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Items: 1 to 50 of 79

1.

Cyclohexane, naphthalene, and diesel fuel increase oxidative stress, CYP153, sodA, and recA gene expression in Rhodococcus erythropolis.

Sazykin I, Makarenko M, Khmelevtsova L, Seliverstova E, Rakin A, Sazykina M.

Microbiologyopen. 2019 Sep;8(9):e00855. doi: 10.1002/mbo3.855. Epub 2019 May 22.

2.

Development of a flow cytometry based assay to determine the invasion of enteropathogenic Yersiniae into C2BBe1 cells.

Böhringer M, Rakin A, Neubauer H, Sprague LD.

J Microbiol Methods. 2018 Jun;149:29-35. doi: 10.1016/j.mimet.2018.04.017. Epub 2018 Apr 24.

PMID:
29698692
3.

The impact of length variations in the L2 loop on the structure and thermal stability of non-specific porins: The case of OmpCs from the Yersinia pseudotuberculosis complex.

Solov'eva T, Likhatskaya G, Khomenko V, Guzev K, Kim N, Bystritskaya E, Novikova O, Stenkova A, Rakin A, Isaeva M.

Biochim Biophys Acta Biomembr. 2018 Feb;1860(2):515-525. doi: 10.1016/j.bbamem.2017.10.014. Epub 2017 Oct 14.

4.

Molecular Evolution of the Yersinia Major Outer Membrane Protein C (OmpC).

Stenkova AM, Bystritskaya EP, Guzev KV, Rakin AV, Isaeva MP.

Evol Bioinform Online. 2016 Aug 21;12:185-91. doi: 10.4137/EBO.S40346. eCollection 2016.

5.

Adaptive responses of outer membrane porin balance of Yersinia ruckeri under different incubation temperature, osmolarity, and oxygen availability.

Bystritskaya E, Stenkova A, Chistuylin D, Chernysheva N, Khomenko V, Anastyuk S, Novikova O, Rakin A, Isaeva M.

Microbiologyopen. 2016 Aug;5(4):597-603. doi: 10.1002/mbo3.354. Epub 2016 Apr 1.

6.

[Regulation of Yersinia pseudotuberculosis major porin expression in response to antibiotic stress].

Bystritskaia EP, Stenkova AM, Portniagina OIu, Rakin AV, Rasskazov VA, Isaeva MP.

Mol Gen Mikrobiol Virusol. 2014;(2):17-21. Russian.

PMID:
25080814
7.

Effects of catecholamines on thymocyte apoptosis and proliferation depend on thymocyte microenvironment.

Radojević K, Rakin A, Pilipović I, Kosec D, Djikić J, Bufan B, Vujnović I, Leposavić G.

J Neuroimmunol. 2014 Jul 15;272(1-2):16-28. doi: 10.1016/j.jneuroim.2014.04.010. Epub 2014 Apr 26.

PMID:
24837703
8.

A molecular scheme for Yersinia enterocolitica patho-serotyping derived from genome-wide analysis.

Garzetti D, Susen R, Fruth A, Tietze E, Heesemann J, Rakin A.

Int J Med Microbiol. 2014 May;304(3-4):275-83. doi: 10.1016/j.ijmm.2013.10.007. Epub 2013 Oct 24.

PMID:
24246413
9.

Genome Sequences of Four Yersinia enterocolitica Bioserotype 4/O:3 Isolates from Mammals.

Garzetti D, Heesemann J, Rakin A.

Genome Announc. 2013 Jul 11;1(4). pii: e00466-13. doi: 10.1128/genomeA.00466-13.

10.

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.

Cui Y, Yu C, Yan Y, Li D, Li Y, Jombart T, Weinert LA, Wang Z, Guo Z, Xu L, Zhang Y, Zheng H, Qin N, Xiao X, Wu M, Wang X, Zhou D, Qi Z, Du Z, Wu H, Yang X, Cao H, Wang H, Wang J, Yao S, Rakin A, Li Y, Falush D, Balloux F, Achtman M, Song Y, Wang J, Yang R.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82. doi: 10.1073/pnas.1205750110. Epub 2012 Dec 27.

