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Items: 1 to 50 of 176

1.

Author Correction: Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2019 Feb;16(2):205. doi: 10.1038/s41592-018-0297-3.

PMID:
30602782
2.

Determinants of the assembly, integrity and maintenance of the endoplasmic reticulum-peroxisome tether.

Knoblach B, Rachubinski RA.

Traffic. 2018 Dec 30. doi: 10.1111/tra.12635. [Epub ahead of print]

PMID:
30597694
3.

Distinct Roles for Peroxisomal Targeting Signal Receptors Pex5 and Pex7 in Drosophila.

Di Cara F, Rachubinski RA, Simmonds AJ.

Genetics. 2019 Jan;211(1):141-149. doi: 10.1534/genetics.118.301628. Epub 2018 Nov 2.

PMID:
30389805
4.

Dysfunctional peroxisomes compromise gut structure and host defense by increased cell death and Tor-dependent autophagy.

Di Cara F, Bülow MH, Simmonds AJ, Rachubinski RA.

Mol Biol Cell. 2018 Nov 1;29(22):2766-2783. doi: 10.1091/mbc.E18-07-0434. Epub 2018 Sep 6.

5.

Reconstitution of human peroxisomal β-oxidation in yeast.

Knoblach B, Rachubinski RA.

FEMS Yeast Res. 2018 Dec 1;18(8). doi: 10.1093/femsyr/foy092.

PMID:
30124827
6.

Genome-wide SWAp-Tag yeast libraries for proteome exploration.

Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M.

Nat Methods. 2018 Aug;15(8):617-622. doi: 10.1038/s41592-018-0044-9. Epub 2018 Jul 9. Erratum in: Nat Methods. 2019 Feb;16(2):205.

7.

Peroxisome-Mediated Metabolism Is Required for Immune Response to Microbial Infection.

Di Cara F, Sheshachalam A, Braverman NE, Rachubinski RA, Simmonds AJ.

Immunity. 2018 Apr 17;48(4):832-833. doi: 10.1016/j.immuni.2018.03.035. No abstract available.

PMID:
29669255
8.

ESCRT-III is required for scissioning new peroxisomes from the endoplasmic reticulum.

Mast FD, Herricks T, Strehler KM, Miller LR, Saleem RA, Rachubinski RA, Aitchison JD.

J Cell Biol. 2018 Jun 4;217(6):2087-2102. doi: 10.1083/jcb.201706044. Epub 2018 Mar 27.

9.

Involvement of SNARE protein Ykt6 in glycosome biogenesis in Trypanosoma brucei.

Banerjee H, Rachubinski RA.

Mol Biochem Parasitol. 2017 Dec;218:28-37. doi: 10.1016/j.molbiopara.2017.10.003. Epub 2017 Oct 28.

PMID:
29107734
10.

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol. 2017 Sep 11;15(9):e2003769. doi: 10.1371/journal.pbio.2003769. eCollection 2017 Sep.

11.

Peroxisome-Mediated Metabolism Is Required for Immune Response to Microbial Infection.

Di Cara F, Sheshachalam A, Braverman NE, Rachubinski RA, Simmonds AJ.

Immunity. 2017 Jul 18;47(1):93-106.e7. doi: 10.1016/j.immuni.2017.06.016. Erratum in: Immunity. 2018 Apr 17;48(4):832-833.

12.

Peroxins Pex30 and Pex29 Dynamically Associate with Reticulons to Regulate Peroxisome Biogenesis from the Endoplasmic Reticulum.

Mast FD, Jamakhandi A, Saleem RA, Dilworth DJ, Rogers RS, Rachubinski RA, Aitchison JD.

J Biol Chem. 2016 Jul 22;291(30):15408-27. doi: 10.1074/jbc.M116.728154. Epub 2016 Apr 29.

13.

How peroxisomes partition between cells. A story of yeast, mammals and filamentous fungi.

Knoblach B, Rachubinski RA.

