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Items: 1 to 50 of 168

1.

Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'.

Whitman WB, Oren A, Chuvochina M, da Costa MS, Garrity GM, Rainey FA, Rossello-Mora R, Schink B, Sutcliffe I, Trujillo ME, Ventura S.

Int J Syst Evol Microbiol. 2018 Mar;68(3):967-969. doi: 10.1099/ijsem.0.002593. Epub 2018 Jan 18.

PMID:
29458499
2.

Dehalogenimonas formicexedens sp. nov., a chlorinated alkane-respiring bacterium isolated from contaminated groundwater.

Key TA, Bowman KS, Lee I, Chun J, Albuquerque L, da Costa MS, Rainey FA, Moe WM.

Int J Syst Evol Microbiol. 2017 May;67(5):1366-1373. doi: 10.1099/ijsem.0.001819. Epub 2017 Jun 5.

PMID:
28126048
3.

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3(T)).

Key TA, Richmond DP, Bowman KS, Cho YJ, Chun J, da Costa MS, Rainey FA, Moe WM.

Stand Genomic Sci. 2016 Jun 23;11:44. doi: 10.1186/s40793-016-0165-7. eCollection 2016.

4.

Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes.

Oren A, da Costa MS, Garrity GM, Rainey FA, Rosselló-Móra R, Schink B, Sutcliffe I, Trujillo ME, Whitman WB.

Int J Syst Evol Microbiol. 2015 Nov;65(11):4284-4287. doi: 10.1099/ijsem.0.000664.

PMID:
26654112
5.

Proposal to restrict the genus Clostridium Prazmowski to Clostridium butyricum and related species.

Lawson PA, Rainey FA.

Int J Syst Evol Microbiol. 2016 Feb;66(2):1009-1016. doi: 10.1099/ijsem.0.000824. Epub 2015 Dec 7.

PMID:
26643615
6.

Reassessment of PCR primers targeting 16S rRNA genes of the organohalide-respiring genus Dehalogenimonas.

Chen J, Bowman KS, Rainey FA, Moe WM.

Biodegradation. 2014 Sep;25(5):747-56. doi: 10.1007/s10532-014-9696-z. Epub 2014 Jul 3.

PMID:
24989478
7.

Description of two new thermophilic species of the genus Rubrobacter, Rubrobacter calidifluminis sp. nov. and Rubrobacter naiadicus sp. nov., and emended description of the genus Rubrobacter and the species Rubrobacter bracarensis.

Albuquerque L, Johnson MM, Schumann P, Rainey FA, da Costa MS.

Syst Appl Microbiol. 2014 Jun;37(4):235-43. doi: 10.1016/j.syapm.2014.03.001. Epub 2014 Apr 26.

PMID:
24780859
8.

Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as electron acceptors.

Mukherjee K, Bowman KS, Rainey FA, Siddaramappa S, Challacombe JF, Moe WM.

FEMS Microbiol Lett. 2014 May;354(2):111-8. doi: 10.1111/1574-6968.12434. Epub 2014 Apr 10.

9.

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea.

Chun J, Rainey FA.

Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):316-24. doi: 10.1099/ijs.0.054171-0. Review.

PMID:
24505069
10.

Substrate interactions in dehalogenation of 1,2-dichloroethane, 1,2-dichloropropane, and 1,1,2-trichloroethane mixtures by Dehalogenimonas spp.

Dillehay JL, Bowman KS, Yan J, Rainey FA, Moe WM.

Biodegradation. 2014 Apr;25(2):301-12. doi: 10.1007/s10532-013-9661-2. Epub 2013 Aug 30.

PMID:
23990262
11.

Heliimonas saccharivorans gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a mineral water aquifer, and emended description of Filimonas lacunae.

Leandro T, França L, Nobre MF, Rainey FA, da Costa MS.

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3793-9. doi: 10.1099/ijs.0.050021-0. Epub 2013 May 10.

PMID:
23667140
12.

Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane.

Maness AD, Bowman KS, Yan J, Rainey FA, Moe WM.

AMB Express. 2012 Oct 9;2(1):54. doi: 10.1186/2191-0855-2-54.

13.

Oceanicella actignis gen. nov., sp. nov., a halophilic slightly thermophilic member of the Alphaproteobacteria.

Albuquerque L, Rainey FA, Nobre MF, da Costa MS.

