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Surfaceome analysis of Australian epidemic Bordetella pertussis reveals potential vaccine antigens.

Luu LDW, Octavia S, Aitken C, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Vaccine. 2020 Jan 16;38(3):539-548. doi: 10.1016/j.vaccine.2019.10.062. Epub 2019 Nov 6.


Dendritic Cells (DCs) as "Fire Accelerants" of Hantaviral Pathogenesis.

Schönrich G, Raftery MJ.

Viruses. 2019 Sep 13;11(9). pii: E849. doi: 10.3390/v11090849. Review.


Development of a Human Cytomegalovirus (HCMV)-Based Therapeutic Cancer Vaccine Uncovers a Previously Unsuspected Viral Block of MHC Class I Antigen Presentation.

Abdelaziz MO, Ossmann S, Kaufmann AM, Leitner J, Steinberger P, Willimsky G, Raftery MJ, Schönrich G.

Front Immunol. 2019 Jul 30;10:1776. doi: 10.3389/fimmu.2019.01776. eCollection 2019.


The PD-1/PD-L1 Axis and Virus Infections: A Delicate Balance.

Schönrich G, Raftery MJ.

Front Cell Infect Microbiol. 2019 Jun 13;9:207. doi: 10.3389/fcimb.2019.00207. eCollection 2019. Review.


Unexpected host dependency of Antarctic Nanohaloarchaeota.

Hamm JN, Erdmann S, Eloe-Fadrosh EA, Angeloni A, Zhong L, Brownlee C, Williams TJ, Barton K, Carswell S, Smith MA, Brazendale S, Hancock AM, Allen MA, Raftery MJ, Cavicchioli R.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14661-14670. doi: 10.1073/pnas.1905179116. Epub 2019 Jun 28.


Extracellular signal-regulated kinase-1 phosphorylates early growth response-1 at serine 26.

Santiago FS, Sanchez-Guerrero E, Zhang G, Zhong L, Raftery MJ, Khachigian LM.

Biochem Biophys Res Commun. 2019 Mar 12;510(3):345-351. doi: 10.1016/j.bbrc.2019.01.019. Epub 2019 Jan 31.


Sucrose Metabolism in Haloarchaea: Reassessment Using Genomics, Proteomics, and Metagenomics.

Williams TJ, Allen MA, Liao Y, Raftery MJ, Cavicchioli R.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02935-18. doi: 10.1128/AEM.02935-18. Print 2019 Mar 15.


Hantavirus-Driven PD-L1/PD-L2 Upregulation: An Imperfect Viral Immune Evasion Mechanism.

Raftery MJ, Abdelaziz MO, Hofmann J, Schönrich G.

Front Immunol. 2018 Dec 3;9:2560. doi: 10.3389/fimmu.2018.02560. eCollection 2018.


Comparison of the Whole Cell Proteome and Secretome of Epidemic Bordetella pertussis Strains From the 2008-2012 Australian Epidemic Under Sulfate-Modulating Conditions.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Front Microbiol. 2018 Nov 27;9:2851. doi: 10.3389/fmicb.2018.02851. eCollection 2018.


CD1-Restricted T Cells During Persistent Virus Infections: "Sympathy for the Devil".

Schönrich G, Raftery MJ.

Front Immunol. 2018 Mar 19;9:545. doi: 10.3389/fimmu.2018.00545. eCollection 2018. Review.


Proteomic Adaptation of Australian Epidemic Bordetella pertussis.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Proteomics. 2018 Apr;18(8):e1700237. doi: 10.1002/pmic.201700237.


AZA-MS: a novel multiparameter mass spectrometry method to determine the intracellular dynamics of azacitidine therapy in vivo.

Unnikrishnan A, Vo ANQ, Pickford R, Raftery MJ, Nunez AC, Verma A, Hesson LB, Pimanda JE.

Leukemia. 2018 Apr;32(4):900-910. doi: 10.1038/leu.2017.340. Epub 2017 Nov 29.


Exploring the Immunopathogenesis of Viral Hemorrhagic Fever in Mice with a Humanized Immune System.

Schönrich G, Raftery MJ.

Front Immunol. 2017 Sep 26;8:1202. doi: 10.3389/fimmu.2017.01202. eCollection 2017. Review.


A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells.

