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DESMAN: a new tool for de novo extraction of strains from metagenomes.

Quince C, Delmont TO, Raguideau S, Alneberg J, Darling AE, Collins G, Eren AM.

Genome Biol. 2017 Sep 21;18(1):181. doi: 10.1186/s13059-017-1309-9.


Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota.

Raguideau S, Plancade S, Pons N, Leclerc M, Laroche B.

PLoS Comput Biol. 2016 Dec 16;12(12):e1005252. doi: 10.1371/journal.pcbi.1005252. eCollection 2016 Dec.


Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii.

Miquel S, Leclerc M, Martin R, Chain F, Lenoir M, Raguideau S, Hudault S, Bridonneau C, Northen T, Bowen B, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P.

mBio. 2015 Apr 21;6(2). pii: e00300-15. doi: 10.1128/mBio.00300-15.

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