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Thermal niche evolution of functional traits in a tropical marine phototroph.

Baker KG, Radford DT, Evenhuis C, Kuzhiumparam U, Ralph PJ, Doblin MA.

J Phycol. 2018 Jun 14. doi: 10.1111/jpy.12759. [Epub ahead of print]


Atopic Dermatitis Linked Cytokine Interleukin-31 Induced Itch Mediated via a Neuropeptide Natriuretic Polypeptide B.

Pitake S, Ralph PC, DeBrecht J, Mishra SK.

Acta Derm Venereol. 2018 May 24. doi: 10.2340/00015555-2977. [Epub ahead of print] No abstract available.


Seagrass rhizosphere microenvironment alters plant-associated microbial community composition.

Brodersen KE, Siboni N, Nielsen DA, Pernice M, Ralph PJ, Seymour J, Kühl M.

Environ Microbiol. 2018 Apr 24. doi: 10.1111/1462-2920.14245. [Epub ahead of print]


Living at the margins - The response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts.

Chartrand KM, Szabó M, Sinutok S, Rasheed MA, Ralph PJ.

Mar Environ Res. 2018 May;136:126-138. doi: 10.1016/j.marenvres.2018.02.006. Epub 2018 Feb 12.


Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata.

Zavřel T, Szabó M, Tamburic B, Evenhuis C, Kuzhiumparambil U, Literáková P, Larkum AWD, Raven JA, Červený J, Ralph PJ.

J Photochem Photobiol B. 2018 Apr;181:31-43. doi: 10.1016/j.jphotobiol.2018.02.020. Epub 2018 Feb 21.


Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef).

Schrameyer V, York PH, Chartrand K, Ralph PJ, Kühl M, Brodersen KE, Rasheed MA.

Mar Environ Res. 2018 May;136:38-47. doi: 10.1016/j.marenvres.2018.02.008. Epub 2018 Feb 12.


SeagrassDB: An open-source transcriptomics landscape for phylogenetically profiled seagrasses and aquatic plants.

Sablok G, Hayward RJ, Davey PA, Santos RP, Schliep M, Larkum A, Pernice M, Dolferus R, Ralph PJ.

Sci Rep. 2018 Feb 9;8(1):2749. doi: 10.1038/s41598-017-18782-0.


Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium) Across Different Types (Species) Under Alternate Light and Temperature Conditions.

Fujise L, Nitschke MR, Frommlet JC, Serôdio J, Woodcock S, Ralph PJ, Suggett DJ.

J Eukaryot Microbiol. 2018 Jul;65(4):505-517. doi: 10.1111/jeu.12497. Epub 2018 Feb 1.


A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri.

Davey PA, Pernice M, Ashworth J, Kuzhiumparambil U, Szabó M, Dolferus R, Ralph PJ.

Mar Environ Res. 2018 Mar;134:55-67. doi: 10.1016/j.marenvres.2017.12.012. Epub 2017 Dec 24.


A multi-trait systems approach reveals a response cascade to bleaching in corals.

Gardner SG, Raina JB, Nitschke MR, Nielsen DA, Stat M, Motti CA, Ralph PJ, Petrou K.

BMC Biol. 2017 Dec 7;15(1):117. doi: 10.1186/s12915-017-0459-2.


Fresh carbon inputs to seagrass sediments induce variable microbial priming responses.

Trevathan-Tackett SM, Thomson ACG, Ralph PJ, Macreadie PI.

Sci Total Environ. 2018 Apr 15;621:663-669. doi: 10.1016/j.scitotenv.2017.11.193. Epub 2017 Dec 1.


Impact of Flue Gas Compounds on Microalgae and Mechanisms for Carbon Assimilation and Utilization.

Vuppaladadiyam AK, Yao JG, Florin N, George A, Wang X, Labeeuw L, Jiang Y, Davis RW, Abbas A, Ralph P, Fennell PS, Zhao M.

ChemSusChem. 2018 Jan 23;11(2):334-355. doi: 10.1002/cssc.201701611. Epub 2018 Jan 15. Review.


