Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 42

1.

Escherichia coli clonobiome: assessing the strains diversity in feces and urine by deep amplicon sequencing.

Shevchenko SG, Radey M, Tchesnokova V, Kisiela D, Sokurenko EV.

Appl Environ Microbiol. 2019 Sep 20. pii: AEM.01866-19. doi: 10.1128/AEM.01866-19. [Epub ahead of print]

PMID:
31540992
2.

Pandemic fluoroquinolone resistant Escherichia coli clone ST1193 emerged via simultaneous homologous recombinations in 11 gene loci.

Tchesnokova V, Radey M, Chattopadhyay S, Larson L, Weaver JL, Kisiela D, Sokurenko EV.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14740-14748. doi: 10.1073/pnas.1903002116. Epub 2019 Jul 1.

PMID:
31262826
3.

Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles.

Nelson MT, Pope CE, Marsh RL, Wolter DJ, Weiss EJ, Hager KR, Vo AT, Brittnacher MJ, Radey MC, Hayden HS, Eng A, Miller SI, Borenstein E, Hoffman LR.

Cell Rep. 2019 Feb 19;26(8):2227-2240.e5. doi: 10.1016/j.celrep.2019.01.091.

4.

Informal Support among Low-income Mothers Post Welfare Reform: A Systematic Review.

Radey M.

J Child Fam Stud. 2018 Dec;27(12):3782-3805. doi: 10.1007/s10826-018-1223-0. Epub 2018 Aug 13.

5.

Social networks of unaccompanied women experiencing homelessness.

Groton DB, Radey M.

J Community Psychol. 2019 Jan;47(1):34-48. doi: 10.1002/jcop.22097. Epub 2018 Jun 12.

PMID:
30506932
6.

Client-Perpetrated Violence Among Frontline Child Welfare Workers.

Radey M, Wilke DJ.

J Interpers Violence. 2018 Nov 28:886260518812792. doi: 10.1177/0886260518812792. [Epub ahead of print]

PMID:
30484356
7.

Bifunctional Immunity Proteins Protect Bacteria against FtsZ-Targeting ADP-Ribosylating Toxins.

Ting SY, Bosch DE, Mangiameli SM, Radey MC, Huang S, Park YJ, Kelly KA, Filip SK, Goo YA, Eng JK, Allaire M, Veesler D, Wiggins PA, Peterson SB, Mougous JD.

Cell. 2018 Nov 15;175(5):1380-1392.e14. doi: 10.1016/j.cell.2018.09.037. Epub 2018 Oct 18.

PMID:
30343895
8.

Ixodes scapularis does not harbor a stable midgut microbiome.

Ross BD, Hayes B, Radey MC, Lee X, Josek T, Bjork J, Neitzel D, Paskewitz S, Chou S, Mougous JD.

ISME J. 2018 Nov;12(11):2596-2607. doi: 10.1038/s41396-018-0161-6. Epub 2018 Jun 26.

PMID:
29946195
9.

Revising the Lubben Social Network Scale for use in residential long-term care settings.

Munn J, Radey M, Brown K, Kim H.

J Evid Inf Soc Work. 2018 Jul-Aug;15(4):385-402. doi: 10.1080/23761407.2018.1460734. Epub 2018 Apr 19.

PMID:
29672239
10.

Conditional toxicity and synergy drive diversity among antibacterial effectors.

LaCourse KD, Peterson SB, Kulasekara HD, Radey MC, Kim J, Mougous JD.

Nat Microbiol. 2018 Apr;3(4):440-446. doi: 10.1038/s41564-018-0113-y. Epub 2018 Feb 19.

11.

Adapting a parenting intervention for parents aging out of the child welfare system: A systematic approach to expand the reach of an evidence-based intervention.

Holtrop K, Canto AI, Schelbe L, McWey LM, Radey M, Montgomery JE.

Am J Orthopsychiatry. 2018;88(3):386-398. doi: 10.1037/ort0000308. Epub 2018 Jan 18.

PMID:
29345476
12.

Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.

Akullian A, Montgomery JM, John-Stewart G, Miller SI, Hayden HS, Radey MC, Hager KR, Verani JR, Ochieng JB, Juma J, Katieno J, Fields B, Bigogo G, Audi A, Walson J.

PLoS Negl Trop Dis. 2018 Jan 12;12(1):e0006156. doi: 10.1371/journal.pntd.0006156. eCollection 2018 Jan.

13.

Unmarried Mothers' Postnatal School Enrollment: The Role and Intersection of Demographic and Socioeconomic Characteristics.

Radey M.

J Soc Serv Res. 2017;43(1):115-128. doi: 10.1080/01488376.2016.1216918. Epub 2016 Sep 8.

14.

The Landscape of Type VI Secretion across Human Gut Microbiomes Reveals Its Role in Community Composition.

Verster AJ, Ross BD, Radey MC, Bao Y, Goodman AL, Mougous JD, Borenstein E.