11.

Hunger for iron: the alternative siderophore iron scavenging systems in highly virulent Yersinia.

Rakin A, Schneider L, Podladchikova O.

Front Cell Infect Microbiol. 2012 Nov 30;2:151. doi: 10.3389/fcimb.2012.00151. eCollection 2012. Review.

12.

Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization.

Garzetti D, Bouabe H, Heesemann J, Rakin A.

BMC Genomics. 2012 Sep 11;13:467. doi: 10.1186/1471-2164-13-467.

13.

Yersinia pestis autoagglutination is mediated by HCP-like protein and siderophore Yersiniachelin (Ych).

Podladchikova O, Rykova V, Antonenka U, Rakin A.

Adv Exp Med Biol. 2012;954:289-92. doi: 10.1007/978-1-4614-3561-7_36. No abstract available.

PMID:
22782775
14.

The molecular phylogeny of the gyrB gene: a molecular marker for systematic characterization of the genus Yersinia.

Stenkova AM, Isaeva MP, Bystritskaya EP, Guzev KV, Rasskazov VA, Rakin A.

Adv Exp Med Biol. 2012;954:53-6. doi: 10.1007/978-1-4614-3561-7_7. No abstract available.

PMID:
22782746
15.

Diversity and adaptive evolution of a major porin gene (ompF) in Yersinia pseudotuberculosis.

Isaeva MP, Stenkova AM, Guzev KV, Bystritskaya EP, Shubin FN, Rasskazov VA, Rakin A.

Adv Exp Med Biol. 2012;954:39-43. doi: 10.1007/978-1-4614-3561-7_5. No abstract available.

PMID:
22782744
16.

Gains and Losses in Yersinia enterocolitica subsp. palearctica Genomes.

Rakin A, Batzilla J, Garzetti D, Heesemann J.

Adv Exp Med Biol. 2012;954:23-9. doi: 10.1007/978-1-4614-3561-7_3. No abstract available.

PMID:
22782742
17.

Identification of three oligo-/polysaccharide-specific ligases in Yersinia enterocolitica.

Pinta E, Li Z, Batzilla J, Pajunen M, Kasanen T, Rabsztyn K, Rakin A, Skurnik M.

Mol Microbiol. 2012 Jan;83(1):125-36. doi: 10.1111/j.1365-2958.2011.07918.x. Epub 2011 Nov 28.

18.

The pathogenic potential of Yersinia enterocolitica 1A.

Batzilla J, Heesemann J, Rakin A.

Int J Med Microbiol. 2011 Nov;301(7):556-61. doi: 10.1016/j.ijmm.2011.05.002. Epub 2011 Jul 28.

PMID:
21798805
19.

Yersinia pestis autoagglutination factor is a component of the type six secretion system.

Podladchikova O, Antonenka U, Heesemann J, Rakin A.

Int J Med Microbiol. 2011 Nov;301(7):562-9. doi: 10.1016/j.ijmm.2011.03.004. Epub 2011 Jul 23.

PMID:
21784704
20.

Unique cell adhesion and invasion properties of Yersinia enterocolitica O:3, the most frequent cause of human Yersiniosis.

Uliczka F, Pisano F, Schaake J, Stolz T, Rohde M, Fruth A, Strauch E, Skurnik M, Batzilla J, Rakin A, Heesemann J, Dersch P.

PLoS Pathog. 2011 Jul;7(7):e1002117. doi: 10.1371/journal.ppat.1002117. Epub 2011 Jul 7.

21.

Yersinia enterocolitica palearctica serobiotype O:3/4--a successful group of emerging zoonotic pathogens.

Batzilla J, Antonenka U, Höper D, Heesemann J, Rakin A.

BMC Genomics. 2011 Jul 6;12:348. doi: 10.1186/1471-2164-12-348.

22.

Trends of the major porin gene (ompF) evolution: insight from the genus Yersinia.

Stenkova AM, Isaeva MP, Shubin FN, Rasskazov VA, Rakin AV.

PLoS One. 2011;6(5):e20546. doi: 10.1371/journal.pone.0020546. Epub 2011 May 31.

23.