Seagrass-Mediated Phosphorus and Iron Solubilization in Tropical Sediments.

Brodersen KE, Koren K, Moßhammer M, Ralph PJ, Kühl M, Santner J.

Environ Sci Technol. 2017 Dec 19;51(24):14155-14163. doi: 10.1021/acs.est.7b03878. Epub 2017 Dec 6.


Low oxygen affects photophysiology and the level of expression of two-carbon metabolism genes in the seagrass Zostera muelleri.

Kim M, Brodersen KE, Szabó M, Larkum AWD, Raven JA, Ralph PJ, Pernice M.

Photosynth Res. 2018 May;136(2):147-160. doi: 10.1007/s11120-017-0452-1. Epub 2017 Oct 4.


Carbon-concentrating mechanisms in seagrasses.

Larkum AWD, Davey PA, Kuo J, Ralph PJ, Raven JA.

J Exp Bot. 2017 Jun 1;68(14):3773-3784. doi: 10.1093/jxb/erx206. Review.


Redefining the sponge-symbiont acquisition paradigm: sponge microbes exhibit chemotaxis towards host-derived compounds.

Tout J, Astudillo-García C, Taylor MW, Tyson GW, Stocker R, Ralph PJ, Seymour JR, Webster NS.

Environ Microbiol Rep. 2017 Dec;9(6):750-755. doi: 10.1111/1758-2229.12591. Epub 2017 Oct 13.


Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis.

Jiang Z, Kumar M, Padula MP, Pernice M, Kahlke T, Kim M, Ralph PJ.

Front Plant Sci. 2017 Aug 15;8:1416. doi: 10.3389/fpls.2017.01416. eCollection 2017.


A Global Assessment of the Chemical Recalcitrance of Seagrass Tissues: Implications for Long-Term Carbon Sequestration.

Trevathan-Tackett SM, Macreadie PI, Sanderman J, Baldock J, Howes JM, Ralph PJ.

Front Plant Sci. 2017 Jun 13;8:925. doi: 10.3389/fpls.2017.00925. eCollection 2017.


Sediment Resuspension and Deposition on Seagrass Leaves Impedes Internal Plant Aeration and Promotes Phytotoxic H2S Intrusion.

Brodersen KE, Hammer KJ, Schrameyer V, Floytrup A, Rasheed MA, Ralph PJ, Kühl M, Pedersen O.

Front Plant Sci. 2017 May 9;8:657. doi: 10.3389/fpls.2017.00657. eCollection 2017.


Predicting Responses to Contemporary Environmental Change Using Evolutionary Response Architectures.

Bay RA, Rose N, Barrett R, Bernatchez L, Ghalambor CK, Lasky JR, Brem RB, Palumbi SR, Ralph P.

Am Nat. 2017 May;189(5):463-473. doi: 10.1086/691233. Epub 2017 Mar 17. Review.


Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalis.

Wilkinson AD, Collier CJ, Flores F, Langlois L, Ralph PJ, Negri AP.

Sci Rep. 2017 Mar 30;7:45404. doi: 10.1038/srep45404.


Sediment anoxia limits microbial-driven seagrass carbon remineralization under warming conditions.

Trevathan-Tackett SM, Seymour JR, Nielsen DA, Macreadie PI, Jeffries TC, Sanderman J, Baldock J, Howes JM, Steven ADL, Ralph PJ.

FEMS Microbiol Ecol. 2017 Jun 1;93(6). doi: 10.1093/femsec/fix033.


Reactive oxygen species (ROS) and dimethylated sulphur compounds in coral explants under acute thermal stress.

Gardner SG, Raina JB, Ralph PJ, Petrou K.

J Exp Biol. 2017 May 15;220(Pt 10):1787-1791. doi: 10.1242/jeb.153049. Epub 2017 Mar 8.


In vivo Microscale Measurements of Light and Photosynthesis during Coral Bleaching: Evidence for the Optical Feedback Loop?

Wangpraseurt D, Holm JB, Larkum AW, Pernice M, Ralph PJ, Suggett DJ, Kühl M.

