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Items: 27

1.

The prehistoric peopling of Southeast Asia.

McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, Allentoft ME, Sato T, Malaspinas AS, Aghakhanian FA, Korneliussen T, Prohaska A, Margaryan A, de Barros Damgaard P, Kaewsutthi S, Lertrit P, Nguyen TMH, Hung HC, Minh Tran T, Nghia Truong H, Nguyen GH, Shahidan S, Wiradnyana K, Matsumae H, Shigehara N, Yoneda M, Ishida H, Masuyama T, Yamada Y, Tajima A, Shibata H, Toyoda A, Hanihara T, Nakagome S, Deviese T, Bacon AM, Duringer P, Ponche JL, Shackelford L, Patole-Edoumba E, Nguyen AT, Bellina-Pryce B, Galipaud JC, Kinaston R, Buckley H, Pottier C, Rasmussen S, Higham T, Foley RA, Lahr MM, Orlando L, Sikora M, Phipps ME, Oota H, Higham C, Lambert DM, Willerslev E.

Science. 2018 Jul 6;361(6397):88-92. doi: 10.1126/science.aat3628.

PMID:
29976827
2.

Something old, something borrowed: admixture and adaptation in human evolution.

Dannemann M, Racimo F.

Curr Opin Genet Dev. 2018 Jun 9;53:1-8. doi: 10.1016/j.gde.2018.05.009. [Epub ahead of print] Review.

PMID:
29894925
3.

Ancient Biomolecules and Evolutionary Inference.

Cappellini E, Prohaska A, Racimo F, Welker F, Pedersen MW, Allentoft ME, de Barros Damgaard P, Gutenbrunner P, Dunne J, Hammann S, Roffet-Salque M, Ilardo M, Moreno-Mayar JV, Wang Y, Sikora M, Vinner L, Cox J, Evershed RP, Willerslev E.

Annu Rev Biochem. 2018 Jun 20;87:1029-1060. doi: 10.1146/annurev-biochem-062917-012002. Epub 2018 Apr 25.

PMID:
29709200
4.

Physiological and Genetic Adaptations to Diving in Sea Nomads.

Ilardo MA, Moltke I, Korneliussen TS, Cheng J, Stern AJ, Racimo F, de Barros Damgaard P, Sikora M, Seguin-Orlando A, Rasmussen S, van den Munckhof ICL, Ter Horst R, Joosten LAB, Netea MG, Salingkat S, Nielsen R, Willerslev E.

Cell. 2018 Apr 19;173(3):569-580.e15. doi: 10.1016/j.cell.2018.03.054.

PMID:
29677510
5.

Detecting Polygenic Adaptation in Admixture Graphs.

Racimo F, Berg JJ, Pickrell JK.

Genetics. 2018 Apr;208(4):1565-1584. doi: 10.1534/genetics.117.300489. Epub 2018 Jan 18.

PMID:
29348143
6.

Natural Selection on Genes Related to Cardiovascular Health in High-Altitude Adapted Andeans.

Crawford JE, Amaru R, Song J, Julian CG, Racimo F, Cheng JY, Guo X, Yao J, Ambale-Venkatesh B, Lima JA, Rotter JI, Stehlik J, Moore LG, Prchal JT, Nielsen R.

Am J Hum Genet. 2017 Nov 2;101(5):752-767. doi: 10.1016/j.ajhg.2017.09.023.

7.

Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals.

Posth C, Wißing C, Kitagawa K, Pagani L, van Holstein L, Racimo F, Wehrberger K, Conard NJ, Kind CJ, Bocherens H, Krause J.

Nat Commun. 2017 Jul 4;8:16046. doi: 10.1038/ncomms16046.

8.

Joint Estimation of Relatedness Coefficients and Allele Frequencies from Ancient Samples.

Theunert C, Racimo F, Slatkin M.

Genetics. 2017 Jun;206(2):1025-1035. doi: 10.1534/genetics.117.200600. Epub 2017 Apr 10.

9.

Selection in Europeans on Fatty Acid Desaturases Associated with Dietary Changes.

Buckley MT, Racimo F, Allentoft ME, Jensen MK, Jonsson A, Huang H, Hormozdiari F, Sikora M, Marnetto D, Eskin E, Jørgensen ME, Grarup N, Pedersen O, Hansen T, Kraft P, Willerslev E, Nielsen R.

Mol Biol Evol. 2017 Jun 1;34(6):1307-1318. doi: 10.1093/molbev/msx103.

10.

