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Items: 46

1.

EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination.

Fomenkov A, Sun Z, Dila DK, Anton BP, Roberts RJ, Raleigh EA.

PLoS One. 2017 Jun 27;12(6):e0179853. doi: 10.1371/journal.pone.0179853. eCollection 2017.

2.

Rpn (YhgA-Like) Proteins of Escherichia coli K-12 and Their Contribution to RecA-Independent Horizontal Transfer.

Kingston AW, Ponkratz C, Raleigh EA.

J Bacteriol. 2017 Mar 14;199(7). pii: e00787-16. doi: 10.1128/JB.00787-16. Print 2017 Apr 1.

3.

Complete Genome Sequence of NEB 5-alpha, a Derivative of Escherichia coli K-12 DH5╬▒.

Anton BP, Raleigh EA.

Genome Announc. 2016 Nov 10;4(6). pii: e01245-16. doi: 10.1128/genomeA.01245-16.

4.
5.

Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses.

Weigele P, Raleigh EA.

Chem Rev. 2016 Oct 26;116(20):12655-12687. doi: 10.1021/acs.chemrev.6b00114. Epub 2016 Jun 20. Review.

6.

Complete Genome Sequence of the Engineered Escherichia coli SHuffle Strains and Their Wild-Type Parents.

Anton BP, Fomenkov A, Raleigh EA, Berkmen M.

Genome Announc. 2016 Mar 31;4(2). pii: e00230-16. doi: 10.1128/genomeA.00230-16.

7.

Correction: Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12.

Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.

PLoS One. 2015 Nov 30;10(11):e0143991. doi: 10.1371/journal.pone.0143991. eCollection 2015. No abstract available.

8.

Novel recA-Independent Horizontal Gene Transfer in Escherichia coli K-12.

Kingston AW, Roussel-Rossin C, Dupont C, Raleigh EA.

PLoS One. 2015 Jul 10;10(7):e0130813. doi: 10.1371/journal.pone.0130813. eCollection 2015. Erratum in: PLoS One. 2015;10(11):e0143991.

9.

Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12.

Anton BP, Mongodin EF, Agrawal S, Fomenkov A, Byrd DR, Roberts RJ, Raleigh EA.

PLoS One. 2015 May 26;10(5):e0127446. doi: 10.1371/journal.pone.0127446. eCollection 2015.

10.

Highlights of the DNA cutters: a short history of the restriction enzymes.

Loenen WA, Dryden DT, Raleigh EA, Wilson GG, Murray NE.

Nucleic Acids Res. 2014 Jan;42(1):3-19. doi: 10.1093/nar/gkt990. Epub 2013 Oct 18.

11.

Type I restriction enzymes and their relatives.

Loenen WA, Dryden DT, Raleigh EA, Wilson GG.

Nucleic Acids Res. 2014 Jan;42(1):20-44. doi: 10.1093/nar/gkt847. Epub 2013 Sep 24. Review.

12.

The other face of restriction: modification-dependent enzymes.

Loenen WA, Raleigh EA.

Nucleic Acids Res. 2014 Jan;42(1):56-69. doi: 10.1093/nar/gkt747. Epub 2013 Aug 29. Review.

13.

A versatile element for gene addition in bacterial chromosomes.

Sibley MH, Raleigh EA.

Nucleic Acids Res. 2012 Feb;40(3):e19. doi: 10.1093/nar/gkr1085. Epub 2011 Nov 28.

14.

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

Ishikawa K, Handa N, Sears L, Raleigh EA, Kobayashi I.

Nucleic Acids Res. 2011 Jul;39(13):5489-98. doi: 10.1093/nar/gkr153. Epub 2011 Mar 26.

15.

Evolution of bacterial phosphoglycerate mutases: non-homologous isofunctional enzymes undergoing gene losses, gains and lateral transfers.

Foster JM, Davis PJ, Raverdy S, Sibley MH, Raleigh EA, Kumar S, Carlow CK.

PLoS One. 2010 Oct 26;5(10):e13576. doi: 10.1371/journal.pone.0013576.

16.

Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis.

Anton BP, Russell SP, Vertrees J, Kasif S, Raleigh EA, Limbach PA, Roberts RJ.

Nucleic Acids Res. 2010 Oct;38(18):6195-205. doi: 10.1093/nar/gkq364. Epub 2010 May 14.

17.

Selected topics from classical bacterial genetics.

Raleigh EA, Elbing K, Brent R.

Curr Protoc Mol Biol. 2002 Aug;Chapter 1:Unit 1.4. doi: 10.1002/0471142727.mb0104s59.

PMID:
18265295
18.

RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.

Anton BP, Saleh L, Benner JS, Raleigh EA, Kasif S, Roberts RJ.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1826-31. doi: 10.1073/pnas.0708608105. Epub 2008 Feb 5.

19.
20.

Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives.

Sibley MH, Raleigh EA.

Nucleic Acids Res. 2004 Jan 26;32(2):522-34. Print 2004.

21.

Discovery and distribution of super-integrons among pseudomonads.

Vaisvila R, Morgan RD, Posfai J, Raleigh EA.