Front Microbiol. 2017 Jan 24;8:59. doi: 10.3389/fmicb.2017.00059. eCollection 2017.


Proteome Analysis Reveals Extensive Light Stress-Response Reprogramming in the Seagrass Zostera muelleri (Alismatales, Zosteraceae) Metabolism.

Kumar M, Padula MP, Davey P, Pernice M, Jiang Z, Sablok G, Contreras-Porcia L, Ralph PJ.

Front Plant Sci. 2017 Jan 17;7:2023. doi: 10.3389/fpls.2016.02023. eCollection 2016.


A novel mechanism for host-mediated photoprotection in endosymbiotic foraminifera.

Petrou K, Ralph PJ, Nielsen DA.

ISME J. 2017 Feb;11(2):453-462. doi: 10.1038/ismej.2016.128. Epub 2016 Nov 1.


Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Yang Z, Zhang Y, Wafula EK, Honaas LA, Ralph PE, Jones S, Clarke CR, Liu S, Su C, Zhang H, Altman NS, Schuster SC, Timko MP, Yoder JI, Westwood JH, dePamphilis CW.

Proc Natl Acad Sci U S A. 2016 Oct 24. pii: 201608765. [Epub ahead of print]


PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers.

Sablok G, Pérez-Pulido AJ, Do T, Seong TY, Casimiro-Soriguer CS, La Porta N, Ralph PJ, Squartini A, Muñoz-Merida A, Harikrishna JA.

Front Plant Sci. 2016 Jun 27;7:878. doi: 10.3389/fpls.2016.00878. eCollection 2016.


The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.

Davey PA, Pernice M, Sablok G, Larkum A, Lee HT, Golicz A, Edwards D, Dolferus R, Ralph P.

Funct Integr Genomics. 2016 Sep;16(5):465-80. doi: 10.1007/s10142-016-0501-4. Epub 2016 Jul 21. Review.


The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Sablok G, Krishnaraj RR, Chan CK, Batley J, Kendrick GA, Larkum AW, Ralph PJ, Edwards D.

Plant Physiol. 2016 Sep;172(1):272-83. doi: 10.1104/pp.16.00868. Epub 2016 Jul 3.


Adaptation in isolated populations: when does it happen and when can we tell?

Crisci JL, Dean MD, Ralph P.

Mol Ecol. 2016 Aug;25(16):3901-11. doi: 10.1111/mec.13729. Epub 2016 Jul 9.


Southern Ocean phytoplankton physiology in a changing climate.

Petrou K, Kranz SA, Trimborn S, Hassler CS, Ameijeiras SB, Sackett O, Ralph PJ, Davidson AT.

J Plant Physiol. 2016 Sep 20;203:135-150. doi: 10.1016/j.jplph.2016.05.004. Epub 2016 May 13. Review.


Nutrient uplift in a cyclonic eddy increases diversity, primary productivity and iron demand of microbial communities relative to a western boundary current.

Doblin MA, Petrou K, Sinutok S, Seymour JR, Messer LF, Brown MV, Norman L, Everett JD, McInnes AS, Ralph PJ, Thompson PA, Hassler CS.

PeerJ. 2016 Apr 25;4:e1973. doi: 10.7717/peerj.1973. eCollection 2016.


Beyond clines: lineages and haplotype blocks in hybrid zones.

Sedghifar A, Brandvain Y, Ralph P.

Mol Ecol. 2016 Jun;25(11):2559-76. doi: 10.1111/mec.13677.


Comparison of marine macrophytes for their contributions to blue carbon sequestration.

Trevathan-Tackett SM, Kelleway J, Macreadie PI, Beardall J, Ralph P, Bellgrove A.

Ecology. 2015 Nov;96(11):3043-57.


Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution.

Chiang CW, Ralph P, Novembre J.

G3 (Bethesda). 2016 May 3;6(5):1287-96. doi: 10.1534/g3.116.027581.


The exposure of the Great Barrier Reef to ocean acidification.

Mongin M, Baird ME, Tilbrook B, Matear RJ, Lenton A, Herzfeld M, Wild-Allen K, Skerratt J, Margvelashvili N, Robson BJ, Duarte CM, Gustafsson MS, Ralph PJ, Steven AD.

