10.1111/1462-2920.14245. Epub 2018 May 21.

PMID:
29687545
23.

Living at the margins - The response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts.

Chartrand KM, Szabó M, Sinutok S, Rasheed MA, Ralph PJ.

Mar Environ Res. 2018 May;136:126-138. doi: 10.1016/j.marenvres.2018.02.006. Epub 2018 Feb 12.

PMID:
29503105
24.

Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata.

Zavřel T, Szabó M, Tamburic B, Evenhuis C, Kuzhiumparambil U, Literáková P, Larkum AWD, Raven JA, Červený J, Ralph PJ.

J Photochem Photobiol B. 2018 Apr;181:31-43. doi: 10.1016/j.jphotobiol.2018.02.020. Epub 2018 Feb 21.

PMID:
29486460
25.

Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).

Schrameyer V, York PH, Chartrand K, Ralph PJ, Kühl M, Brodersen KE, Rasheed MA.

Mar Environ Res. 2018 May;136:38-47. doi: 10.1016/j.marenvres.2018.02.008. Epub 2018 Feb 12.

PMID:
29472034
26.

SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants.

Sablok G, Hayward RJ, Davey PA, Santos RP, Schliep M, Larkum A, Pernice M, Dolferus R, Ralph PJ.

Sci Rep. 2018 Feb 9;8(1):2749. doi: 10.1038/s41598-017-18782-0.

27.

Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium) Across Different Types (Species) Under Alternate Light and Temperature Conditions.

Fujise L, Nitschke MR, Frommlet JC, Serôdio J, Woodcock S, Ralph PJ, Suggett DJ.

J Eukaryot Microbiol. 2018 Jul;65(4):505-517. doi: 10.1111/jeu.12497. Epub 2018 Feb 1.

PMID:
29316019
28.

A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri.

Davey PA, Pernice M, Ashworth J, Kuzhiumparambil U, Szabó M, Dolferus R, Ralph PJ.

Mar Environ Res. 2018 Mar;134:55-67. doi: 10.1016/j.marenvres.2017.12.012. Epub 2017 Dec 24.

PMID:
29307464
29.

A multi-trait systems approach reveals a response cascade to bleaching in corals.

Gardner SG, Raina JB, Nitschke MR, Nielsen DA, Stat M, Motti CA, Ralph PJ, Petrou K.

BMC Biol. 2017 Dec 7;15(1):117. doi: 10.1186/s12915-017-0459-2.

30.

Fresh carbon inputs to seagrass sediments induce variable microbial priming responses.

Trevathan-Tackett SM, Thomson ACG, Ralph PJ, Macreadie PI.

Sci Total Environ. 2018 Apr 15;621:663-669. doi: 10.1016/j.scitotenv.2017.11.193. Epub 2017 Dec 1.

PMID:
29197285
31.

Impact of Flue Gas Compounds on Microalgae and Mechanisms for Carbon Assimilation and Utilization.

Vuppaladadiyam AK, Yao JG, Florin N, George A, Wang X, Labeeuw L, Jiang Y, Davis RW, Abbas A, Ralph P, Fennell PS, Zhao M.

ChemSusChem. 2018 Jan 23;11(2):334-355. doi: 10.1002/cssc.201701611. Epub 2018 Jan 15. Review.

PMID:
29165921
32.

Seagrass-Mediated Phosphorus and Iron Solubilization in Tropical Sediments.

Brodersen KE, Koren K, Moßhammer M, Ralph PJ, Kühl M, Santner J.

Environ Sci Technol. 2017 Dec 19;51(24):14155-14163. doi: 10.1021/acs.est.7b03878. Epub 2017 Dec 6.

33.

Low oxygen affects photophysiology and the level of expression of two-carbon metabolism genes in the seagrass Zostera muelleri.

Kim M, Brodersen KE, Szabó M, Larkum AWD, Raven JA, Ralph PJ, Pernice M.

Photosynth Res. 2018 May;136(2):147-160. doi: 10.1007/s11120-017-0452-1. Epub 2017 Oct 4.

PMID:
28980125
34.

Carbon-concentrating mechanisms in seagrasses.

Larkum AWD, Davey PA, Kuo J, Ralph PJ, Raven JA.

J Exp Bot. 2017 Jun 1;68(14):3773-3784. doi: 10.1093/jxb/erx206. Review.

PMID:
28911056
35.

Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds.

Tout J, Astudillo-García C, Taylor MW, Tyson GW, Stocker R, Ralph PJ, Seymour JR, Webster NS.