Archaic Adaptive Introgression in TBX15/WARS2.

Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sánchez E, Nielsen R.

Mol Biol Evol. 2017 Mar 1;34(3):509-524. doi: 10.1093/molbev/msw283.

11.

Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Racimo F, Renaud G, Slatkin M.

PLoS Genet. 2016 Nov 8;12(11):e1006444. doi: 10.1371/journal.pgen.1006444. eCollection 2016 Nov.

12.

Signatures of Archaic Adaptive Introgression in Present-Day Human Populations.

Racimo F, Marnetto D, Huerta-Sánchez E.

Mol Biol Evol. 2017 Feb 1;34(2):296-317. doi: 10.1093/molbev/msw216.

13.

A genomic history of Aboriginal Australia.

Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E.

Nature. 2016 Oct 13;538(7624):207-214. doi: 10.1038/nature18299. Epub 2016 Sep 21.

PMID:
27654914
14.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D.

Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21.

15.

Ancient DNA and human history.

Slatkin M, Racimo F.

Proc Natl Acad Sci U S A. 2016 Jun 7;113(23):6380-7. doi: 10.1073/pnas.1524306113. Epub 2016 Jun 6.

16.

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Racimo F, Renaud G, Slatkin M.

PLoS Genet. 2016 Apr 6;12(4):e1005972. doi: 10.1371/journal.pgen.1005972. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Nov 8;12 (11):e1006444.

17.

Testing for Ancient Selection Using Cross-population Allele Frequency Differentiation.

Racimo F.

Genetics. 2016 Feb;202(2):733-50. doi: 10.1534/genetics.115.178095. Epub 2015 Nov 23.

18.

Greenlandic Inuit show genetic signatures of diet and climate adaptation.

Fumagalli M, Moltke I, Grarup N, Racimo F, Bjerregaard P, Jørgensen ME, Korneliussen TS, Gerbault P, Skotte L, Linneberg A, Christensen C, Brandslund I, Jørgensen T, Huerta-Sánchez E, Schmidt EB, Pedersen O, Hansen T, Albrechtsen A, Nielsen R.

Science. 2015 Sep 18;349(6254):1343-7. doi: 10.1126/science.aab2319.

19.

Evidence for archaic adaptive introgression in humans.

Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E.

Nat Rev Genet. 2015 Jun;16(6):359-71. doi: 10.1038/nrg3936. Epub 2015 May 12. Review.

20.

Long-Term Balancing Selection in LAD1 Maintains a Missense Trans-Species Polymorphism in Humans, Chimpanzees, and Bonobos.

Teixeira JC, de Filippo C, Weihmann A, Meneu JR, Racimo F, Dannemann M, Nickel B, Fischer A, Halbwax M, Andre C, Atencia R, Meyer M, Parra G, Pääbo S, Andrés AM.

Mol Biol Evol. 2015 May;32(5):1186-96. doi: 10.1093/molbev/msv007. Epub 2015 Jan 19.

PMID:
25605789
21.

Approximation to the distribution of fitness effects across functional categories in human segregating polymorphisms.

Racimo F, Schraiber JG.

PLoS Genet. 2014 Nov 6;10(11):e1004697. doi: 10.1371/journal.pgen.1004697. eCollection 2014 Nov.

22.

A test for ancient selective sweeps and an application to candidate sites in modern humans.

Racimo F, Kuhlwilm M, Slatkin M.

Mol Biol Evol. 2014 Dec;31(12):3344-58. doi: 10.1093/molbev/msu255. Epub 2014 Aug 28.

23.

Patterns of coding variation in the complete exomes of three Neandertals.

Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, Stenzel U, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajković D, Kucan Ž, Gušic I, Shunkov MV, Derevianko AP, Viola B, Meyer M, Kelso J, Andrés AM, Pääbo S.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6666-71. doi: 10.1073/pnas.1405138111. Epub 2014 Apr 21.

24.

Importance of positioning for microbial evolution.

Kim W, Racimo F, Schluter J, Levy SB, Foster KR.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):E1639-47. doi: 10.1073/pnas.1323632111. Epub 2014 Apr 8.

25.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

26.

A high-coverage genome sequence from an archaic Denisovan individual.

Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S.

Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30.

27.

Birds have paedomorphic dinosaur skulls.

Bhullar BA, Marugán-Lobón J, Racimo F, Bever GS, Rowe TB, Norell MA, Abzhanov A.

Nature. 2012 Jul 12;487(7406):223-6. doi: 10.1038/nature11146.

PMID:
22722850

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