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Evaluation of ultra-low input RNA sequencing for the study of human T cell transcriptome.

Wang J, Rieder SA, Wu J, Hayes S, Halpin RA, de Los Reyes M, Shrestha Y, Kolbeck R, Raja R.

Sci Rep. 2019 Jun 11;9(1):8445. doi: 10.1038/s41598-019-44902-z.


Waste not, want not: CO2 (re)cycling into block polymers.

Raman SK, Raja R, Arnold PL, Davidson MG, Williams CK.

Chem Commun (Camb). 2019 Jun 7. doi: 10.1039/c9cc02459j. [Epub ahead of print]


Kirrel2 is differentially required in populations of olfactory sensory neurons for the targeting of axons in the olfactory bulb.

Vaddadi N, Iversen K, Raja R, Phen A, Brignall A, Dumontier E, Cloutier JF.

Development. 2019 Jun 12;146(11). pii: dev173310. doi: 10.1242/dev.173310.


Surgery, octreotide, temozolomide, bevacizumab, radiotherapy and pegvisomant treatment of an AIP mutation positive child.

Dutta P, Reddy KS, Rai A, Madugundu AK, Solanki HS, Bhansali A, Radotra BD, Kumar N, Collier D, Iacovazzo D, Gupta P, Raja R, Gowda H, Pandey A, Devgun JS, Korbonits M.

J Clin Endocrinol Metab. 2019 May 24. pii: jc.2019-00432. doi: 10.1210/jc.2019-00432. [Epub ahead of print]


Repeatability and Reproducibility of Neonatal Echocardiography: The Copenhagen Baby Heart Study.

Sillesen AS, Pihl C, Raja AA, Davidsen AS, Lind LE, Dannesbo S, Navne J, Raja R, Vejlstrup N, Lange T, Bundgaard H, Iversen K.

J Am Soc Echocardiogr. 2019 May 7. pii: S0894-7317(19)30101-4. doi: 10.1016/j.echo.2019.02.015. [Epub ahead of print]


Integrated theoretical and empirical studies for probing substrate-framework interactions in hierarchical catalysts.

Chapman S, O'Malley AJ, Miletto I, Carravetta M, Cox P, Gianotti E, Marchese L, Parker SF, Raja R.

Chemistry. 2019 Apr 29. doi: 10.1002/chem.201901188. [Epub ahead of print]


Acute ST-Segment Elevation Myocardial Infarction Following Intramuscular Diclofenac: A Case of Kounis Syndrome.

Rajh F, Raja R, Rajah F, AlAli A.

J Emerg Med. 2019 Apr 20. pii: S0736-4679(19)30233-1. doi: 10.1016/j.jemermed.2019.03.026. [Epub ahead of print]


Development of a cytology-based multivariate analytical risk index for oral cancer.

Abram TJ, Floriano PN, James R, Kerr AR, Thornhill MH, Redding SW, Vigneswaran N, Raja R, McRae MP, McDevitt JT.

Oral Oncol. 2019 May;92:6-11. doi: 10.1016/j.oraloncology.2019.02.011. Epub 2019 Mar 13.


Staphylococcus aureus drives expansion of low-density neutrophils in diabetic mice.

Cohen TS, Takahashi V, Bonnell J, Tovchigrechko A, Chaerkady R, Yu W, Jones-Nelson O, Lee Y, Raja R, Hess S, Stover CK, Worthington JJ, Travis MA, Sellman BR.

J Clin Invest. 2019 Apr 15;130:2133-2144. doi: 10.1172/JCI126938. eCollection 2019 Apr 15.


Mutational pathway maps and founder effects define the within-host spectrum of hepatitis C virus mutants resistant to drugs.

Raja R, Pareek A, Newar K, Dixit NM.

PLoS Pathog. 2019 Apr 1;15(4):e1007701. doi: 10.1371/journal.ppat.1007701. eCollection 2019 Apr.


Towards multiscale modeling of the CD8+ T cell response to viral infections.

Baral S, Raja R, Sen P, Dixit NM.

Wiley Interdiscip Rev Syst Biol Med. 2019 Jul;11(4):e1446. doi: 10.1002/wsbm.1446. Epub 2019 Feb 27. Review.


A preliminary biopsychosocial analysis of online information on causes of neck pain.

Neelapala YVR, Raja R, Bhandary A.

Musculoskeletal Care. 2019 Feb 14. doi: 10.1002/msc.1388. [Epub ahead of print]


Inter-relationship between intercepted radiation and rice yield influenced by transplanting time, method, and variety.

