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Items: 34


Tissue and nitrogen-linked expression profiles of ammonium and nitrate transporters in maize.

Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN.

BMC Plant Biol. 2019 May 20;19(1):206. doi: 10.1186/s12870-019-1768-0.


Root Ideotype Influences Nitrogen Transport and Assimilation in Maize.

Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaiser BN.

Front Plant Sci. 2018 Apr 24;9:531. doi: 10.3389/fpls.2018.00531. eCollection 2018.


Variation for N Uptake System in Maize: Genotypic Response to N Supply.

Garnett T, Plett D, Conn V, Conn S, Rabie H, Rafalski JA, Dhugga K, Tester MA, Kaiser BN.

Front Plant Sci. 2015 Nov 9;6:936. doi: 10.3389/fpls.2015.00936. eCollection 2015.


Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes.

Zhang Q, Cheetamun R, Dhugga KS, Rafalski JA, Tingey SV, Shirley NJ, Taylor J, Hayes K, Beatty M, Bacic A, Burton RA, Fincher GB.

BMC Plant Biol. 2014 Jan 14;14:27. doi: 10.1186/1471-2229-14-27.


Can genomics boost productivity of orphan crops?

Varshney RK, Ribaut JM, Buckler ES, Tuberosa R, Rafalski JA, Langridge P.

Nat Biotechnol. 2012 Dec;30(12):1172-6. doi: 10.1038/nbt.2440. No abstract available.


Genome-wide expression quantitative trait loci (eQTL) analysis in maize.

Holloway B, Luck S, Beatty M, Rafalski JA, Li B.

BMC Genomics. 2011 Jun 30;12:336. doi: 10.1186/1471-2164-12-336.


Cell wall modifications in maize pulvini in response to gravitational stress.

Zhang Q, Pettolino FA, Dhugga KS, Rafalski JA, Tingey S, Taylor J, Shirley NJ, Hayes K, Beatty M, Abrams SR, Zaharia LI, Burton RA, Bacic A, Fincher GB.

Plant Physiol. 2011 Aug;156(4):2155-71. doi: 10.1104/pp.111.179606. Epub 2011 Jun 22.


A customized gene expression microarray reveals that the brittle stem phenotype fs2 of barley is attributable to a retroelement in the HvCesA4 cellulose synthase gene.

Burton RA, Ma G, Baumann U, Harvey AJ, Shirley NJ, Taylor J, Pettolino F, Bacic A, Beatty M, Simmons CR, Dhugga KS, Rafalski JA, Tingey SV, Fincher GB.

Plant Physiol. 2010 Aug;153(4):1716-28. doi: 10.1104/pp.110.158329. Epub 2010 Jun 7.


Association genetics in crop improvement.

Rafalski JA.

Curr Opin Plant Biol. 2010 Apr;13(2):174-80. doi: 10.1016/j.pbi.2009.12.004. Epub 2010 Jan 19.


The role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression.

Zhao Q, Thuillet AC, Uhlmann NK, Weber A, Rafalski JA, Allen SM, Tingey S, Doebley J.

Genetics. 2008 Apr;178(4):2133-43. doi: 10.1534/genetics.107.085506.


Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.

Salvi S, Sponza G, Morgante M, Tomes D, Niu X, Fengler KA, Meeley R, Ananiev EV, Svitashev S, Bruggemann E, Li B, Hainey CF, Radovic S, Zaina G, Rafalski JA, Tingey SV, Miao GH, Phillips RL, Tuberosa R.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11376-81. Epub 2007 Jun 26.


Combining expression and comparative evolutionary analysis. The COBRA gene family.

Brady SM, Song S, Dhugga KS, Rafalski JA, Benfey PN.

Plant Physiol. 2007 Jan;143(1):172-87. Epub 2006 Nov 10.


Plant genomics: present state and a perspective on future developments.

Rafalski JA.

Brief Funct Genomic Proteomic. 2002 Feb;1(1):80-94.


DNA array profiling of gene expression changes during maize embryo development.

Lee JM, Williams ME, Tingey SV, Rafalski JA.

