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Items: 1 to 50 of 241

1.

Causes and biophysical consequences of cellulose production by Pseudomonas fluorescens SBW25 at the air-liquid interface.

Ardré M, Dufour D, Rainey PB.

J Bacteriol. 2019 May 13. pii: JB.00110-19. doi: 10.1128/JB.00110-19. [Epub ahead of print]

2.

The Case of Missing Immunofixation Bands.

Bosch DE, Rainey PM, Wener MH.

Clin Chem. 2019 Apr;65(4):601-602. doi: 10.1373/clinchem.2018.296921. No abstract available.

PMID:
30923066
3.

Ribosome Provisioning Activates a Bistable Switch Coupled to Fast Exit from Stationary Phase.

Remigi P, Ferguson GC, McConnell E, De Monte S, Rogers DW, Rainey PB.

Mol Biol Evol. 2019 May 1;36(5):1056-1070. doi: 10.1093/molbev/msz041.

4.

Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25.

Gallie J, Bertels F, Remigi P, Ferguson GC, Nestmann S, Rainey PB.

Mol Biol Evol. 2019 May 1;36(5):1071-1085. doi: 10.1093/molbev/msz040.

5.

Predicting mutational routes to new adaptive phenotypes.

Lind PA, Libby E, Herzog J, Rainey PB.

Elife. 2019 Jan 8;8. pii: e38822. doi: 10.7554/eLife.38822.

6.

'Skill-of-the-week' teaches informal skills.

Wiedemer JP, Berkey F, Adams J, Rainey P.

Med Educ. 2018 Nov;52(11):1206-1207. doi: 10.1111/medu.13721. No abstract available.

PMID:
30345668
7.

Genetic structure of the grey side-gilled sea slug (Pleurobranchaea maculata) in coastal waters of New Zealand.

Yıldırım Y, Anderson MJ, Hansson B, Patel S, Millar CD, Rainey PB.

PLoS One. 2018 Aug 16;13(8):e0202197. doi: 10.1371/journal.pone.0202197. eCollection 2018.

8.

The ecological genetics of Pseudomonas syringae from kiwifruit leaves.

Straub C, Colombi E, Li L, Huang H, Templeton MD, McCann HC, Rainey PB.

Environ Microbiol. 2018 Jun;20(6):2066-2084. doi: 10.1111/1462-2920.14092. Epub 2018 Mar 26.

PMID:
29521473
9.

Adaptive evolution by spontaneous domain fusion and protein relocalization.

Farr AD, Remigi P, Rainey PB.

Nat Ecol Evol. 2017 Oct;1(10):1562-1568. doi: 10.1038/s41559-017-0283-7. Epub 2017 Aug 28.

PMID:
29185504
10.

Fragmentation modes and the evolution of life cycles.

Pichugin Y, Peña J, Rainey PB, Traulsen A.

PLoS Comput Biol. 2017 Nov 22;13(11):e1005860. doi: 10.1371/journal.pcbi.1005860. eCollection 2017 Nov.

11.

Darwin was right: where now for experimental evolution?

Rainey PB, Remigi P, Farr AD, Lind PA.

Curr Opin Genet Dev. 2017 Dec;47:102-109. doi: 10.1016/j.gde.2017.09.003. Epub 2017 Oct 20. Review.

PMID:
29059583
12.

Identification and Characterization of Domesticated Bacterial Transposases.

Bertels F, Gallie J, Rainey PB.

Genome Biol Evol. 2017 Aug 1;9(8):2110-2121. doi: 10.1093/gbe/evx146.

13.

Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25.

Liu Y, Gokhale CS, Rainey PB, Zhang XX.

Mol Microbiol. 2017 Aug;105(4):589-605. doi: 10.1111/mmi.13720. Epub 2017 Jun 19.

14.

Navigating Without a Roadmap: Challenges of Early Alzheimer's Caregivers With Their Health Care Team.

Zubatsky M, Aragon-Prada M, Muse F, Rainey P, Martin R.

Glob Qual Nurs Res. 2016 Oct 17;3:2333393616673465. doi: 10.1177/2333393616673465. eCollection 2016 Jan-Dec.

15.

Crystal structure of a bicupin protein HutD involved in histidine utilization in Pseudomonas.

Gerth ML, Liu Y, Jiao W, Zhang XX, Baker EN, Lott JS, Rainey PB, Johnston JM.

Proteins. 2017 Aug;85(8):1580-1588. doi: 10.1002/prot.25303. Epub 2017 Apr 25.

PMID:
28383128
16.

Origin and Evolution of the Kiwifruit Canker Pandemic.

McCann HC, Li L, Liu Y, Li D, Pan H, Zhong C, Rikkerink EHA, Templeton MD, Straub C, Colombi E, Rainey PB, Huang H.

Genome Biol Evol. 2017 Apr 1;9(4):932-944. doi: 10.1093/gbe/evx055.

17.

Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra.

Shewaramani S, Finn TJ, Leahy SC, Kassen R, Rainey PB, Moon CD.

PLoS Genet. 2017 Jan 19;13(1):e1006570. doi: 10.1371/journal.pgen.1006570. eCollection 2017 Jan.