Complete genome sequence of Yersinia enterocolitica subsp. palearctica serogroup O:3.

Batzilla J, Höper D, Antonenka U, Heesemann J, Rakin A.

J Bacteriol. 2011 Apr;193(8):2067. doi: 10.1128/JB.01484-10. Epub 2011 Feb 4.

24.

Structures of the arm-type binding domains of HPI and HAI7 integrases.

Szwagierczak A, Antonenka U, Popowicz GM, Sitar T, Holak TA, Rakin A.

J Biol Chem. 2009 Nov 13;284(46):31664-71. doi: 10.1074/jbc.M109.059261. Epub 2009 Sep 8.

25.

The subcutaneous inoculation of pH 6 antigen mutants of Yersinia pestis does not affect virulence and immune response in mice.

Anisimov AP, Bakhteeva IV, Panfertsev EA, Svetoch TE, Kravchenko TB, Platonov ME, Titareva GM, Kombarova TI, Ivanov SA, Rakin AV, Amoako KK, Dentovskaya SV.

J Med Microbiol. 2009 Jan;58(Pt 1):26-36. doi: 10.1099/jmm.0.005678-0.

PMID:
19074650
26.

Inhibition of growth of Shiga toxin-producing Escherichia coli by nonpathogenic Escherichia coli.

Reissbrodt R, Hammes WP, dal Bello F, Prager R, Fruth A, Hantke K, Rakin A, Starcic-Erjavec M, Williams PH.

FEMS Microbiol Lett. 2009 Jan;290(1):62-9. doi: 10.1111/j.1574-6968.2008.01405.x. Epub 2008 Nov 10.

27.

Hypoxia-independent activation of HIF-1 by enterobacteriaceae and their siderophores.

Hartmann H, Eltzschig HK, Wurz H, Hantke K, Rakin A, Yazdi AS, Matteoli G, Bohn E, Autenrieth IB, Karhausen J, Neumann D, Colgan SP, Kempf VA.

Gastroenterology. 2008 Mar;134(3):756-67. doi: 10.1053/j.gastro.2007.12.008. Epub 2007 Dec 7.

PMID:
18325389
28.

Yersinia genome diversity disclosed by Yersinia pestis genome-wide DNA microarray.

Wang X, Han Y, Li Y, Guo Z, Song Y, Tan Y, Du Z, Rakin A, Zhou D, Yang R.

Can J Microbiol. 2007 Nov;53(11):1211-21.

PMID:
18026215
29.

Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.

Vergnaud G, Li Y, Gorgé O, Cui Y, Song Y, Zhou D, Grissa I, Dentovskaya SV, Platonov ME, Rakin A, Balakhonov SV, Neubauer H, Pourcel C, Anisimov AP, Yang R.

Adv Exp Med Biol. 2007;603:327-38.

PMID:
17966429
30.

Changes in thymus size, cellularity and relation between thymocyte subpopulations in young adult rats induced by somatostatin-14.

Petrović-Dergović DM, Rakin AK, Dimitrijević LA, Ristovski JS, Kustrimović NZ, Mićić MV.

Neuropeptides. 2007 Dec;41(6):485-93. Epub 2007 Aug 29.

PMID:
17761280
31.
32.

Somatostatin modulates T cells development in adult rat thymus.

Petrović-Djergović DM, Rakin AK, Kustrimović NZ, Ristovski JS, Dimitrijevic LA, Mileva MV.

Regul Pept. 2007 Aug 16;142(3):101-10. Epub 2007 Feb 22.

PMID:
17391781
33.

Independent acquisition of site-specific recombination factors by asn tRNA gene-targeting genomic islands.

Antonenka U, Nölting C, Heesemann J, Rakin A.

Int J Med Microbiol. 2006 Oct;296(6):341-52. Epub 2006 Jun 6.

PMID:
16753337
34.

A novel insertion sequence element, IS Yen2, as an epidemiological marker for weakly pathogenic bioserotypes of Yersinia enterocolitica.

Golubov A, Gierczynski R, Heesemann J, Rakin A.

Int J Med Microbiol. 2005 Aug;295(4):213-26.

PMID:
16128396
35.