Erdmann S, Tschitschko B, Zhong L, Raftery MJ, Cavicchioli R.

Nat Microbiol. 2017 Oct;2(10):1446-1455. doi: 10.1038/s41564-017-0009-2. Epub 2017 Aug 21.


Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

Strbenac D, Zhong L, Raftery MJ, Wang P, Wilson SR, Armstrong NJ, Yang JYH.

J Proteome Res. 2017 Jul 7;16(7):2359-2369. doi: 10.1021/acs.jproteome.6b00882. Epub 2017 Jun 5.


Herpesviral capture of immunomodulatory host genes.

Schönrich G, Abdelaziz MO, Raftery MJ.

Virus Genes. 2017 Dec;53(6):762-773. doi: 10.1007/s11262-017-1460-0. Epub 2017 Apr 27. Review.


Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi.

Williams TJ, Liao Y, Ye J, Kuchel RP, Poljak A, Raftery MJ, Cavicchioli R.

Environ Microbiol. 2017 Jun;19(6):2210-2227. doi: 10.1111/1462-2920.13705. Epub 2017 Mar 28.


Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi.

Liao Y, Williams TJ, Ye J, Charlesworth J, Burns BP, Poljak A, Raftery MJ, Cavicchioli R.

Sci Rep. 2016 Nov 22;6:37454. doi: 10.1038/srep37454.


Leukocyte immunoglobulin-like receptor B4 regulates key signalling molecules involved in FcγRI-mediated clathrin-dependent endocytosis and phagocytosis.

Park M, Raftery MJ, Thomas PS, Geczy CL, Bryant K, Tedla N.

Sci Rep. 2016 Oct 11;6:35085. doi: 10.1038/srep35085.


Neutrophil Extracellular Traps Go Viral.

Schönrich G, Raftery MJ.

Front Immunol. 2016 Sep 19;7:366. eCollection 2016. Review.


A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network.

Unnikrishnan A, Guan YF, Huang Y, Beck D, Thoms JA, Peirs S, Knezevic K, Ma S, de Walle IV, de Jong I, Ali Z, Zhong L, Raftery MJ, Taghon T, Larsson J, MacKenzie KL, Van Vlierberghe P, Wong JW, Pimanda JE.

Nucleic Acids Res. 2016 Dec 15;44(22):10644-10661. Epub 2016 Sep 6.


Isoaspartic acid is present at specific sites in myelin basic protein from multiple sclerosis patients: could this represent a trigger for disease onset?

Friedrich MG, Hancock SE, Raftery MJ, Truscott RJ.

Acta Neuropathol Commun. 2016 Aug 12;4(1):83. doi: 10.1186/s40478-016-0348-x.


Myocardial bioenergetic abnormalities in experimental uremia.

Chesser AM, Harwood SM, Raftery MJ, Yaqoob MM.

Int J Nephrol Renovasc Dis. 2016 May 24;9:129-37. doi: 10.2147/IJNRD.S89926. eCollection 2016.


Sin Nombre hantavirus nucleocapsid protein exhibits a metal-dependent DNA-specific endonucleolytic activity.

Möncke-Buchner E, Szczepek M, Bokelmann M, Heinemann P, Raftery MJ, Krüger DH, Reuter M.

Virology. 2016 Sep;496:67-76. doi: 10.1016/j.virol.2016.05.009. Epub 2016 Jun 1.


Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by Metaproteomics.

Tschitschko B, Williams TJ, Allen MA, Zhong L, Raftery MJ, Cavicchioli R.

Appl Environ Microbiol. 2016 May 16;82(11):3165-73. doi: 10.1128/AEM.00473-16. Print 2016 Jun 1.


Quantitative phosphotyrosine profiling of patient-derived xenografts identifies therapeutic targets in pediatric leukemia.

Dolai S, Sia KC, Robbins AK, Zhong L, Heatley SL, Vincent TL, Hochgräfe F, Sutton R, Kurmasheva RT, Revesz T, White DL, Houghton PJ, Smith MA, Teachey DT, Daly RJ, Raftery MJ, Lock RB.

Cancer Res. 2016 May;76(9):2766-2777. doi: 10.1158/0008-5472.CAN-15-2786. Epub 2016 Mar 9.


Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC-MS/MS.