Environ Microbiol Rep. 2017 Dec;9(6):750-755. doi: 10.1111/1758-2229.12591. Epub 2017 Oct 13.

PMID:
28892304
36.

Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis.

Jiang Z, Kumar M, Padula MP, Pernice M, Kahlke T, Kim M, Ralph PJ.

Front Plant Sci. 2017 Aug 15;8:1416. doi: 10.3389/fpls.2017.01416. eCollection 2017.

37.

A Global Assessment of the Chemical Recalcitrance of Seagrass Tissues: Implications for Long-Term Carbon Sequestration.

Trevathan-Tackett SM, Macreadie PI, Sanderman J, Baldock J, Howes JM, Ralph PJ.

Front Plant Sci. 2017 Jun 13;8:925. doi: 10.3389/fpls.2017.00925. eCollection 2017.

38.

Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion.

Brodersen KE, Hammer KJ, Schrameyer V, Floytrup A, Rasheed MA, Ralph PJ, Kühl M, Pedersen O.

Front Plant Sci. 2017 May 9;8:657. doi: 10.3389/fpls.2017.00657. eCollection 2017.

39.

Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures.

Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P.

Am Nat. 2017 May;189(5):463-473. doi: 10.1086/691233. Epub 2017 Mar 17. Review.

PMID:
28410032
40.

Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalis.

Wilkinson AD, Collier CJ, Flores F, Langlois L, Ralph PJ, Negri AP.

Sci Rep. 2017 Mar 30;7:45404. doi: 10.1038/srep45404.

41.

Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions.

Trevathan-Tackett SM, Seymour JR, Nielsen DA, Macreadie PI, Jeffries TC, Sanderman J, Baldock J, Howes JM, Steven ADL, Ralph PJ.

FEMS Microbiol Ecol. 2017 Jun 1;93(6). doi: 10.1093/femsec/fix033.

PMID:
28334391
42.

Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress.

Gardner SG, Raina JB, Ralph PJ, Petrou K.

J Exp Biol. 2017 May 15;220(Pt 10):1787-1791. doi: 10.1242/jeb.153049. Epub 2017 Mar 8.

43.

In vivo Microscale Measurements of Light and Photosynthesis during Coral Bleaching: Evidence for the Optical Feedback Loop?

Wangpraseurt D, Holm JB, Larkum AW, Pernice M, Ralph PJ, Suggett DJ, Kühl M.

Front Microbiol. 2017 Jan 24;8:59. doi: 10.3389/fmicb.2017.00059. eCollection 2017.

44.

Proteome Analysis Reveals Extensive Light Stress-Response Reprogramming in the Seagrass Zostera muelleri (Alismatales, Zosteraceae) Metabolism.

Kumar M, Padula MP, Davey P, Pernice M, Jiang Z, Sablok G, Contreras-Porcia L, Ralph PJ.

Front Plant Sci. 2017 Jan 17;7:2023. doi: 10.3389/fpls.2016.02023. eCollection 2016.

45.

A novel mechanism for host-mediated photoprotection in endosymbiotic foraminifera.

Petrou K, Ralph PJ, Nielsen DA.

ISME J. 2017 Feb;11(2):453-462. doi: 10.1038/ismej.2016.128. Epub 2016 Nov 1.

46.

Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Yang Z, Zhang Y, Wafula EK, Honaas LA, Ralph PE, Jones S, Clarke CR, Liu S, Su C, Zhang H, Altman NS, Schuster SC, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7010-E7019. doi: 10.1073/pnas.1608765113. Epub 2016 Oct 24.

47.

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers.

Sablok G, Pérez-Pulido AJ, Do T, Seong TY, Casimiro-Soriguer CS, La Porta N, Ralph PJ, Squartini A, Muñoz-Merida A, Harikrishna JA.

Front Plant Sci. 2016 Jun 27;7:878. doi: 10.3389/fpls.2016.00878. eCollection 2016.

48.

The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.

Davey PA, Pernice M, Sablok G, Larkum A, Lee HT, Golicz A, Edwards D, Dolferus R, Ralph P.

Funct Integr Genomics. 2016 Sep;16(5):465-80. doi: 10.1007/s10142-016-0501-4. Epub 2016 Jul 21. Review.

PMID:
27443314
49.

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Sablok G, Krishnaraj RR, Chan CK, Batley J, Kendrick GA, Larkum AW, Ralph PJ, Edwards D.

Plant Physiol. 2016 Sep;172(1):272-83. doi: 10.1104/pp.16.00868. Epub 2016 Jul 3.

50.

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