Curr Opin Cell Biol. 2016 Aug;41:73-80. doi: 10.1016/j.ceb.2016.04.004. Epub 2016 Apr 26. Review.

PMID:
27128775
14.

A Systematic Cell-Based Analysis of Localization of Predicted Drosophila Peroxisomal Proteins.

Baron MN, Klinger CM, Rachubinski RA, Simmonds AJ.

Traffic. 2016 May;17(5):536-53. doi: 10.1111/tra.12384. Epub 2016 Mar 1.

15.

Sharing with your children: Mechanisms of peroxisome inheritance.

Knoblach B, Rachubinski RA.

Biochim Biophys Acta. 2016 May;1863(5):1014-8. doi: 10.1016/j.bbamcr.2015.11.023. Epub 2015 Nov 24. Review.

16.

Motors, anchors, and connectors: orchestrators of organelle inheritance.

Knoblach B, Rachubinski RA.

Annu Rev Cell Dev Biol. 2015;31:55-81. doi: 10.1146/annurev-cellbio-100814-125553. Epub 2015 Oct 5. Review.

PMID:
26443192
17.

Flavivirus Infection Impairs Peroxisome Biogenesis and Early Antiviral Signaling.

You J, Hou S, Malik-Soni N, Xu Z, Kumar A, Rachubinski RA, Frappier L, Hobman TC.

J Virol. 2015 Dec;89(24):12349-61. doi: 10.1128/JVI.01365-15. Epub 2015 Sep 30.

18.

Signaling dynamics and peroxisomes.

Mast FD, Rachubinski RA, Aitchison JD.

Curr Opin Cell Biol. 2015 Aug;35:131-6. doi: 10.1016/j.ceb.2015.05.002. Epub 2015 May 29. Review.

19.

An ancestral role in peroxisome assembly is retained by the divisional peroxin Pex11 in the yeast Yarrowia lipolytica.

Chang J, Klute MJ, Tower RJ, Mast FD, Dacks JB, Rachubinski RA.

J Cell Sci. 2015 Apr 1;128(7):1327-40. doi: 10.1242/jcs.157743. Epub 2015 Feb 6.

20.

Sharing the cell's bounty - organelle inheritance in yeast.

Knoblach B, Rachubinski RA.

J Cell Sci. 2015 Feb 15;128(4):621-30. doi: 10.1242/jcs.151423. Epub 2015 Jan 22. Review.

21.

Origin and spatiotemporal dynamics of the peroxisomal endomembrane system.

Titorenko VI, Rachubinski RA.

Front Physiol. 2014 Dec 16;5:493. doi: 10.3389/fphys.2014.00493. eCollection 2014. No abstract available.

22.

Transport and retention mechanisms govern lipid droplet inheritance in Saccharomyces cerevisiae.

Knoblach B, Rachubinski RA.

Traffic. 2015 Mar;16(3):298-309. doi: 10.1111/tra.12247. Epub 2015 Jan 6.

23.

Evolutionary mechanisms for establishing eukaryotic cellular complexity.

Mast FD, Barlow LD, Rachubinski RA, Dacks JB.

Trends Cell Biol. 2014 Jul;24(7):435-42. doi: 10.1016/j.tcb.2014.02.003. Epub 2014 Mar 19. Review.

PMID:
24656655
24.

Doing the math: How yeast cells maintain their peroxisome populations.

Knoblach B, Rachubinski RA.

Commun Integr Biol. 2013 Nov 1;6(6):e26901. doi: 10.4161/cib.26901. Epub 2013 Nov 13.

25.

Tombusvirus replication depends on Sec39p endoplasmic reticulum-associated transport protein.

Sasvari Z, Gonzalez PA, Rachubinski RA, Nagy PD.

Virology. 2013 Dec;447(1-2):21-31. doi: 10.1016/j.virol.2013.07.039. Epub 2013 Sep 14.

26.