Gautam P, Lal B, Nayak AK, Raja R, Panda BB, Tripathi R, Shahid M, Kumar U, Baig MJ, Chatterjee D, Swain CK.

Int J Biometeorol. 2019 Mar;63(3):337-349. doi: 10.1007/s00484-018-01667-w. Epub 2019 Jan 24.


PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40).

Subbannayya T, Leal-Rojas P, Zhavoronkov A, Ozerov IV, Korzinkin M, Babu N, Radhakrishnan A, Chavan S, Raja R, Pinto SM, Patil AH, Barbhuiya MA, Kumar P, Guerrero-Preston R, Navani S, Tiwari PK, Kumar RV, Prasad TSK, Roa JC, Pandey A, Sidransky D, Gowda H, Izumchenko E, Chatterjee A.

J Cell Commun Signal. 2019 Jun;13(2):163-177. doi: 10.1007/s12079-018-00503-5. Epub 2019 Jan 21.


Degenerate four-wave mixing for measurement of magnetic field using a nanoparticles-doped highly nonlinear photonic crystal fiber.

Nallusamy N, Zu P, Raja RVJ, Arzate N, Vigneswaran D.

Appl Opt. 2019 Jan 10;58(2):333-339. doi: 10.1364/AO.58.000333.


Review of diffusion MRI studies in chronic white matter diseases.

Raja R, Rosenberg G, Caprihan A.

Neurosci Lett. 2019 Feb 16;694:198-207. doi: 10.1016/j.neulet.2018.12.007. Epub 2018 Dec 6. Review.


Characteristics of pea, lentil and faba bean starches isolated from air-classified flours in comparison with commercial starches.

Li L, Yuan TZ, Setia R, Raja RB, Zhang B, Ai Y.

Food Chem. 2019 Mar 15;276:599-607. doi: 10.1016/j.foodchem.2018.10.064. Epub 2018 Oct 12.


Improved Therapeutic Window in BRCA-mutant Tumors with Antibody-linked Pyrrolobenzodiazepine Dimers with and without PARP Inhibition.

Zhong H, Chen C, Tammali R, Breen S, Zhang J, Fazenbaker C, Kennedy M, Conway J, Higgs BW, Holoweckyj N, Raja R, Harper J, Pierce AJ, Herbst R, Tice DA.

Mol Cancer Ther. 2019 Jan;18(1):89-99. doi: 10.1158/1535-7163.MCT-18-0314. Epub 2018 Oct 23.


Serum deprivation/starvation leads to reactivation of HIV-1 in latently infected monocytes via activating ERK/JNK pathway.

Raja R, Lata S, Trivedi S, Banerjea AC.

Sci Rep. 2018 Sep 27;8(1):14496. doi: 10.1038/s41598-018-32316-2.


Comprehensive Vibrational Spectroscopic Characterization of Nylon-6 Precursors for Precise Tracking of the Beckmann Rearrangement.

Chapman S, O'Malley AJ, Parker SF, Raja R.

Chemphyschem. 2018 Sep 25. doi: 10.1002/cphc.201800721. [Epub ahead of print]


Early Reduction in ctDNA Predicts Survival in Patients with Lung and Bladder Cancer Treated with Durvalumab.

Raja R, Kuziora M, Brohawn PZ, Higgs BW, Gupta A, Dennis PA, Ranade K.

Clin Cancer Res. 2018 Dec 15;24(24):6212-6222. doi: 10.1158/1078-0432.CCR-18-0386. Epub 2018 Aug 9.


Comparison of integrated sustainable biodiesel and antibacterial nano silver production by microalgal and yeast isolates.

Ananthi V, Siva Prakash G, Mohan Rasu K, Gangadevi K, Boobalan T, Raja R, Anand K, Sudhakar M, Chuturgoon A, Arun A.

J Photochem Photobiol B. 2018 Sep;186:232-242. doi: 10.1016/j.jphotobiol.2018.07.021. Epub 2018 Jul 24.


Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection.

Venugopal V, Padmanabhan P, Raja R, Dixit NM.

PLoS Comput Biol. 2018 Jul 12;14(7):e1006335. doi: 10.1371/journal.pcbi.1006335. eCollection 2018 Jul.


Integrated Multi-Omic Analysis of Mycobacterium tuberculosis H37Ra Redefines Virulence Attributes.

Pinto SM, Verma R, Advani J, Chatterjee O, Patil AH, Kapoor S, Subbannayya Y, Raja R, Gandotra S, Prasad TSK.

Front Microbiol. 2018 Jun 19;9:1314. doi: 10.3389/fmicb.2018.01314. eCollection 2018.