Syst Appl Microbiol. 2012 Sep;35(6):385-9. doi: 10.1016/j.syapm.2012.07.001. Epub 2012 Aug 13.

PMID:
22898658
14.

Dehalogenimonas alkenigignens sp. nov., a chlorinated-alkane-dehalogenating bacterium isolated from groundwater.

Bowman KS, Nobre MF, da Costa MS, Rainey FA, Moe WM.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1492-8. doi: 10.1099/ijs.0.045054-0. Epub 2012 Aug 10.

PMID:
22888191
15.

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains.

Siddaramappa S, Challacombe JF, Delano SF, Green LD, Daligault H, Bruce D, Detter C, Tapia R, Han S, Goodwin L, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Land M, Chang YJ, Kyrpides NC, Ovchinnikova G, Hauser L, Lapidus A, Yan J, Bowman KS, da Costa MS, Rainey FA, Moe WM.

Stand Genomic Sci. 2012 May 25;6(2):251-64. doi: 10.4056/sigs.2806097. Epub 2012 May 15.

16.

Actinomyces naturae sp. nov., the first Actinomyces sp. isolated from a non-human or animal source.

Rao JU, Rash BA, Nobre MF, da Costa MS, Rainey FA, Moe WM.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):155-68. doi: 10.1007/s10482-011-9644-4. Epub 2011 Oct 1.

PMID:
21965039
17.

Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov.

Albuquerque L, França L, Rainey FA, Schumann P, Nobre MF, da Costa MS.

Syst Appl Microbiol. 2011 Dec;34(8):595-9. doi: 10.1016/j.syapm.2011.07.001. Epub 2011 Sep 6.

PMID:
21899973
18.

Hydrotalea sandarakina sp. nov., isolated from a hot spring runoff, and emended descriptions of the genus Hydrotalea and the species Hydrotalea flava.

Albuquerque L, Rainey FA, Nobre MF, da Costa MS.

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1603-8. doi: 10.1099/ijs.0.034496-0. Epub 2011 Sep 2.

PMID:
21890728
19.

Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov.

Moe WM, Stebbing RE, Rao JU, Bowman KS, Nobre MF, da Costa MS, Rainey FA.

Int J Syst Evol Microbiol. 2012 Jun;62(Pt 6):1369-76. doi: 10.1099/ijs.0.033753-0. Epub 2011 Aug 5.

PMID:
21828012
20.

Schleiferia thermophila gen. nov., sp. nov., a slightly thermophilic bacterium of the phylum 'Bacteroidetes' and the proposal of Schleiferiaceae fam. nov.

Albuquerque L, Rainey FA, Nobre MF, da Costa MS.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2450-5. doi: 10.1099/ijs.0.028852-0. Epub 2010 Nov 19.

PMID:
21097639
21.

Meiothermus granaticius sp. nov., a new slightly thermophilic red-pigmented species from the Azores.

Albuquerque L, Rainey FA, Nobre MF, da Costa MS.

Syst Appl Microbiol. 2010 Aug;33(5):243-6. doi: 10.1016/j.syapm.2010.04.001. Epub 2010 May 6.

PMID:
20451341
22.

Spirochaeta perfilievii sp. nov., an oxygen-tolerant, sulfide-oxidizing, sulfur- and thiosulfate-reducing spirochaete isolated from a saline spring.

Dubinina G, Grabovich M, Leshcheva N, Rainey FA, Gavrish E.

Int J Syst Evol Microbiol. 2011 Jan;61(Pt 1):110-7. doi: 10.1099/ijs.0.018333-0. Epub 2010 Feb 19.

PMID:
20173011
23.

Tepidamorphus gemmatus gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria.

Albuquerque L, Rainey FA, Pena A, Tiago I, Veríssimo A, Nobre MF, da Costa MS.

Syst Appl Microbiol. 2010 Mar;33(2):60-6. doi: 10.1016/j.syapm.2010.01.002. Epub 2010 Jan 29.

PMID:
20116192
24.

Detection and quantification of Dehalogenimonas and "Dehalococcoides" populations via PCR-based protocols targeting 16S rRNA genes.

Yan J, Rash BA, Rainey FA, Moe WM.

Appl Environ Microbiol. 2009 Dec;75(23):7560-4. doi: 10.1128/AEM.01938-09. Epub 2009 Oct 9.