Cell Host Microbe. 2017 Sep 13;22(3):411-419.e4. doi: 10.1016/j.chom.2017.08.010.

15.

A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria.

Whitney JC, Peterson SB, Kim J, Pazos M, Verster AJ, Radey MC, Kulasekara HD, Ching MQ, Bullen NP, Bryant D, Goo YA, Surette MG, Borenstein E, Vollmer W, Mougous JD.

Elife. 2017 Jul 11;6. pii: e26938. doi: 10.7554/eLife.26938.

16.

Inactivation of Transcriptional Regulators during Within-Household Evolution of Escherichia coli.

Kisiela DI, Radey M, Paul S, Porter S, Polukhina K, Tchesnokova V, Shevchenko S, Chan D, Aziz M, Johnson TJ, Price LB, Johnson JR, Sokurenko EV.

J Bacteriol. 2017 Jun 13;199(13). pii: e00036-17. doi: 10.1128/JB.00036-17. Print 2017 Jul 1.

17.

Bacterial clonal diagnostics as a tool for evidence-based empiric antibiotic selection.

Tchesnokova V, Avagyan H, Rechkina E, Chan D, Muradova M, Haile HG, Radey M, Weissman S, Riddell K, Scholes D, Johnson JR, Sokurenko EV.

PLoS One. 2017 Mar 28;12(3):e0174132. doi: 10.1371/journal.pone.0174132. eCollection 2017.

18.

Restoring Cystic Fibrosis Transmembrane Conductance Regulator Function Reduces Airway Bacteria and Inflammation in People with Cystic Fibrosis and Chronic Lung Infections.

Hisert KB, Heltshe SL, Pope C, Jorth P, Wu X, Edwards RM, Radey M, Accurso FJ, Wolter DJ, Cooke G, Adam RJ, Carter S, Grogan B, Launspach JL, Donnelly SC, Gallagher CG, Bruce JE, Stoltz DA, Welsh MJ, Hoffman LR, McKone EF, Singh PK.

Am J Respir Crit Care Med. 2017 Jun 15;195(12):1617-1628. doi: 10.1164/rccm.201609-1954OC.

19.

Secreted Effectors Encoded within and outside of the Francisella Pathogenicity Island Promote Intramacrophage Growth.

Eshraghi A, Kim J, Walls AC, Ledvina HE, Miller CN, Ramsey KM, Whitney JC, Radey MC, Peterson SB, Ruhland BR, Tran BQ, Goo YA, Goodlett DR, Dove SL, Celli J, Veesler D, Mougous JD.

Cell Host Microbe. 2016 Nov 9;20(5):573-583. doi: 10.1016/j.chom.2016.10.008.

20.

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.

Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI.

PLoS One. 2016 Jul 8;11(7):e0158897. doi: 10.1371/journal.pone.0158897. eCollection 2016.

21.

Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa.

Armbruster CR, Wolter DJ, Mishra M, Hayden HS, Radey MC, Merrihew G, MacCoss MJ, Burns J, Wozniak DJ, Parsek MR, Hoffman LR.

MBio. 2016 May 24;7(3). pii: e00538-16. doi: 10.1128/mBio.00538-16.

22.

But Where Can We Buy an Ounce of Prevention? Sprawl, Access, and Fresh Fruit and Vegetable Consumption.

O'Dare Wilson K, Radey M.

Soc Work Public Health. 2016 Jul;31(4):316-27. doi: 10.1080/19371918.2015.1137507. Epub 2016 Apr 25.

PMID:
27111054
23.

Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress.

Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, Miller SI.

MBio. 2016 Mar 8;7(2):e00154. doi: 10.1128/mBio.00154-16.

24.

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E.

Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493.

25.

Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs.

Jorth P, Staudinger BJ, Wu X, Hisert KB, Hayden H, Garudathri J, Harding CL, Radey MC, Rezayat A, Bautista G, Berrington WR, Goddard AF, Zheng C, Angermeyer A, Brittnacher MJ, Kitzman J, Shendure J, Fligner CL, Mittler J, Aitken ML, Manoil C, Bruce JE, Yahr TL, Singh PK.

Cell Host Microbe. 2015 Sep 9;18(3):307-19. doi: 10.1016/j.chom.2015.07.006. Epub 2015 Aug 20.

26.

Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis.

Damman CJ, Brittnacher MJ, Westerhoff M, Hayden HS, Radey M, Hager KR, Marquis SR, Miller SI, Zisman TL.

PLoS One. 2015 Aug 19;10(8):e0133925. doi: 10.1371/journal.pone.0133925. eCollection 2015.

27.

Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.

Gallagher LA, Ramage E, Weiss EJ, Radey M, Hayden HS, Held KG, Huse HK, Zurawski DV, Brittnacher MJ, Manoil C.

J Bacteriol. 2015 Jun 15;197(12):2027-35. doi: 10.1128/JB.00131-15. Epub 2015 Apr 6.

28.