Interrogation of transcriptomic changes associated with drug-induced hepatic sinusoidal dilatation in colorectal cancer.

Jarzabek MA, Proctor WR, Vogt J, Desai R, Dicker P, Cain G, Raja R, Brodbeck J, Stevens D, van der Stok EP, Martens JWM, Verhoef C, Hegde PS, Byrne AT, Tarrant JM.

PLoS One. 2018 Jun 7;13(6):e0198099. doi: 10.1371/journal.pone.0198099. eCollection 2018.


Mapping an ancient city with a century of remotely sensed data.

Stott D, Kristiansen SM, Lichtenberger A, Raja R.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5450-E5458. doi: 10.1073/pnas.1721509115. Epub 2018 May 29.


Global exponential stability of Markovian jumping stochastic impulsive uncertain BAM neural networks with leakage, mixed time delays, and α-inverse Hölder activation functions.

Maharajan C, Raja R, Cao J, Ravi G, Rajchakit G.

Adv Differ Equ. 2018;2018(1):113. doi: 10.1186/s13662-018-1553-7. Epub 2018 Mar 27.


Hierarchical SAPO-34 Architectures with Tailored Acid Sites using Sustainable Sugar Templates.

Miletto I, Ivaldi C, Paul G, Chapman S, Marchese L, Raja R, Gianotti E.

ChemistryOpen. 2018 Apr 14;7(4):297-301. doi: 10.1002/open.201800001. eCollection 2018 Apr.


Robust generalized Mittag-Leffler synchronization of fractional order neural networks with discontinuous activation and impulses.

Pratap A, Raja R, Sowmiya C, Bagdasar O, Cao J, Rajchakit G.

Neural Netw. 2018 Jul;103:128-141. doi: 10.1016/j.neunet.2018.03.012. Epub 2018 Apr 4.


Approximation of state variables for discrete-time stochastic genetic regulatory networks with leakage, distributed, and probabilistic measurement delays: a robust stability problem.

Pandiselvi S, Raja R, Cao J, Rajchakit G, Ahmad B.

Adv Differ Equ. 2018;2018(1):123. doi: 10.1186/s13662-018-1569-z. Epub 2018 Apr 3.


Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor.

Solanki HS, Raja R, Zhavoronkov A, Ozerov IV, Artemov AV, Advani J, Radhakrishnan A, Babu N, Puttamallesh VN, Syed N, Nanjappa V, Subbannayya T, Sahasrabuddhe NA, Patil AH, Prasad TSK, Gaykalova D, Chang X, Sathyendran R, Mathur PP, Rangarajan A, Sidransky D, Pandey A, Izumchenko E, Gowda H, Chatterjee A.

Oncoscience. 2018 Feb 23;5(1-2):21-38. doi: 10.18632/oncoscience.395. eCollection 2018 Jan.


S. aureus Evades Macrophage Killing through NLRP3-Dependent Effects on Mitochondrial Trafficking.

Cohen TS, Boland ML, Boland BB, Takahashi V, Tovchigrechko A, Lee Y, Wilde AD, Mazaitis MJ, Jones-Nelson O, Tkaczyk C, Raja R, Stover CK, Sellman BR.

Cell Rep. 2018 Feb 27;22(9):2431-2441. doi: 10.1016/j.celrep.2018.02.027.


Risk Stratification of Oral Potentially Malignant Disorders in Fanconi Anemia Patients Using Autofluorescence Imaging and Cytology-On-A Chip Assay.

Abram TJ, Pickering CR, Lang AK, Bass NE, Raja R, Meena C, Alousi AM, Myers JN, McDevitt JT, Gillenwater AM, Vigneswaran N.

Transl Oncol. 2018 Apr;11(2):477-486. doi: 10.1016/j.tranon.2018.01.014. Epub 2018 Feb 24.


The Molecular Design of Active Sites in Nanoporous Materials for Sustainable Catalysis.

Chapman S, Potter ME, Raja R.

Molecules. 2017 Dec 2;22(12). pii: E2127. doi: 10.3390/molecules22122127.


A systematic review assessing non-pharmacological conservative treatment studies for people with non-inflammatory multi-joint pain: clinical outcomes and research design considerations.

Comer C, Smith TO, Drew B, Raja R, Kingsbury SR, Conaghan PG.

Rheumatol Int. 2018 Mar;38(3):331-341. doi: 10.1007/s00296-017-3876-1. Epub 2017 Nov 16. Review.


Correction: HIV-1 Tat potently stabilises Mdm2 and enhances viral replication.

Raja R, Ronsard L, Lata S, Trivedi S, Banerjea AC.