Richards SL, Cawley AT, Cavicchioli R, Suann CJ, Pickford R, Raftery MJ.

Talanta. 2016 Apr 1;150:671-80. doi: 10.1016/j.talanta.2016.01.006. Epub 2016 Jan 7.


Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation.

Tschitschko B, Williams TJ, Allen MA, Páez-Espino D, Kyrpides N, Zhong L, Raftery MJ, Cavicchioli R.

ISME J. 2015 Sep;9(9):2094-107. doi: 10.1038/ismej.2015.110. Epub 2015 Jun 30.


Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa.

Alexova R, Dang TC, Fujii M, Raftery MJ, Waite TD, Ferrari BC, Neilan BA.

Environ Microbiol. 2016 Feb;18(2):401-13. doi: 10.1111/1462-2920.12958. Epub 2015 Aug 4.


Dendritic cells as Achilles' heel and Trojan horse during varicella zoster virus infection.

Schönrich G, Raftery MJ.

Front Microbiol. 2015 May 8;6:417. doi: 10.3389/fmicb.2015.00417. eCollection 2015.


Hantavirus-induced disruption of the endothelial barrier: neutrophils are on the payroll.

Schönrich G, Krüger DH, Raftery MJ.

Front Microbiol. 2015 Mar 25;6:222. doi: 10.3389/fmicb.2015.00222. eCollection 2015.


Hantavirus-induced pathogenesis in mice with a humanized immune system.

Kobak L, Raftery MJ, Voigt S, Kühl AA, Kilic E, Kurth A, Witkowski P, Hofmann J, Nitsche A, Schaade L, Krüger DH, Schönrich G.

J Gen Virol. 2015 Jun;96(Pt 6):1258-1263. doi: 10.1099/vir.0.000087. Epub 2015 Feb 12.


Cellular responses during morphological transformation in Azospirillum brasilense and Its flcA knockout mutant.

Hou X, McMillan M, Coumans JV, Poljak A, Raftery MJ, Pereg L.

PLoS One. 2014 Dec 12;9(12):e114435. doi: 10.1371/journal.pone.0114435. eCollection 2014.


Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus.

Kaakoush NO, Deshpande NP, Man SM, Burgos-Portugal JA, Khattak FA, Raftery MJ, Wilkins MR, Mitchell HM.

Infect Immun. 2015 Feb;83(2):832-45. doi: 10.1128/IAI.03012-14. Epub 2014 Dec 8.


Quantitative proteomics of delirium cerebrospinal fluid.

Poljak A, Hill M, Hall RJ, MacLullich AM, Raftery MJ, Tai J, Yan S, Caplan GA.

Transl Psychiatry. 2014 Nov 4;4:e477. doi: 10.1038/tp.2014.114.


Proteomic analysis of livers from fat-fed mice deficient in either PKCδ or PKCε identifies Htatip2 as a regulator of lipid metabolism.

Liao BM, Raddatz K, Zhong L, Parker BL, Raftery MJ, Schmitz-Peiffer C.

Proteomics. 2014 Nov;14(21-22):2578-87. doi: 10.1002/pmic.201400202. Epub 2014 Oct 14.


Ergocalciferol and microcirculatory function in chronic kidney disease and concomitant vitamin d deficiency: an exploratory, double blind, randomised controlled trial.

Dreyer G, Tucker AT, Harwood SM, Pearse RM, Raftery MJ, Yaqoob MM.

PLoS One. 2014 Jul 9;9(7):e99461. doi: 10.1371/journal.pone.0099461. eCollection 2014.


Human memory T cells from the bone marrow are resting and maintain long-lasting systemic memory.

Okhrimenko A, Grün JR, Westendorf K, Fang Z, Reinke S, von Roth P, Wassilew G, Kühl AA, Kudernatsch R, Demski S, Scheibenbogen C, Tokoyoda K, McGrath MA, Raftery MJ, Schönrich G, Serra A, Chang HD, Radbruch A, Dong J.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9229-34. doi: 10.1073/pnas.1318731111. Epub 2014 Jun 10.


β2 integrin mediates hantavirus-induced release of neutrophil extracellular traps.

Raftery MJ, Lalwani P, Krautkrӓmer E, Peters T, Scharffetter-Kochanek K, Krüger R, Hofmann J, Seeger K, Krüger DH, Schönrich G.