18.

Evolution of copper resistance in the kiwifruit pathogen Pseudomonas syringae pv. actinidiae through acquisition of integrative conjugative elements and plasmids.

Colombi E, Straub C, Künzel S, Templeton MD, McCann HC, Rainey PB.

Environ Microbiol. 2017 Feb;19(2):819-832. doi: 10.1111/1462-2920.13662. Epub 2017 Feb 1.

PMID:
28063194
19.

Evolutionary convergence in experimental Pseudomonas populations.

Lind PA, Farr AD, Rainey PB.

ISME J. 2017 Mar;11(3):589-600. doi: 10.1038/ismej.2016.157. Epub 2016 Dec 2.

20.

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.

21.

Correction to 'Competition both drives and impedes diversification in a model adaptive radiation'.

Bailey SF, Dettman JR, Rainey PB, Kassen R.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160763. doi: 10.1098/rspb.2016.0763. No abstract available.

22.

Lineage Tracking for Probing Heritable Phenotypes at Single-Cell Resolution.

Cottinet D, Condamine F, Bremond N, Griffiths AD, Rainey PB, de Visser JA, Baudry J, Bibette J.

PLoS One. 2016 Apr 14;11(4):e0152395. doi: 10.1371/journal.pone.0152395. eCollection 2016.

23.

The turnover of strains in intermittent and persistent nasal carriers of Staphylococcus aureus.

Ritchie SR, Isdale E, Priest P, Rainey PB, Thomas MG.

J Infect. 2016 Mar;72(3):295-301. doi: 10.1016/j.jinf.2015.12.010. Epub 2015 Dec 24.

PMID:
26724770
24.

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium.

Freschi L, Jeukens J, Kukavica-Ibrulj I, Boyle B, Dupont MJ, Laroche J, Larose S, Maaroufi H, Fothergill JL, Moore M, Winsor GL, Aaron SD, Barbeau J, Bell SC, Burns JL, Camara M, Cantin A, Charette SJ, Dewar K, Déziel É, Grimwood K, Hancock RE, Harrison JJ, Heeb S, Jelsbak L, Jia B, Kenna DT, Kidd TJ, Klockgether J, Lam JS, Lamont IL, Lewenza S, Loman N, Malouin F, Manos J, McArthur AG, McKeown J, Milot J, Naghra H, Nguyen D, Pereira SK, Perron GG, Pirnay JP, Rainey PB, Rousseau S, Santos PM, Stephenson A, Taylor V, Turton JF, Waglechner N, Williams P, Thrane SW, Wright GD, Brinkman FS, Tucker NP, Tümmler B, Winstanley C, Levesque RC.

Front Microbiol. 2015 Sep 29;6:1036. doi: 10.3389/fmicb.2015.01036. eCollection 2015.

25.

Modes of migration and multilevel selection in evolutionary multiplayer games.

Pichugin Y, Gokhale CS, Garcia J, Traulsen A, Rainey PB.

J Theor Biol. 2015 Dec 21;387:144-53. doi: 10.1016/j.jtbi.2015.09.027. Epub 2015 Oct 9.

PMID:
26456203
26.

Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol.

Liu Y, Rainey PB, Zhang XX.

Mol Microbiol. 2015 Oct;98(3):553-70. doi: 10.1111/mmi.13142. Epub 2015 Aug 16.

27.

Role of the Transporter-Like Sensor Kinase CbrA in Histidine Uptake and Signal Transduction.

Zhang XX, Gauntlett JC, Oldenburg DG, Cook GM, Rainey PB.

J Bacteriol. 2015 Sep;197(17):2867-78. doi: 10.1128/JB.00361-15. Epub 2015 Jul 6.

28.

Experimental evolution reveals hidden diversity in evolutionary pathways.

Lind PA, Farr AD, Rainey PB.

Elife. 2015 Mar 25;4. doi: 10.7554/eLife.07074.

29.

Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens.

Gallie J, Libby E, Bertels F, Remigi P, Jendresen CB, Ferguson GC, Desprat N, Buffing MF, Sauer U, Beaumont HJ, Martinussen J, Kilstrup M, Rainey PB.

PLoS Biol. 2015 Mar 12;13(3):e1002109. doi: 10.1371/journal.pbio.1002109. eCollection 2015 Mar.

30.

Precarious development: the uncertain social life of cellular slime molds.

Rainey PB.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2639-40. doi: 10.1073/pnas.1500708112. Epub 2015 Feb 23. No abstract available.

31.

Mini-Tn7 vectors for studying post-transcriptional gene expression in Pseudomonas.

Liu Y, Rainey PB, Zhang XX.

J Microbiol Methods. 2014 Dec;107:182-5.

PMID:
25447885
32.

Life cycles, fitness decoupling and the evolution of multicellularity.

Hammerschmidt K, Rose CJ, Kerr B, Rainey PB.

Nature. 2014 Nov 6;515(7525):75-9. doi: 10.1038/nature13884.

PMID:
25373677
33.

Point-of-care testing: is faster better?

