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Proteomics, glycomics, and glycoproteomics of matrisome molecules.

Raghunathan R, Sethi MK, Klein JA, Zaia J.

Mol Cell Proteomics. 2019 Aug 30. pii: mcp.R119.001543. doi: 10.1074/mcp.R119.001543. [Epub ahead of print] Review.


Correction to "Realizing the Photoene Reaction with Alkenes under Visible Light Irradiation and Bypassing the Favored [2 + 2]-Photocycloaddition".

Ahuja S, Raghunathan R, Kumarasamy E, Jockusch S, Sivaguru J.

J Am Chem Soc. 2019 Aug 14;141(32):12946. doi: 10.1021/jacs.9b07787. Epub 2019 Aug 2. No abstract available.


Assessing the acute effects of prenatal synthetic cannabinoid exposure on murine fetal brain vasculature using optical coherence tomography.

Raghunathan R, Liu CH, Kouka A, Singh M, Miranda RC, Larin KV.

J Biophotonics. 2019 Aug;12(8):e201900050. doi: 10.1002/jbio.201900050. Epub 2019 Apr 21.


Should you pick the PICC? Prolonged use of peripherally inserted central venous catheters in children with intestinal failure.

LaRusso K, Schaack G, Fung T, McGregor K, Long J, Dumas MP, Attari Z, Yousef Y, Girgis H, Raghunathan R, Sant'Anna A, Emil S.

J Pediatr Surg. 2019 May;54(5):999-1004. doi: 10.1016/j.jpedsurg.2019.01.052. Epub 2019 Feb 6.


Can We Improve Vaginal Tissue Healing Using Customized Devices: 3D Printing and Biomechanical Changes in Vaginal Tissue.

Hakim J, Smith PA, Singh M, Han Z, Raghunathan R, Wyman O, Guffey D, Larin KV, Cohn W, Dietrich JE.

Gynecol Obstet Invest. 2019;84(2):145-153. doi: 10.1159/000491696. Epub 2018 Sep 28.


Impact of Average, Local, and Electronic Structure on Visible Light Photocatalysis in Novel BiREWO6 (RE = Eu and Tb) Nanomaterials.

Shanbogh PP, Raghunathan R, Swain D, Feygenson M, Neuefeind J, Plaisier J, Narayana C, Rao A, Sundaram NG.

ACS Appl Mater Interfaces. 2018 Oct 24;10(42):35876-35887. doi: 10.1021/acsami.8b08452. Epub 2018 Oct 12.


Realizing the Photoene Reaction with Alkenes under Visible Light Irradiation and Bypassing the Favored [2 + 2]-Photocycloaddition.

Ahuja S, Raghunathan R, Kumarasamy E, Jockusch S, Sivaguru J.

J Am Chem Soc. 2018 Oct 17;140(41):13185-13189. doi: 10.1021/jacs.8b08100. Epub 2018 Oct 3. Erratum in: J Am Chem Soc. 2019 Aug 2;:.


Tissue biomechanics during cranial neural tube closure measured by Brillouin microscopy and optical coherence tomography.

Zhang J, Raghunathan R, Rippy J, Wu C, Finnell RH, Larin KV, Scarcelli G.

Birth Defects Res. 2019 Aug 15;111(14):991-998. doi: 10.1002/bdr2.1389. Epub 2018 Sep 21.


Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway.

Raghunathan R, Polinski NK, Klein JA, Hogan JD, Shao C, Khatri K, Leon D, McComb ME, Manfredsson FP, Sortwell CE, Zaia J.

Mol Cell Proteomics. 2018 Sep;17(9):1778-1787. doi: 10.1074/mcp.RA118.000680. Epub 2018 Jun 18.


Longitudinal Tracking of Sound Exposure and Hearing Aid Usage through Objective Data Logs.

Doyle JB, Raghunathan RR, Cellum I, Li G, Golub JS.

Otolaryngol Head Neck Surg. 2018 Jul;159(1):110-116. doi: 10.1177/0194599818766056. Epub 2018 Mar 27.


Emerging Biomarkers in Cutaneous Melanoma.

Eisenstein A, Gonzalez EC, Raghunathan R, Xu X, Wu M, McLean EO, McGee J, Ryu B, Alani RM.

Mol Diagn Ther. 2018 Apr;22(2):203-218. doi: 10.1007/s40291-018-0318-z. Review.


Enhanced mobility of non aqueous phase liquid (NAPL) during drying of wet sand.

Govindarajan D, Deshpande AP, Raghunathan R.

J Contam Hydrol. 2018 Feb;209:1-13. doi: 10.1016/j.jconhyd.2017.12.005. Epub 2018 Jan 4.


Evaluating the effects of maternal alcohol consumption on murine fetal brain vasculature using optical coherence tomography.