Biochem J. 2017 Nov 9;474(22):3869. doi: 10.1042/BCJ-2016-0825_COR. No abstract available.


MRI measurements of Blood-Brain Barrier function in dementia: A review of recent studies.

Raja R, Rosenberg GA, Caprihan A.

Neuropharmacology. 2018 May 15;134(Pt B):259-271. doi: 10.1016/j.neuropharm.2017.10.034. Epub 2017 Oct 28. Review.


Enhanced robust finite-time passivity for Markovian jumping discrete-time BAM neural networks with leakage delay.

Sowmiya C, Raja R, Cao J, Rajchakit G, Alsaedi A.

Adv Differ Equ. 2017;2017(1):318. doi: 10.1186/s13662-017-1378-9. Epub 2017 Oct 10.


Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells.

Solanki HS, Babu N, Jain AP, Bhat MY, Puttamallesh VN, Advani J, Raja R, Mangalaparthi KK, Kumar MM, Prasad TSK, Mathur PP, Sidransky D, Gowda H, Chatterjee A.

Mitochondrion. 2018 May;40:58-70. doi: 10.1016/j.mito.2017.10.002. Epub 2017 Oct 16.


Rates of Joint Replacement Surgery in New Zealand, 1999-2015: A Comparison of Rheumatoid Arthritis and Osteoarthritis.

Stamp LK, Haslett J, Chapman P, O'Donnell J, Raja R, Rothwell A, Frampton C, Hooper G.

J Rheumatol. 2017 Dec;44(12):1823-1827. doi: 10.3899/jrheum.170551. Epub 2017 Oct 15.


Loss of Kirrel family members alters glomerular structure and synapse numbers in the accessory olfactory bulb.

Brignall AC, Raja R, Phen A, Prince JEA, Dumontier E, Cloutier JF.

Brain Struct Funct. 2018 Jan;223(1):307-319. doi: 10.1007/s00429-017-1485-0. Epub 2017 Aug 16.


Rituximab is effective as first line therapy in the management of steroid sensitive, but dependent/relapsing adult Nephrotic syndrome.

Rao IR, Pinnamaneni ST, Ranjana M, Ritambhra N, Vivek K, Manish R, Kohli HS, Jha VV, Gupta K, Raja R.

Nephrology (Carlton). 2017 Sep;22(9):731-732. doi: 10.1111/nep.12924. No abstract available. Erratum in: Nephrology (Carlton). 2017 Oct;22(10 ):825.


Management of Gout in a Hospital Setting: A Lost Opportunity.

Wright S, Chapman PT, Frampton C, O'Donnell JL, Raja R, Stamp LK.

J Rheumatol. 2017 Oct;44(10):1493-1498. doi: 10.3899/jrheum.170387. Epub 2017 Aug 1.


Ultrasonographic Estimation of Endotracheal Tube Size in Paediatric Patients and its Comparison with Physical Indices Based Formulae: A Prospective Study.

Sutagatti JG, Raja R, Kurdi MS.

J Clin Diagn Res. 2017 May;11(5):UC05-UC08. doi: 10.7860/JCDR/2017/25905.9838. Epub 2017 May 1.


Corrigendum: A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma.

Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TSK, Santosh V, Sukumar G, Califano JA, Rangarajan A, Sidransky D, Pandey A, Gowda H, Chatterjee A.

Sci Rep. 2017 Jun 26;7:46864. doi: 10.1038/srep46864.


Mesoporous Silica Scaffolds as Precursor to Drive the Formation of Hierarchical SAPO-34 with Tunable Acid Properties.

Miletto I, Paul G, Chapman S, Gatti G, Marchese L, Raja R, Gianotti E.

Chemistry. 2017 Jul 21;23(41):9952-9961. doi: 10.1002/chem.201701978. Epub 2017 Jun 28.


Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability.

Muthusamy B, Selvan LDN, Nguyen TT, Manoj J, Stawiski EW, Jaiswal BS, Wang W, Raja R, Ramprasad VL, Gupta R, Murugan S, Kadandale JS, Prasad TSK, Reddy K, Peterson A, Pandey A, Seshagiri S, Girimaji SC, Gowda H.

OMICS. 2017 May;21(5):295-303. doi: 10.1089/omi.2017.0009.


HIV-1 Tat potently stabilises Mdm2 and enhances viral replication.

Raja R, Ronsard L, Lata S, Trivedi S, Banerjea AC.

Biochem J. 2017 Jul 11;474(14):2449-2464. doi: 10.1042/BCJ20160825. Erratum in: Biochem J. 2017 Nov 9;474(22):3869.

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