Rainey PM, Ulibarri M.

Am J Clin Pathol. 2014 Nov;142(5):582-3. doi: 10.1309/AJCPK66XDGPKCHTH. No abstract available.

PMID:
25319970
34.

Microbes are not bound by sociobiology: response to Kümmerli and Ross-Gillespie (2013).

Rainey PB, Desprat N, Driscoll WW, Zhang XX.

Evolution. 2014 Nov;68(11):3344-55. doi: 10.1111/evo.12508. Epub 2014 Sep 29.

PMID:
25141778
35.

The genetic structure of Staphylococcus aureus populations from the Southwest Pacific.

Ritchie SR, Thomas MG, Rainey PB.

PLoS One. 2014 Jul 8;9(7):e100300. doi: 10.1371/journal.pone.0100300. eCollection 2014.

36.

Nascent multicellular life and the emergence of individuality.

De Monte S, Rainey PB.

J Biosci. 2014 Apr;39(2):237-48.

PMID:
24736157
37.

The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography.

Whiteson KL, Bailey B, Bergkessel M, Conrad D, Delhaes L, Felts B, Harris JK, Hunter R, Lim YW, Maughan H, Quinn R, Salamon P, Sullivan J, Wagner BD, Rainey PB.

Am J Respir Crit Care Med. 2014 Jun 1;189(11):1309-15. doi: 10.1164/rccm.201312-2129PP.

38.

The biosurfactant viscosin produced by Pseudomonas fluorescens SBW25 aids spreading motility and plant growth promotion.

Alsohim AS, Taylor TB, Barrett GA, Gallie J, Zhang XX, Altamirano-Junqueira AE, Johnson LJ, Rainey PB, Jackson RW.

Environ Microbiol. 2014 Jul;16(7):2267-81. doi: 10.1111/1462-2920.12469. Epub 2014 Apr 29.

PMID:
24684210
39.

Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E.

Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5.

40.

Eco-evolutionary feedback and the tuning of proto-developmental life cycles.

Libby E, Rainey PB.

PLoS One. 2013 Dec 18;8(12):e82274. doi: 10.1371/journal.pone.0082274. eCollection 2013.

41.

Effects of HCV seropositive status on buprenorphine pharmacokinetics in opioid-dependent individuals.

Masson CL, Rainey PM, Moody DE, McCance-Katz EF.

Am J Addict. 2014 Jan-Feb;23(1):34-40. doi: 10.1111/j.1521-0391.2013.12052.x. Epub 2013 Jun 10.

42.

Founder niche constrains evolutionary adaptive radiation.

Flohr RC, Blom CJ, Rainey PB, Beaumont HJ.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20663-8. doi: 10.1073/pnas.1310310110. Epub 2013 Dec 4.

43.

Urocanate as a potential signaling molecule for bacterial recognition of eukaryotic hosts.

Zhang XX, Ritchie SR, Rainey PB.

Cell Mol Life Sci. 2014 Feb;71(4):541-7. doi: 10.1007/s00018-013-1527-6. Epub 2013 Dec 5.

PMID:
24305948
44.

Exploring the sociobiology of pyoverdin-producing Pseudomonas.

Zhang XX, Rainey PB.

Evolution. 2013 Nov;67(11):3161-74. doi: 10.1111/evo.12183. Epub 2013 Jul 10.

PMID:
24152000
45.
46.

Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease.

McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Rainey PB, Templeton MD.

PLoS Pathog. 2013;9(7):e1003503. doi: 10.1371/journal.ppat.1003503. Epub 2013 Jul 25. Erratum in: PLoS Pathog. 2013;9(9). doi:10.1371/annotation/af157ddc-200a-4105-b243-3f01251cc677. Vanneste, Joel [corrected to Vanneste, Joel L].

47.

Interactions between alcohol and the HIV entry inhibitor Maraviroc.

Gruber VA, Rainey PM, Lum PJ, Beatty GW, Aweeka FT, McCance-Katz EF.

J Int Assoc Provid AIDS Care. 2013 Nov-Dec;12(6):375-7. doi: 10.1177/2325957413495567. Epub 2013 Jul 23.

48.

Competition both drives and impedes diversification in a model adaptive radiation.

Bailey SF, Dettman JR, Rainey PB, Kassen R.

Proc Biol Sci. 2013 Sep 7;280(1766):20131253. doi: 10.1098/rspb.2013.1253. Print 2013 Sep 7. Erratum in: Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160763. doi: 10.1098/rspb.2016.0763.

49.

The effect of population structure on the rate of evolution.

Frean M, Rainey PB, Traulsen A.

Proc Biol Sci. 2013 May 15;280(1762):20130211. doi: 10.1098/rspb.2013.0211. Print 2013 Jul 7.

50.

A microfluidic anti-Factor Xa assay device for point of care monitoring of anticoagulation therapy.

Harris LF, Rainey P, Castro-López V, O'Donnell JS, Killard AJ.

Analyst. 2013 Sep 7;138(17):4769-76. doi: 10.1039/c3an00401e. Epub 2013 May 13.

PMID:
23666610

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