Raghunathan R, Wu C, Singh M, Liu CH, Miranda RC, Larin KV.

J Biophotonics. 2018 May;11(5):e201700238. doi: 10.1002/jbio.201700238. Epub 2018 Feb 26.


Evaluating biomechanical properties of murine embryos using Brillouin microscopy and optical coherence tomography.

Raghunathan R, Zhang J, Wu C, Rippy J, Singh M, Larin KV, Scarcelli G.

J Biomed Opt. 2017 Aug;22(8):1-6. doi: 10.1117/1.JBO.22.8.086013.


Realizing an Aza Paternò-Büchi Reaction.

Kumarasamy E, Kandappa SK, Raghunathan R, Jockusch S, Sivaguru J.

Angew Chem Int Ed Engl. 2017 Jun 12;56(25):7056-7061. doi: 10.1002/anie.201702273. Epub 2017 Apr 28.


Novel Glycopyrrolidine Compounds Inhibit Human Cancer Cell Proliferation and Induce Apoptotic Mode of Cell Death.

Bhoopalan H, Tentu S, R P, S P, Venu A, Raghunathan R, Pakala SB, Rayala SK, Venkatraman G.

Cancer Invest. 2017 Apr 21;35(4):215-224. doi: 10.1080/07357907.2016.1260139. Epub 2017 Mar 16.


Ultra-fast line-field low coherence holographic elastography using spatial phase shifting.

Liu CH, Schill A, Raghunathan R, Wu C, Singh M, Han Z, Nair A, Larin KV.

Biomed Opt Express. 2017 Jan 23;8(2):993-1004. doi: 10.1364/BOE.8.000993. eCollection 2017 Feb 1.


Assessing the effects of riboflavin/UV-A crosslinking on porcine corneal mechanical anisotropy with optical coherence elastography.

Singh M, Li J, Han Z, Raghunathan R, Nair A, Wu C, Liu CH, Aglyamov S, Twa MD, Larin KV.

Biomed Opt Express. 2016 Dec 19;8(1):349-366. doi: 10.1364/BOE.8.000349. eCollection 2017 Jan 1.


Tale of Twisted Molecules. Atropselective Photoreactions: Taming Light Induced Asymmetric Transformations through Non-biaryl Atropisomers.

Kumarasamy E, Ayitou AJ, Vallavoju N, Raghunathan R, Iyer A, Clay A, Kandappa SK, Sivaguru J.

Acc Chem Res. 2016 Dec 20;49(12):2713-2724. Epub 2016 Nov 17.


Impact of molecular structure on the physicochemical properties of starches isolated from different field pea (Pisum sativum L.) cultivars grown in Saskatchewan, Canada.

Raghunathan R, Hoover R, Waduge R, Liu Q, Warkentin TD.

Food Chem. 2017 Apr 15;221:1514-1521. doi: 10.1016/j.foodchem.2016.10.142. Epub 2016 Nov 1.


Transposed Paternò-Büchi Reaction.

Kumarasamy E, Raghunathan R, Kandappa SK, Sreenithya A, Jockusch S, Sunoj RB, Sivaguru J.

J Am Chem Soc. 2017 Jan 18;139(2):655-662. doi: 10.1021/jacs.6b05936. Epub 2016 Dec 30.


Optical coherence elastography assessment of corneal viscoelasticity with a modified Rayleigh-Lamb wave model.

Han Z, Li J, Singh M, Wu C, Liu CH, Raghunathan R, Aglyamov SR, Vantipalli S, Twa MD, Larin KV.

J Mech Behav Biomed Mater. 2017 Feb;66:87-94. doi: 10.1016/j.jmbbm.2016.11.004. Epub 2016 Nov 5.


Quantifying tissue viscoelasticity using optical coherence elastography and the Rayleigh wave model.

Han Z, Singh M, Aglyamov SR, Liu CH, Nair A, Raghunathan R, Wu C, Li J, Larin KV.

J Biomed Opt. 2016 Sep 1;21(9):90504. doi: 10.1117/1.JBO.21.9.090504.


Lorentz force optical coherence elastography.

Wu C, Singh M, Han Z, Raghunathan R, Liu CH, Li J, Schill A, Larin KV.

J Biomed Opt. 2016 Sep 1;21(9):90502. doi: 10.1117/1.JBO.21.9.090502.


Crystal structures of two substituted thia-zolidine derivatives.

Viswanathan V, Rao NS, Raghunathan R, Velmurugan D.

Acta Crystallogr E Crystallogr Commun. 2016 Jul 19;72(Pt 8):1126-9. doi: 10.1107/S2056989016011336. eCollection 2016 Aug 1.


Evaluating the Effects of Riboflavin/UV-A and Rose-Bengal/Green Light Cross-Linking of the Rabbit Cornea by Noncontact Optical Coherence Elastography.