Dynein light chain interaction with the peroxisomal import docking complex modulates peroxisome biogenesis in yeast.

Chang J, Tower RJ, Lancaster DL, Rachubinski RA.

J Cell Sci. 2013 Oct 15;126(Pt 20):4698-706. doi: 10.1242/jcs.129056. Epub 2013 Aug 13.

27.

An ER-peroxisome tether exerts peroxisome population control in yeast.

Knoblach B, Sun X, Coquelle N, Fagarasanu A, Poirier RL, Rachubinski RA.

EMBO J. 2013 Sep 11;32(18):2439-53. doi: 10.1038/emboj.2013.170. Epub 2013 Jul 30.

28.

PEX7 and EBP50 target iNOS to the peroxisome in hepatocytes.

Loughran PA, Stolz DB, Barrick SR, Wheeler DS, Friedman PA, Rachubinski RA, Watkins SC, Billiar TR.

Nitric Oxide. 2013 May 31;31:9-19. doi: 10.1016/j.niox.2013.02.084. Epub 2013 Mar 5.

29.

Chaperone proteins select and maintain [PIN+] prion conformations in Saccharomyces cerevisiae.

Lancaster DL, Dobson CM, Rachubinski RA.

J Biol Chem. 2013 Jan 11;288(2):1266-76. doi: 10.1074/jbc.M112.377564. Epub 2012 Nov 12.

30.

Emergent complexity in Myosin V-based organelle inheritance.

Mast FD, Rachubinski RA, Dacks JB.

Mol Biol Evol. 2012 Mar;29(3):975-84. doi: 10.1093/molbev/msr264. Epub 2011 Oct 31.

PMID:
22046000
31.

A Drosophila model for the Zellweger spectrum of peroxisome biogenesis disorders.

Mast FD, Li J, Virk MK, Hughes SC, Simmonds AJ, Rachubinski RA.

Dis Model Mech. 2011 Sep;4(5):659-72. doi: 10.1242/dmm.007419. Epub 2011 Jun 13.

32.

The peroxin Pex34p functions with the Pex11 family of peroxisomal divisional proteins to regulate the peroxisome population in yeast.

Tower RJ, Fagarasanu A, Aitchison JD, Rachubinski RA.

Mol Biol Cell. 2011 May 15;22(10):1727-38. doi: 10.1091/mbc.E11-01-0084. Epub 2011 Mar 25.

33.

Peroxisome biogenesis: something old, something new, something borrowed.

Mast FD, Fagarasanu A, Knoblach B, Rachubinski RA.

Physiology (Bethesda). 2010 Dec;25(6):347-56. doi: 10.1152/physiol.00025.2010. Review.

34.

Expression of the Salmonella spp. virulence factor SifA in yeast alters Rho1 activity on peroxisomes.

Vinh DB, Ko DC, Rachubinski RA, Aitchison JD, Miller SI.

Mol Biol Cell. 2010 Oct 15;21(20):3567-77. doi: 10.1091/mbc.E10-06-0482. Epub 2010 Aug 25.

35.

Molecular mechanisms of organelle inheritance: lessons from peroxisomes in yeast.

Fagarasanu A, Mast FD, Knoblach B, Rachubinski RA.

Nat Rev Mol Cell Biol. 2010 Sep;11(9):644-54. doi: 10.1038/nrm2960. Epub 2010 Aug 18. Review.

PMID:
20717147
36.

Genome-wide analysis of effectors of peroxisome biogenesis.

Saleem RA, Long-O'Donnell R, Dilworth DJ, Armstrong AM, Jamakhandi AP, Wan Y, Knijnenburg TA, Niemistö A, Boyle J, Rachubinski RA, Shmulevich I, Aitchison JD.

PLoS One. 2010 Aug 4;5(8):e11953. doi: 10.1371/journal.pone.0011953.

37.

Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction.