Nat Commun. 2016 Feb 23;7:10732. doi: 10.1038/ncomms10732.


"Super-quenching" state protects Symbiodinium from thermal stress - Implications for coral bleaching.

Slavov C, Schrameyer V, Reus M, Ralph PJ, Hill R, Büchel C, Larkum AW, Holzwarth AR.

Biochim Biophys Acta. 2016 Jun;1857(6):840-7. doi: 10.1016/j.bbabio.2016.02.002. Epub 2016 Feb 8.


Dimethylsulfoniopropionate, superoxide dismutase and glutathione as stress response indicators in three corals under short-term hyposalinity stress.

Gardner SG, Nielsen DA, Laczka O, Shimmon R, Beltran VH, Ralph PJ, Petrou K.

Proc Biol Sci. 2016 Feb 10;283(1824). pii: 20152418. doi: 10.1098/rspb.2015.2418.


Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary.

Jeffries TC, Schmitz Fontes ML, Harrison DP, Van-Dongen-Vogels V, Eyre BD, Ralph PJ, Seymour JR.

Front Microbiol. 2016 Jan 26;6:1438. doi: 10.3389/fmicb.2015.01438. eCollection 2015.


A Spatial Framework for Understanding Population Structure and Admixture.

Bradburd GS, Ralph PL, Coop GM.

PLoS Genet. 2016 Jan 15;12(1):e1005703. doi: 10.1371/journal.pgen.1005703. eCollection 2016 Jan.


Partitioning of fungal assemblages across different marine habitats.

Jeffries TC, Curlevski NJ, Brown MV, Harrison DP, Doblin MA, Petrou K, Ralph PJ, Seymour JR.

Environ Microbiol Rep. 2016 Apr;8(2):235-8. doi: 10.1111/1758-2229.12373. Epub 2016 Feb 16.


Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae).

Naumann J, Der JP, Wafula EK, Jones SS, Wagner ST, Honaas LA, Ralph PE, Bolin JF, Maass E, Neinhuis C, Wanke S, dePamphilis CW.

Genome Biol Evol. 2016 Jan 6;8(2):345-63. doi: 10.1093/gbe/evv256.


Molecular physiology reveals ammonium uptake and related gene expression in the seagrass Zostera muelleri.

Pernice M, Sinutok S, Sablok G, Commault AS, Schliep M, Macreadie PI, Rasheed MA, Ralph PJ.

Mar Environ Res. 2016 Dec;122:126-134. doi: 10.1016/j.marenvres.2016.10.003. Epub 2016 Oct 21.


Seventy years of continuous encroachment substantially increases 'blue carbon' capacity as mangroves replace intertidal salt marshes.

Kelleway JJ, Saintilan N, Macreadie PI, Skilbeck CG, Zawadzki A, Ralph PJ.

Glob Chang Biol. 2016 Mar;22(3):1097-109. doi: 10.1111/gcb.13158. Epub 2015 Dec 15.


The Role of Standing Variation in Geographic Convergent Adaptation.

Ralph PL, Coop G.

Am Nat. 2015 Oct;186 Suppl 1:S5-23. doi: 10.1086/682948. Epub 2015 Sep 8.


isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology.

Sablok G, Srivastva AK, Suprasanna P, Baev V, Ralph PJ.

Front Plant Sci. 2015 Nov 10;6:949. doi: 10.3389/fpls.2015.00949. eCollection 2015. No abstract available.


Evaluation of Reference Genes for RT-qPCR Studies in the Seagrass Zostera muelleri Exposed to Light Limitation.

Schliep M, Pernice M, Sinutok S, Bryant CV, York PH, Rasheed MA, Ralph PJ.

Sci Rep. 2015 Nov 23;5:17051. doi: 10.1038/srep17051.


Convergent Evolution During Local Adaptation to Patchy Landscapes.

Ralph PL, Coop G.

PLoS Genet. 2015 Nov 16;11(11):e1005630. doi: 10.1371/journal.pgen.1005630. eCollection 2015 Nov.

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