Mol Microbiol. 2001 Nov;42(3):587-601.

22.

Methyl-specific DNA binding by McrBC, a modification-dependent restriction enzyme.

Stewart FJ, Panne D, Bickle TA, Raleigh EA.

J Mol Biol. 2000 May 12;298(4):611-22.

PMID:
10788324
23.

A simple in vitro Tn7-based transposition system with low target site selectivity for genome and gene analysis.

Biery MC, Stewart FJ, Stellwagen AE, Raleigh EA, Craig NL.

Nucleic Acids Res. 2000 Mar 1;28(5):1067-77.

24.

Molecular evolution of the Escherichia coli chromosome. V. Recombination patterns among strains of diverse origin.

Milkman R, Raleigh EA, McKane M, Cryderman D, Bilodeau P, McWeeny K.

Genetics. 1999 Oct;153(2):539-54.

25.

The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis.

Panne D, Raleigh EA, Bickle TA.

J Mol Biol. 1999 Jul 2;290(1):49-60.

PMID:
10388557
26.

McrBs, a modulator peptide for McrBC activity.

Panne D, Raleigh EA, Bickle TA.

EMBO J. 1998 Sep 15;17(18):5477-83.

27.

Dependence of McrBC cleavage on distance between recognition elements.

Stewart FJ, Raleigh EA.

Biol Chem. 1998 Apr-May;379(4-5):611-6.

PMID:
9628366
28.

On the regulation and diversity of restriction in Escherichia coli.

Kelleher JE, Raleigh EA.

Gene. 1995 May 19;157(1-2):229-30.

PMID:
7607496
29.

Response to UV damage by four Escherichia coli K-12 restriction systems.

Kelleher JE, Raleigh EA.

J Bacteriol. 1994 Oct;176(19):5888-96.

30.

McrBC: a multisubunit GTP-dependent restriction endonuclease.

Sutherland E, Coe L, Raleigh EA.

J Mol Biol. 1992 May 20;225(2):327-48.

PMID:
1317461
31.

Organization and function of the mcrBC genes of Escherichia coli K-12.

Raleigh EA.

Mol Microbiol. 1992 May;6(9):1079-86. Review.

PMID:
1316984
32.
33.

Nomenclature relating to restriction of modified DNA in Escherichia coli.

Raleigh EA, Benner J, Bloom F, Braymer HD, DeCruz E, Dharmalingam K, Heitman J, Noyer Weidner M, Piekarowicz A, Kretz PL, et al.

J Bacteriol. 1991 Apr;173(8):2707-9.

34.

Genetic and sequence organization of the mcrBC locus of Escherichia coli K-12.

Dila D, Sutherland E, Moran L, Slatko B, Raleigh EA.

J Bacteriol. 1990 Sep;172(9):4888-900.

35.
36.

Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases.

Szybalski W, Blumenthal RM, Brooks JE, Hattman S, Raleigh EA.

Gene. 1988 Dec 25;74(1):279-80. No abstract available.

PMID:
3266859
37.

Genetic dissection of the methylcytosine-specific restriction system mcrB of Escherichia coli K-12.

Dila D, Raleigh EA.

Gene. 1988 Dec 25;74(1):23-4. No abstract available.

PMID:
2854808
38.

McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning.

Raleigh EA, Murray NE, Revel H, Blumenthal RM, Westaway D, Reith AD, Rigby PW, Elhai J, Hanahan D.

Nucleic Acids Res. 1988 Feb 25;16(4):1563-75. Erratum in: Nucleic Acids Res 1995 Sep 11;23(17):3612.

39.

Physical analysis of Tn10- and IS10-promoted transpositions and rearrangements.

Shen MM, Raleigh EA, Kleckner N.

Genetics. 1987 Jul;116(3):359-69.

40.

Restriction and modification in vivo by Escherichia coli K12.

Raleigh EA.

Methods Enzymol. 1987;152:130-41. No abstract available.

PMID:
2821354
41.

Escherichia coli K-12 restricts DNA containing 5-methylcytosine.

Raleigh EA, Wilson G.

Proc Natl Acad Sci U S A. 1986 Dec;83(23):9070-4.

42.
43.

Multiple IS10 rearrangements in Escherichia coli.

Raleigh EA, Kleckner N.

J Mol Biol. 1984 Mar 15;173(4):437-61.

PMID:
6323719
44.

Positive selection of nodulation-deficient Rhizobium phaseoli.

Raleigh EA, Signer ER.

J Bacteriol. 1982 Jul;151(1):83-8.

45.

Further examination of presumptive Rhizobium trifolii mutants that nodulate Glycine max.

Ludwig RA, Raleigh EA, Duncan MJ, Signer ER, Gibson AH, Dudman WF, Schwinghamer EA, Jordan DC, Schmidt EL, Tran DT.

Proc Natl Acad Sci U S A. 1979 Aug;76(8):3942-6.

46.

Determination of DNA concentration by electron microscopy.

Raleigh EA, Davis RW.

Anal Biochem. 1976 May 7;72:460-7. No abstract available.

PMID:
821355

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