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Items: 15

1.

VIVA (VIsualization of VAriants): A VCF File Visualization Tool.

Tollefson GA, Schuster J, Gelin F, Agudelo A, Ragavendran A, Restrepo I, Stey P, Padbury J, Uzun A.

Sci Rep. 2019 Sep 2;9(1):12648. doi: 10.1038/s41598-019-49114-z.

2.

Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly.

Aneichyk T, Hendriks WT, Yadav R, Shin D, Gao D, Vaine CA, Collins RL, Domingo A, Currall B, Stortchevoi A, Multhaupt-Buell T, Penney EB, Cruz L, Dhakal J, Brand H, Hanscom C, Antolik C, Dy M, Ragavendran A, Underwood J, Cantsilieris S, Munson KM, Eichler EE, Acuña P, Go C, Jamora RDG, Rosales RL, Church DM, Williams SR, Garcia S, Klein C, Müller U, Wilhelmsen KC, Timmers HTM, Sapir Y, Wainger BJ, Henderson D, Ito N, Weisenfeld N, Jaffe D, Sharma N, Breakefield XO, Ozelius LJ, Bragg DC, Talkowski ME.

Cell. 2018 Feb 22;172(5):897-909.e21. doi: 10.1016/j.cell.2018.02.011.

3.

A novel microduplication of ARID1B: Clinical, genetic, and proteomic findings.

Seabra CM, Szoko N, Erdin S, Ragavendran A, Stortchevoi A, Maciel P, Lundberg K, Schlatzer D, Smith J, Talkowski ME, Gusella JF, Natowicz MR.

Am J Med Genet A. 2017 Sep;173(9):2478-2484. doi: 10.1002/ajmg.a.38327. Epub 2017 Jul 10.

4.

Defining the diverse spectrum of inversions, complex structural variation, and chromothripsis in the morbid human genome.

Collins RL, Brand H, Redin CE, Hanscom C, Antolik C, Stone MR, Glessner JT, Mason T, Pregno G, Dorrani N, Mandrile G, Giachino D, Perrin D, Walsh C, Cipicchio M, Costello M, Stortchevoi A, An JY, Currall BB, Seabra CM, Ragavendran A, Margolin L, Martinez-Agosto JA, Lucente D, Levy B, Sanders SJ, Wapner RJ, Quintero-Rivera F, Kloosterman W, Talkowski ME.

Genome Biol. 2017 Mar 6;18(1):36. doi: 10.1186/s13059-017-1158-6.

5.

Engineering microdeletions and microduplications by targeting segmental duplications with CRISPR.

Tai DJ, Ragavendran A, Manavalan P, Stortchevoi A, Seabra CM, Erdin S, Collins RL, Blumenthal I, Chen X, Shen Y, Sahin M, Zhang C, Lee C, Gusella JF, Talkowski ME.

Nat Neurosci. 2016 Mar;19(3):517-22. doi: 10.1038/nn.4235. Epub 2016 Feb 1.

6.

Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation.

Biagioli M, Ferrari F, Mendenhall EM, Zhang Y, Erdin S, Vijayvargia R, Vallabh SM, Solomos N, Manavalan P, Ragavendran A, Ozsolak F, Lee JM, Talkowski ME, Gusella JF, Macdonald ME, Park PJ, Seong IS.

Hum Mol Genet. 2015 May 1;24(9):2442-57. doi: 10.1093/hmg/ddv006. Epub 2015 Jan 8.

7.

CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors.

Sugathan A, Biagioli M, Golzio C, Erdin S, Blumenthal I, Manavalan P, Ragavendran A, Brand H, Lucente D, Miles J, Sheridan SD, Stortchevoi A, Kellis M, Haggarty SJ, Katsanis N, Gusella JF, Talkowski ME.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):E4468-77. doi: 10.1073/pnas.1405266111. Epub 2014 Oct 7.

8.

Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing.

Veres A, Gosis BS, Ding Q, Collins R, Ragavendran A, Brand H, Erdin S, Cowan CA, Talkowski ME, Musunuru K.

Cell Stem Cell. 2014 Jul 3;15(1):27-30. doi: 10.1016/j.stem.2014.04.020. Erratum in: Cell Stem Cell. 2014 Aug 7;15(2):254. Cowan, Chad A [added].

9.

Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.

Blumenthal I, Ragavendran A, Erdin S, Klei L, Sugathan A, Guide JR, Manavalan P, Zhou JQ, Wheeler VC, Levin JZ, Ernst C, Roeder K, Devlin B, Gusella JF, Talkowski ME.

Am J Hum Genet. 2014 Jun 5;94(6):870-83. doi: 10.1016/j.ajhg.2014.05.004.

10.

The importance of space, time, and stochasticity to the demography and management of Alliaria petiolata.

Evans JA, Davis AS, Raghu S, Ragavendran A, Landis DA, Schemske DW.

Ecol Appl. 2012 Jul;22(5):1497-511.

PMID:
22908709
11.

Environmental and lunar cues are predictive of the timing of river entry and spawning-site arrival in lake sturgeon Acipenser fulvescens.

Forsythe PS, Scribner KT, Crossman JA, Ragavendran A, Baker EA, Davis C, Smith KK.

J Fish Biol. 2012 Jul;81(1):35-53. doi: 10.1111/j.1095-8649.2012.03308.x. Epub 2012 Jun 12.

PMID:
22747803
12.

Generation of a multi-locus chicken introgression line to study the effects of genetic interactions on metabolic phenotypes in chickens.

Ek W, Marklund S, Ragavendran A, Siegel P, Muir W, Carlborg O.

Front Genet. 2012 Mar 2;3:29. doi: 10.3389/fgene.2012.00029. eCollection 2012.

13.

How do consumers deal with stoichiometric constraints? Lessons from functional genomics using Daphnia pulex.

Jeyasingh PD, Ragavendran A, Paland S, Lopez JA, Sterner RW, Colbourne JK.

Mol Ecol. 2011 Jun;20(11):2341-52. doi: 10.1111/j.1365-294X.2011.05102.x. Epub 2011 Apr 26.

PMID:
21521393
14.

Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs.

Steibel JP, Bates RO, Rosa GJ, Tempelman RJ, Rilington VD, Ragavendran A, Raney NE, Ramos AM, Cardoso FF, Edwards DB, Ernst CW.

PLoS One. 2011 Feb 8;6(2):e16766. doi: 10.1371/journal.pone.0016766.

15.

Suppressing Aedes albopictus, an emerging vector of dengue and chikungunya viruses, by a novel combination of a monomolecular film and an insect-growth regulator.

Nelder M, Kesavaraju B, Farajollahi A, Healy S, Unlu I, Crepeau T, Ragavendran A, Fonseca D, Gaugler R.

Am J Trop Med Hyg. 2010 May;82(5):831-7. doi: 10.4269/ajtmh.2010.09-0546.

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