Singh M, Li J, Han Z, Vantipalli S, Liu CH, Wu C, Raghunathan R, Aglyamov SR, Twa MD, Larin KV.

Invest Ophthalmol Vis Sci. 2016 Jul 1;57(9):OCT112-20. doi: 10.1167/iovs.15-18888.


Applicability, usability, and limitations of murine embryonic imaging with optical coherence tomography and optical projection tomography.

Singh M, Raghunathan R, Piazza V, Davis-Loiacono AM, Cable A, Vedakkan TJ, Janecek T, Frazier MV, Nair A, Wu C, Larina IV, Dickinson ME, Larin KV.

Biomed Opt Express. 2016 May 19;7(6):2295-310. doi: 10.1364/BOE.7.002295. eCollection 2016 Jun 1.


Impact of Staging With Positron-emission Tomography (PET) and Comorbidities on Management and Survival of American Veterans With Stage I-III Non-Small Cell Lung Cancer.

Raghunathan R, Cease K, Troeschel S, Zhao L, Gross M, Chen G, Chopra V, Ramnath N.

Am J Clin Oncol. 2018 May;41(5):513-518. doi: 10.1097/COC.0000000000000316.


Engaging electronic effects for atropselective [5+2]-photocycloaddition of maleimides.

Raghunathan R, Kumarasamy E, Jockusch S, Ugrinov A, Sivaguru J.

Chem Commun (Camb). 2016 Jul 7;52(53):8305-8. doi: 10.1039/c6cc02962k. Epub 2016 Jun 14.


Optical coherence tomography for embryonic imaging: a review.

Raghunathan R, Singh M, Dickinson ME, Larin KV.

J Biomed Opt. 2016 May 1;21(5):50902. doi: 10.1117/1.JBO.21.5.050902. Review.


Optically injected InAs/GaAs quantum dot laser for tunable photonic microwave generation.

Wang C, Raghunathan R, Schires K, Chan SC, Lester LF, Grillot F.

Opt Lett. 2016 Mar 15;41(6):1153-6. doi: 10.1364/OL.41.001153.


An expedient sequential one-pot four component synthesis of novel steroidal spiro-pyrrolidine heterocycles in ionic liquid.

Gavaskar D, Babu AR, Raghunathan R, Dharani M, Balasubramanian S.

Steroids. 2016 May;109:1-6. doi: 10.1016/j.steroids.2016.02.010. Epub 2016 Feb 27.


Neurogenic Niche Microglia Undergo Positional Remodeling and Progressive Activation Contributing to Age-Associated Reductions in Neurogenesis.

Solano Fonseca R, Mahesula S, Apple DM, Raghunathan R, Dugan A, Cardona A, O'Connor J, Kokovay E.

Stem Cells Dev. 2016 Apr 1;25(7):542-55. doi: 10.1089/scd.2015.0319. Epub 2016 Mar 16.


Perinatal inflammation/infection and its association with correction of metabolic acidosis in hypoxic-ischemic encephalopathy.

Johnson CT, Burd I, Raghunathan R, Northington FJ, Graham EM.

J Perinatol. 2016 Jun;36(6):448-52. doi: 10.1038/jp.2015.221. Epub 2016 Jan 21.


β-lactam substituted polycyclic fused pyrrolidine/pyrrolizidine derivatives eradicate C. albicans in an ex vivo human dentinal tubule model by inhibiting sterol 14-α demethylase and cAMP pathway.

Gowri M, Sofi Beaula W, Biswal J, Dhamodharan P, Saiharish R, Rohan prasad S, Pitani R, Kandaswamy D, Raghunathan R, Jeyakanthan J, Rayala SK, Venkatraman G.

Biochim Biophys Acta. 2016 Apr;1860(4):636-47. doi: 10.1016/j.bbagen.2015.12.020. Epub 2015 Dec 23.


Tumor Cell-Derived Periostin Regulates Cytokines That Maintain Breast Cancer Stem Cells.

Lambert AW, Wong CK, Ozturk S, Papageorgis P, Raghunathan R, Alekseyev Y, Gower AC, Reinhard BM, Abdolmaleky HM, Thiagalingam S.

Mol Cancer Res. 2016 Jan;14(1):103-13. doi: 10.1158/1541-7786.MCR-15-0079. Epub 2015 Oct 27.


Direct four-dimensional structural and functional imaging of cardiovascular dynamics in mouse embryos with 1.5 MHz optical coherence tomography.

Wang S, Singh M, Lopez AL 3rd, Wu C, Raghunathan R, Schill A, Li J, Larin KV, Larina IV.

Opt Lett. 2015 Oct 15;40(20):4791-4. doi: 10.1364/OL.40.004791.


Risk factors for periventricular white matter injury in very low birthweight neonates.

Tsimis ME, Johnson CT, Raghunathan RS, Northington FJ, Burd I, Graham EM.