Cross-species comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei quorum-sensing regulons.

Majerczyk CD, Brittnacher MJ, Jacobs MA, Armour CD, Radey MC, Bunt R, Hayden HS, Bydalek R, Greenberg EP.

J Bacteriol. 2014 Nov;196(22):3862-71. doi: 10.1128/JB.01974-14. Epub 2014 Sep 2.

29.

Genomic analysis of the emergence of 20th century epidemic dysentery.

Rohmer L, Jacobs MA, Brittnacher MJ, Fong C, Hayden HS, Hocquet D, Weiss EJ, Radey M, Germani Y, Talukder KA, Hager AJ, Kemner JM, Sims-Day EH, Matamouros S, Hager KR, Miller SI.

BMC Genomics. 2014 May 10;15:355. doi: 10.1186/1471-2164-15-355.

30.

Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets.

Sun X, Olivier AK, Yi Y, Pope CE, Hayden HS, Liang B, Sui H, Zhou W, Hager KR, Zhang Y, Liu X, Yan Z, Fisher JT, Keiser NW, Song Y, Tyler SR, Goeken JA, Kinyon JM, Radey MC, Fligg D, Wang X, Xie W, Lynch TJ, Kaminsky PM, Brittnacher MJ, Miller SI, Parekh K, Meyerholz DK, Hoffman LR, Frana T, Stewart ZA, Engelhardt JF.

Am J Pathol. 2014 May;184(5):1309-22. doi: 10.1016/j.ajpath.2014.01.035. Epub 2014 Mar 15.

31.

Global analysis of the Burkholderia thailandensis quorum sensing-controlled regulon.

Majerczyk C, Brittnacher M, Jacobs M, Armour CD, Radey M, Schneider E, Phattarasokul S, Bunt R, Greenberg EP.

J Bacteriol. 2014 Apr;196(7):1412-24. doi: 10.1128/JB.01405-13. Epub 2014 Jan 24.

32.

Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis.

Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI.

Clin Infect Dis. 2014 Feb;58(3):396-9. doi: 10.1093/cid/cit715. Epub 2013 Oct 30.

33.
34.

Bactobolin resistance is conferred by mutations in the L2 ribosomal protein.

Chandler JR, Truong TT, Silva PM, Seyedsayamdost MR, Carr G, Radey M, Jacobs MA, Sims EH, Clardy J, Greenberg EP.

MBio. 2012 Dec 18;3(6). pii: e00499-12. doi: 10.1128/mBio.00499-12.

35.

Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death.

Ko DC, Gamazon ER, Shukla KP, Pfuetzner RA, Whittington D, Holden TD, Brittnacher MJ, Fong C, Radey M, Ogohara C, Stark AL, Akey JM, Dolan ME, Wurfel MM, Miller SI.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):E2343-52. doi: 10.1073/pnas.1206701109. Epub 2012 Jul 25.

36.

Identification of a p-coumarate degradation regulon in Rhodopseudomonas palustris by Xpression, an integrated tool for prokaryotic RNA-seq data processing.

Phattarasukol S, Radey MC, Lappala CR, Oda Y, Hirakawa H, Brittnacher MJ, Harwood CS.

Appl Environ Microbiol. 2012 Oct;78(19):6812-8. doi: 10.1128/AEM.01418-12. Epub 2012 Jul 13.

37.

Evolution of Burkholderia pseudomallei in recurrent melioidosis.

Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, Peacock SJ, Kaul R, Miller SI, Manoil C, Jacobs MA.

PLoS One. 2012;7(5):e36507. doi: 10.1371/journal.pone.0036507. Epub 2012 May 15.

38.

PGAT: a multistrain analysis resource for microbial genomes.

Brittnacher MJ, Fong C, Hayden HS, Jacobs MA, Radey M, Rohmer L.

Bioinformatics. 2011 Sep 1;27(17):2429-30. doi: 10.1093/bioinformatics/btr418. Epub 2011 Jul 15.

39.

GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.

Fong C, Ko DC, Wasnick M, Radey M, Miller SI, Brittnacher M.

Bioinformatics. 2010 Feb 15;26(4):560-4. doi: 10.1093/bioinformatics/btp714. Epub 2010 Jan 6.

40.

Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence.

Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, Chang J, Beskhlebnaya V, Waldor MK, Samadpour M, Whittam TS, Kaul R, Brittnacher M, Miller SI.

Infect Immun. 2009 Sep;77(9):3713-21. doi: 10.1128/IAI.00198-09. Epub 2009 Jun 29.

41.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

42.

Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.

Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, Haugen E, Bovee D, Zhou Y, Chang J, Levy R, Lim R, Gillett W, Guenthener D, Kang A, Shaffer SA, Taylor G, Chen J, Gallis B, D'Argenio DA, Forsman M, Olson MV, Goodlett DR, Kaul R, Miller SI, Brittnacher MJ.

Genome Biol. 2007;8(6):R102.

Supplemental Content

Support Center