25.

Clostridium hydrogeniformans sp. nov. and Clostridium cavendishii sp. nov., hydrogen-producing bacteria from chlorinated solvent-contaminated groundwater.

Bowman KS, Dupré RE, Rainey FA, Moe WM.

Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):358-63. doi: 10.1099/ijs.0.013169-0. Epub 2009 Aug 3.

PMID:
19651721
26.

Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater.

Moe WM, Yan J, Nobre MF, da Costa MS, Rainey FA.

Int J Syst Evol Microbiol. 2009 Nov;59(Pt 11):2692-7. doi: 10.1099/ijs.0.011502-0. Epub 2009 Jul 22.

PMID:
19625421
27.

Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium.

Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SK.

Int J Syst Evol Microbiol. 2009 Sep;59(Pt 9):2171-5. doi: 10.1099/ijs.0.007120-0. Epub 2009 Jul 15.

PMID:
19605731
28.

Isolation of novel bacteria within the Chloroflexi capable of reductive dechlorination of 1,2,3-trichloropropane.

Yan J, Rash BA, Rainey FA, Moe WM.

Environ Microbiol. 2009 Apr;11(4):833-43.

PMID:
19396942
29.

Production of hydrogen by Clostridium species in the presence of chlorinated solvents.

Bowman KS, Rainey FA, Moe WM.

FEMS Microbiol Lett. 2009 Jan;290(2):188-94. doi: 10.1111/j.1574-6968.2008.01419.x. Epub 2008 Nov 24.

30.

Description of four novel psychrophilic, ionizing radiation-sensitive Deinococcus species from alpine environments.

Callegan RP, Nobre MF, McTernan PM, Battista JR, Navarro-González R, McKay CP, da Costa MS, Rainey FA.

Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1252-8. doi: 10.1099/ijs.0.65405-0.

PMID:
18450723
31.

Elioraea tepidiphila gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria.

Albuquerque L, Rainey FA, Nobre MF, da Costa MS.

Int J Syst Evol Microbiol. 2008 Apr;58(Pt 4):773-8. doi: 10.1099/ijs.0.65294-0.

PMID:
18398168
32.

A new lineage of halophilic, wall-less, contractile bacteria from a brine-filled deep of the Red Sea.

Antunes A, Rainey FA, Wanner G, Taborda M, Pätzold J, Nobre MF, da Costa MS, Huber R.

J Bacteriol. 2008 May;190(10):3580-7. doi: 10.1128/JB.01860-07. Epub 2008 Mar 7.

33.

Biocatalytic and semisynthetic optimization of the anti-invasive tobacco (1S,2E,4R,6R,7E,11E)-2,7,11-cembratriene-4,6-diol.

El Sayed KA, Laphookhieo S, Baraka HN, Yousaf M, Hebert A, Bagaley D, Rainey FA, Muralidharan A, Thomas S, Shah GV.

Bioorg Med Chem. 2008 Mar 15;16(6):2886-93. doi: 10.1016/j.bmc.2007.12.056. Epub 2008 Jan 3.

PMID:
18222089
34.

Salirhabdus euzebyi gen. nov., sp. nov., a Gram-positive, halotolerant bacterium isolated from a sea salt evaporation pond.

Albuquerque L, Tiago I, Rainey FA, Taborda M, Nobre MF, Veríssimo A, da Costa MS.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1566-71.

PMID:
17625195
35.

Description of Azospira restricta sp. nov., a nitrogen-fixing bacterium isolated from groundwater.

Bae HS, Rash BA, Rainey FA, Nobre MF, Tiago I, da Costa MS, Moe WM.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1521-6.

PMID:
17625187
36.

Thermoanaerobacter sulfurigignens sp. nov., an anaerobic thermophilic bacterium that reduces 1 M thiosulfate to elemental sulfur and tolerates 90 mM sulfite.

Lee YJ, Dashti M, Prange A, Rainey FA, Rohde M, Whitman WB, Wiegel J.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1429-34.

PMID:
17625170
37.

Deinococcus peraridilitoris sp. nov., isolated from a coastal desert.

Rainey FA, Ferreira M, Nobre MF, Ray K, Bagaley D, Earl AM, Battista JR, Gómez-Silva B, McKay CP, da Costa MS.

Int J Syst Evol Microbiol. 2007 Jul;57(Pt 7):1408-12.