Am J Obstet Gynecol. 2016 Mar;214(3):380.e1-6. doi: 10.1016/j.ajog.2015.09.108. Epub 2015 Nov 19.


Nonbiaryl and Heterobiaryl Atropisomers: Molecular Templates with Promise for Atropselective Chemical Transformations.

Kumarasamy E, Raghunathan R, Sibi MP, Sivaguru J.

Chem Rev. 2015 Oct 28;115(20):11239-300. doi: 10.1021/acs.chemrev.5b00136. Epub 2015 Sep 28. Review. No abstract available.


Crystal structure of methyl 7-phenyl-6a,7,7a,8,9,10-hexa-hydro-6H,11aH-thio-chromeno[3,4-b]pyrrolizine-6a--carbox-ylate.

Savithri MP, Suresh M, Raghunathan R, Raja R, SubbiahPandi A.

Acta Crystallogr E Crystallogr Commun. 2015 Jul 31;71(Pt 8):o627-8. doi: 10.1107/S2056989015014024. eCollection 2015 Aug 1.


Crystal structure of methyl 3-(3-fluoro-phen-yl)-1-methyl-1,3a,4,9b-tetra-hydro-3H-thio-chromeno[4,3-c]isoxazole-3a-carboxyl-ate.

Savithri MP, Suresh M, Raghunathan R, Vimala G, SubbiahPandi A.

Acta Crystallogr E Crystallogr Commun. 2015 Jul 25;71(Pt 8):o600-1. doi: 10.1107/S2056989015013651. eCollection 2015 Aug 1.


Crystal structures of two triazola-dioxola-benzena-cyclo-nona-phanes.

Viswanathan V, Rao NS, Raghunathan R, Velmurugan D.

Acta Crystallogr E Crystallogr Commun. 2015 Jun 24;71(Pt 7):827-31. doi: 10.1107/S205698901501141X. eCollection 2015 Jul 1.


Crystal structure of 14-methyl-11-(3-methyl-phen-yl)-12-oxa-8,14-di-aza-tetra-cyclo-[,10).0(2,7)]hexa-deca-2(7),3,5-triene-9,13-dione.

Savithri MP, Suresh M, Raghunathan R, Raja R, SubbiahPandi A.

Acta Crystallogr E Crystallogr Commun. 2015 May 7;71(Pt 6):o379-80. doi: 10.1107/S2056989015008129. eCollection 2015 Jun 1.


Crystal structure of methyl (2Z)-3-(4-chloro-phen-yl)-2-[(3-methyl-1H-indol-1-yl)meth-yl]prop-2-enoate.

Selvanayagam S, Sridhar B, Kathiravan S, Raghunathan R.

Acta Crystallogr E Crystallogr Commun. 2015 May 30;71(Pt 6):720-2. doi: 10.1107/S2056989015010002. eCollection 2015 Jun 1.


Crystal structure of 11-(2,3-di-meth-oxy-phen-yl)-14-methyl-12-oxa-8,14-di-aza-tetra-cyclo-[,10).0(2,7)]hexa-deca-2(7),3,5-triene-9,13-dione.

Savithri MP, Suresh M, Raghunathan R, Raja R, SubbiahPandi A.

Acta Crystallogr E Crystallogr Commun. 2015 Apr 9;71(Pt 5):o293-4. doi: 10.1107/S2056989015006386. eCollection 2015 May 1.


Epigenetic Silencing of SPINT2 Promotes Cancer Cell Motility via HGF-MET Pathway Activation in Melanoma.

Hwang S, Kim HE, Min M, Raghunathan R, Panova IP, Munshi R, Ryu B.

J Invest Dermatol. 2015 Sep;135(9):2283-2291. doi: 10.1038/jid.2015.160. Epub 2015 Apr 24.


Quantitative methods for reconstructing tissue biomechanical properties in optical coherence elastography: a comparison study.

Han Z, Li J, Singh M, Wu C, Liu CH, Wang S, Idugboe R, Raghunathan R, Sudheendran N, Aglyamov SR, Twa MD, Larin KV.

Phys Med Biol. 2015 May 7;60(9):3531-47. doi: 10.1088/0031-9155/60/9/3531. Epub 2015 Apr 10.


Crystal structure of ethyl (2S,2'R)-1'-benzyl-3-oxo-3H-di-spiro-[1-benzo-thio-phene-2,3'-pyrrolidine-2',11''-indeno[1,2-b]quinoxaline]-4'-carboxyl-ate.

Govindaraj J, Raja R, Suresh M, Raghunathan R, SubbiahPandi A.

Acta Crystallogr E Crystallogr Commun. 2015 Feb 21;71(Pt 3):o195-6. doi: 10.1107/S2056989015003187. eCollection 2015 Mar 1.

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