J Exp Med. 2014 Jun 30;211(7):1485-97. doi: 10.1084/jem.20131092. Epub 2014 Jun 2.


Determination of oxidative protein modifications using mass spectrometry.

Raftery MJ.

Redox Rep. 2014 Jul;19(4):140-7. doi: 10.1179/1351000214Y.0000000089. Epub 2014 Apr 4. Review.


NKT cells determine titer and subtype profile of virus-specific IgG antibodies during herpes simplex virus Infection.

Raftery MJ, Wolter E, Fillatreau S, Meisel H, Kaufmann SH, Schönrich G.

J Immunol. 2014 May 1;192(9):4294-302. doi: 10.4049/jimmunol.1300148. Epub 2014 Mar 28.


Elevated hepatic 11β-hydroxysteroid dehydrogenase type 1 induces insulin resistance in uremia.

Chapagain A, Caton PW, Kieswich J, Andrikopoulos P, Nayuni N, Long JH, Harwood SM, Webster SP, Raftery MJ, Thiemermann C, Walker BR, Seckl JR, Corder R, Yaqoob MM.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3817-22. doi: 10.1073/pnas.1312436111. Epub 2014 Feb 25.


Method development for quantification of five tear proteins using selected reaction monitoring (SRM) mass spectrometry.

Masoudi S, Zhong L, Raftery MJ, Stapleton FJ, Willcox MD.

Invest Ophthalmol Vis Sci. 2014 Feb 10;55(2):767-75. doi: 10.1167/iovs.13-12777.


Detection and quantification of dermorphin and selected analogs in equine urine.

Richards SL, Cawley AT, Raftery MJ.

Bioanalysis. 2013 Dec;5(24):2995-3007. doi: 10.4155/bio.13.281.


Phosphoproteomic profiling identifies focal adhesion kinase as a mediator of docetaxel resistance in castrate-resistant prostate cancer.

Lee BY, Hochgräfe F, Lin HM, Castillo L, Wu J, Raftery MJ, Martin Shreeve S, Horvath LG, Daly RJ.

Mol Cancer Ther. 2014 Jan;13(1):190-201. doi: 10.1158/1535-7163.MCT-13-0225-T. Epub 2013 Nov 5.


Shotgun redox proteomics: identification and quantitation of carbonylated proteins in the UVB-resistant marine bacterium, Photobacterium angustum S14.

Matallana-Surget S, Cavicchioli R, Fauconnier C, Wattiez R, Leroy B, Joux F, Raftery MJ, Lebaron P.

PLoS One. 2013 Jul 9;8(7):e68112. doi: 10.1371/journal.pone.0068112. Print 2013.


Hantaviral mechanisms driving HLA class I antigen presentation require both RIG-I and TRIF.

Lalwani P, Raftery MJ, Kobak L, Rang A, Giese T, Matthaei M, van den Elsen PJ, Wolff T, Krüger DH, Schönrich G.

Eur J Immunol. 2013 Oct;43(10):2566-76. doi: 10.1002/eji.201243066. Epub 2013 Jul 15.


Safety and tolerability of an intratumorally injected DNAzyme, Dz13, in patients with nodular basal-cell carcinoma: a phase 1 first-in-human trial (DISCOVER).

Cho EA, Moloney FJ, Cai H, Au-Yeung A, China C, Scolyer RA, Yosufi B, Raftery MJ, Deng JZ, Morton SW, Hammond PT, Arkenau HT, Damian DL, Francis DJ, Chesterman CN, Barnetson RS, Halliday GM, Khachigian LM.

Lancet. 2013 May 25;381(9880):1835-43. doi: 10.1016/S0140-6736(12)62166-7. Epub 2013 May 7.


The secretome of Helicobacter trogontum.

Kaakoush NO, Sirianni A, Raftery MJ, Mitchell HM.

Helicobacter. 2013 Aug;18(4):316-20. doi: 10.1111/hel.12045. Epub 2013 Feb 13.


Interconversion of the peptide isoforms of aspartate: stability of isoaspartates.

Hooi MY, Raftery MJ, Truscott RJ.

Mech Ageing Dev. 2013 Mar;134(3-4):103-9. doi: 10.1016/j.mad.2013.01.002. Epub 2013 Feb 4.


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