Funct Integr Genomics. 2002 May;2(1-2):13-27. Epub 2002 Feb 19.


A genomic approach to gene fusion technology.

Van Dyk TK, Wei Y, Hanafey MK, Dolan M, Reeve MJ, Rafalski JA, Rothman-Denes LB, LaRossa RA.

Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2555-60. Epub 2001 Feb 13.


High-density microarray-mediated gene expression profiling of Escherichia coli.

Wei Y, Lee JM, Richmond C, Blattner FR, Rafalski JA, LaRossa RA.

J Bacteriol. 2001 Jan;183(2):545-56.


New experimental and computational approaches to the analysis of gene expression.

Rafalski JA, Hanafey M, Miao GH, Ching A, Lee JM, Dolan M, Tingey S.

Acta Biochim Pol. 1998;45(4):929-34. Review.


The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity.

Morgante M, Jurman I, Shi L, Zhu T, Keim P, Rafalski JA.

Chromosome Res. 1997 Sep;5(6):363-73.


Soybean chromosome painting: a strategy for somatic cytogenetics.

Shi L, Zhu T, Morgante M, Rafalski JA, Keim P.

J Hered. 1996 Jul-Aug;87(4):308-13.


Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome.

Powell W, Morgante M, Andre C, McNicol JW, Machray GC, Doyle JJ, Tingey SV, Rafalski JA.

Curr Biol. 1995 Sep 1;5(9):1023-9.


Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines.

Powell W, Morgante M, McDevitt R, Vendramin GG, Rafalski JA.

Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7759-63.


Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines.

Rafalski JA, Tingey SV.

Trends Genet. 1993 Aug;9(8):275-80. Review.


Genetic analysis using random amplified polymorphic DNA markers.

Williams JG, Hanafey MK, Rafalski JA, Tingey SV.

Methods Enzymol. 1993;218:704-40. No abstract available.


Global and local genome mapping in Arabidopsis thaliana by using recombinant inbred lines and random amplified polymorphic DNAs.

Reiter RS, Williams JG, Feldmann KA, Rafalski JA, Tingey SV, Scolnik PA.

Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1477-81.


DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV.

Nucleic Acids Res. 1990 Nov 25;18(22):6531-5.


Structure of the yeast HOM3 gene which encodes aspartokinase.

Rafalski JA, Falco SC.

J Biol Chem. 1990 Sep 5;265(25):15346. No abstract available.


Nucleotide sequence and encoded amino acid sequence of a genomic gene region for a low molecular weight glutenin.

Pitts EG, Rafalski JA, Hedgcoth C.

Nucleic Acids Res. 1988 Dec 9;16(23):11376. No abstract available.


Structure of the yeast HOM3 gene which encodes aspartokinase.

Rafalski JA, Falco SC.

J Biol Chem. 1988 Feb 15;263(5):2146-51. Erratum in: J Biol Chem 1990 Sep 5;265(25):15346.


Structure of wheat gamma-gliadin genes.

Rafalski JA.

Gene. 1986;43(3):221-9.


Conservation and variability of wheat alpha/beta-gliadin genes.

Sumner-Smith M, Rafalski JA, Sugiyama T, Stoll M, Söll D.

Nucleic Acids Res. 1985 Jun 11;13(11):3905-916.


Complete nucleotide sequence of the AIDS virus, HTLV-III.

Ratner L, Haseltine W, Patarca R, Livak KJ, Starcich B, Josephs SF, Doran ER, Rafalski JA, Whitehorn EA, Baumeister K, et al.

Nature. 1985 Jan 24-30;313(6000):277-84.


Developmentally regulated plant genes: the nucleotide sequence of a wheat gliadin genomic clone.

Rafalski JA, Scheets K, Metzler M, Peterson DM, Hedgcoth C, Söll DG.

EMBO J. 1984 Jun;3(6):1409-15.


Organization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin (Lupinus luteus).

Rafalski JA, Wiewiorowski M, Söll D.

Nucleic Acids Res. 1982 Dec 11;10(23):7635-42.

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