Saleem RA, Rogers RS, Ratushny AV, Dilworth DJ, Shannon PT, Shteynberg D, Wan Y, Moritz RL, Nesvizhskii AI, Rachubinski RA, Aitchison JD.

Mol Cell Proteomics. 2010 Sep;9(9):2076-88. doi: 10.1074/mcp.M000116-MCP201. Epub 2010 Apr 15.

38.

Phosphorylation-dependent activation of peroxisome proliferator protein PEX11 controls peroxisome abundance.

Knoblach B, Rachubinski RA.

J Biol Chem. 2010 Feb 26;285(9):6670-80. doi: 10.1074/jbc.M109.094805. Epub 2009 Dec 22.

39.

Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress.

Jung S, Marelli M, Rachubinski RA, Goodlett DR, Aitchison JD.

J Biol Chem. 2010 Feb 26;285(9):6739-49. doi: 10.1074/jbc.M109.058552. Epub 2009 Dec 21.

40.

Pex3 peroxisome biogenesis proteins function in peroxisome inheritance as class V myosin receptors.

Chang J, Mast FD, Fagarasanu A, Rachubinski DA, Eitzen GA, Dacks JB, Rachubinski RA.

J Cell Biol. 2009 Oct 19;187(2):233-46. doi: 10.1083/jcb.200902117. Epub 2009 Oct 12.

41.

Myosin-driven peroxisome partitioning in S. cerevisiae.

Fagarasanu A, Mast FD, Knoblach B, Jin Y, Brunner MJ, Logan MR, Glover JN, Eitzen GA, Aitchison JD, Weisman LS, Rachubinski RA.

J Cell Biol. 2009 Aug 24;186(4):541-54. doi: 10.1083/jcb.200904050. Epub 2009 Aug 17.

42.

Endoplasmic reticulum-associated secretory proteins Sec20p, Sec39p, and Dsl1p are involved in peroxisome biogenesis.

Perry RJ, Mast FD, Rachubinski RA.

Eukaryot Cell. 2009 Jun;8(6):830-43. doi: 10.1128/EC.00024-09. Epub 2009 Apr 3.

43.

Spatiotemporal dynamics of the ER-derived peroxisomal endomembrane system.

Titorenko VI, Rachubinski RA.

Int Rev Cell Mol Biol. 2009;272:191-244. doi: 10.1016/S1937-6448(08)01605-5. Review.

PMID:
19121819
44.

Genome-wide analysis of signaling networks regulating fatty acid-induced gene expression and organelle biogenesis.

Saleem RA, Knoblach B, Mast FD, Smith JJ, Boyle J, Dobson CM, Long-O'Donnell R, Rachubinski RA, Aitchison JD.

J Cell Biol. 2008 Apr 21;181(2):281-92. doi: 10.1083/jcb.200710009.

45.

Cargo-selected transport from the mitochondria to peroxisomes is mediated by vesicular carriers.

Neuspiel M, Schauss AC, Braschi E, Zunino R, Rippstein P, Rachubinski RA, Andrade-Navarro MA, McBride HM.

Curr Biol. 2008 Jan 22;18(2):102-8. doi: 10.1016/j.cub.2007.12.038.

46.

Orchestrating organelle inheritance in Saccharomyces cerevisiae.

Fagarasanu A, Rachubinski RA.

Curr Opin Microbiol. 2007 Dec;10(6):528-38. doi: 10.1016/j.mib.2007.10.002. Review.

PMID:
18177627
47.
48.
49.

Transcriptional responses to fatty acid are coordinated by combinatorial control.

Smith JJ, Ramsey SA, Marelli M, Marzolf B, Hwang D, Saleem RA, Rachubinski RA, Aitchison JD.

Mol Syst Biol. 2007;3:115. Epub 2007 Jun 5.

50.

Maintaining peroxisome populations: a story of division and inheritance.

Fagarasanu A, Fagarasanu M, Rachubinski RA.

Annu Rev Cell Dev Biol. 2007;23:321-44. Review.

PMID:
17506702

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