Horizontal transfer of Yersinia high-pathogenicity island by the conjugative RP4 attB target-presenting shuttle plasmid.

Antonenka U, Nölting C, Heesemann J, Rakin A.

Mol Microbiol. 2005 Aug;57(3):727-34.

36.
37.

Transcriptional regulation of high pathogenicity island iron uptake genes by YbtA.

Anisimov R, Brem D, Heesemann J, Rakin A.

Int J Med Microbiol. 2005 Apr;295(1):19-28.

PMID:
15861813
38.

Exposure to forced swim stress alters morphofunctional characteristics of the rat thymus.

Zivković IP, Rakin AK, Petrović-Djergović DM, Kosec DJ, Mićić MV.

J Neuroimmunol. 2005 Mar;160(1-2):77-86. Epub 2005 Jan 4.

PMID:
15710460
39.

The effects of chronic stress on thymus innervation in the adult rat.

Zivković I, Rakin A, Petrović-Djergović D, Miljković B, Mićić M.

Acta Histochem. 2005;106(6):449-58. Epub 2005 Jan 12.

PMID:
15707654
40.

The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects.

Schubert S, Rakin A, Heesemann J.

Int J Med Microbiol. 2004 Sep;294(2-3):83-94. Review.

PMID:
15493818
41.

Intriguing diversity of Bacillus anthracis in eastern Poland--the molecular echoes of the past outbreaks.

Gierczyński R, Kałuzewski S, Rakin A, Jagielski M, Zasada A, Jakubczak A, Borkowska-Opacka B, Rastawicki W.

FEMS Microbiol Lett. 2004 Oct 15;239(2):235-40.

42.

Structural organization of the pFra virulence-associated plasmid of rhamnose-positive Yersinia pestis.

Golubov A, Neubauer H, Nölting C, Heesemann J, Rakin A.

Infect Immun. 2004 Oct;72(10):5613-21.

43.

Somatostatin-14 alters the thymus size and relation among the thymocyte subpopulations in peripubertal rats.

Petrovic-Dergovic DM, Zivković IP, Rakin AK, Kosec DJ, Dimitrijević LjA, Starcević VP, Severs WB, Mićić MV.

Neuropeptides. 2004 Feb;38(1):25-34.

PMID:
15003713
44.

Changes in the thymus of peripubertal rats induced by centrally applied somatostatin-28.

Petrovic-Djergovic DM, Rakin AK, Zivkovic IP, Micic MV.

Histochem J. 2002;34(11-12):573-82.

PMID:
14626348
45.

Rapid detection of Yersinia pestis with multiplex real-time PCR assays using fluorescent hybridisation probes.

Tomaso H, Reisinger EC, Al Dahouk S, Frangoulidis D, Rakin A, Landt O, Neubauer H.

FEMS Immunol Med Microbiol. 2003 Sep 22;38(2):117-26.

46.

Uncovering genomic differences in human pathogenic Yersinia enterocolitica.

Golubov A, Heesemann J, Rakin A.

FEMS Immunol Med Microbiol. 2003 Sep 22;38(2):107-11.

47.

Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis.

Hinchliffe SJ, Isherwood KE, Stabler RA, Prentice MB, Rakin A, Nichols RA, Oyston PC, Hinds J, Titball RW, Wren BW.

Genome Res. 2003 Sep;13(9):2018-29.

48.

Subtractive hybridization uncovers novel pathogenicity-associated loci in Yersinia enterocolitica.

Iwobi AN, Rakin A, Garcia E, Heesemann J.

Adv Exp Med Biol. 2003;529:25-9. No abstract available.

PMID:
12756722
49.

Tracing acquisitions and losses in Yersinia genomes.

Rakin A, Golubov A, Iwobi A, Heesemann J.

Adv Exp Med Biol. 2003;529:19-23. No abstract available.

PMID:
12756721
50.

Novel virulence-associated type II secretion system unique to high-pathogenicity Yersinia enterocolitica.

Iwobi A, Heesemann J, Garcia E, Igwe E, Noelting C, Rakin A.

Infect Immun. 2003 Apr;71(4):1872-9.

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