PMID:
17625166
38.

Marinobacter salsuginis sp. nov., isolated from the brine-seawater interface of the Shaban Deep, Red Sea.

Antunes A, França L, Rainey FA, Huber R, Nobre MF, Edwards KJ, da Costa MS.

Int J Syst Evol Microbiol. 2007 May;57(Pt 5):1035-40.

PMID:
17473254
39.
40.

Brooklawnia cerclae gen. nov., sp. nov., a propionate-forming bacterium isolated from chlorosolvent-contaminated groundwater.

Bae HS, Moe WM, Yan J, Tiago I, da Costa MS, Rainey FA.

Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1977-83.

PMID:
16902040
41.

Salinicoccus salsiraiae sp. nov.: a new moderately halophilic gram-positive bacterium isolated from salted skate.

França L, Rainey FA, Nobre MF, da Costa MS.

Extremophiles. 2006 Dec;10(6):531-6. Epub 2006 Jul 4.

PMID:
16819559
42.

Tepidicella xavieri gen. nov., sp. nov., a betaproteobacterium isolated from a hot spring runoff.

França L, Rainey FA, Nobre MF, da Costa MS.

Int J Syst Evol Microbiol. 2006 Apr;56(Pt 4):907-12.

PMID:
16585714
43.

Propionicicella superfundia gen. nov., sp. nov., a chlorosolvent-tolerant propionate-forming, facultative anaerobic bacterium isolated from contaminated groundwater.

Bae HS, Moe WM, Yan J, Tiago I, da Costa MS, Rainey FA.

Syst Appl Microbiol. 2006 Jul;29(5):404-13. Epub 2005 Dec 9.

PMID:
16338112
44.

Herminiimonas fonticola gen. nov., sp. nov., a Betaproteobacterium isolated from a source of bottled mineral water.

Fernandes C, Rainey FA, Nobre MF, Pinhal I, Folhas F, da Costa MS.

Syst Appl Microbiol. 2005 Sep;28(7):596-603.

PMID:
16156117
45.

Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample.

Rainey FA, Ray K, Ferreira M, Gatz BZ, Nobre MF, Bagaley D, Rash BA, Park MJ, Earl AM, Shank NC, Small AM, Henk MC, Battista JR, Kämpfer P, da Costa MS.

Appl Environ Microbiol. 2005 Sep;71(9):5225-35. Erratum in: Appl Environ Microbiol. 2005 Nov;71(11):7630.

46.

Truepera radiovictrix gen. nov., sp. nov., a new radiation resistant species and the proposal of Trueperaceae fam. nov.

Albuquerque L, Simões C, Nobre MF, Pino NM, Battista JR, Silva MT, Rainey FA, da Costa MS.

FEMS Microbiol Lett. 2005 Jun 15;247(2):161-9.

47.

Thioclava pacifica gen. nov., sp. nov., a novel facultatively autotrophic, marine, sulfur-oxidizing bacterium from a near-shore sulfidic hydrothermal area.

Sorokin DY, Tourova TP, Spiridonova EM, Rainey FA, Muyzer G.

Int J Syst Evol Microbiol. 2005 May;55(Pt 3):1069-75.

PMID:
15879235
48.

Bacillus amyloliquefaciens strains isolated from moisture-damaged buildings produced surfactin and a substance toxic to mammalian cells.

Mikkola R, Andersson MA, Grigoriev P, Teplova VV, Saris NE, Rainey FA, Salkinoja-Salonen MS.

Arch Microbiol. 2004 Apr;181(4):314-23. Epub 2004 Mar 11.

PMID:
15014930
49.

Mars-like soils in the Atacama Desert, Chile, and the dry limit of microbial life.

Navarro-González R, Rainey FA, Molina P, Bagaley DR, Hollen BJ, de la Rosa J, Small AM, Quinn RC, Grunthaner FJ, Cáceres L, Gomez-Silva B, McKay CP.

Science. 2003 Nov 7;302(5647):1018-21.

50.

Gamma-proteobacteria Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. infect protozoa and require activated charcoal for growth in laboratory media.

Santos P, Pinhal I, Rainey FA, Empadinhas N, Costa J, Fields B, Benson R, Veríssimo A, Da Costa MS.

Appl Environ Microbiol. 2003 Nov;69(11):6533-40.

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