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Items: 1 to 50 of 112

1.

A simple protocol for the isolation of proteorhodopsins of the dinoflagellate Oxyrrhis marina.

Rhiel E, Nguyen T, Wöhlbrand L, Rabus R.

J Basic Microbiol. 2020 Apr;60(4):351-361. doi: 10.1002/jobm.201900594. Epub 2020 Jan 21.

PMID:
31960981
2.

Nanomolar Responsiveness of an Anaerobic Degradation Specialist to Alkylphenol Pollutants.

Vagts J, Weiten A, Scheve S, Kalvelage K, Swirski S, Wöhlbrand L, Neidhardt J, Winklhofer M, Rabus R.

J Bacteriol. 2020 Feb 11;202(5). pii: e00595-19. doi: 10.1128/JB.00595-19. Print 2020 Feb 11.

PMID:
31843798
3.

Amino Acid and Sugar Catabolism in the Marine Bacterium Phaeobacter inhibens DSM 17395 from an Energetic Viewpoint.

Wünsch D, Trautwein K, Scheve S, Hinrichs C, Feenders C, Blasius B, Schomburg D, Rabus R.

Appl Environ Microbiol. 2019 Nov 27;85(24). pii: e02095-19. doi: 10.1128/AEM.02095-19. Print 2019 Dec 15.

PMID:
31604772
4.

Metabolites of the Anaerobic Degradation of n-Hexane by Denitrifying Betaproteobacterium Strain HxN1.

Küppers J, Mitschke N, Heyen S, Rabus R, Wilkes H, Christoffers J.

Chembiochem. 2020 Feb 3;21(3):373-380. doi: 10.1002/cbic.201900375. Epub 2019 Oct 30.

6.

Stereochemical Insights into the Anaerobic Degradation of 4-Isopropylbenzoyl-CoA in the Denitrifying Bacterium Strain pCyN1.

Küppers J, Becker P, Jarling R, Dörries M, Cakić N, Schmidtmann M, Christoffers J, Rabus R, Wilkes H.

Chemistry. 2019 Mar 27;25(18):4722-4731. doi: 10.1002/chem.201805837. Epub 2019 Mar 1.

PMID:
30601577
7.

What's the Difference? 2D DIGE Image Analysis by DeCyderTM versus SameSpotsTM.

Schnaars V, Dörries M, Hutchins M, Wöhlbrand L, Rabus R.

J Mol Microbiol Biotechnol. 2018;28(3):128-136. doi: 10.1159/000494083. Epub 2018 Nov 14.

8.

Applications of Difference Gel Electrophoresis (DIGE) in the Study of Microorganisms.

Trautwein K, Rabus R.

Methods Mol Biol. 2018;1841:95-112. doi: 10.1007/978-1-4939-8695-8_8.

PMID:
30259482
9.

Genetic repertoires of anaerobic microbiomes driving generation of biogas.

Grohmann A, Vainshtein Y, Euchner E, Grumaz C, Bryniok D, Rabus R, Sohn K.

Biotechnol Biofuels. 2018 Sep 20;11:255. doi: 10.1186/s13068-018-1258-x. eCollection 2018.

10.

Lectin-binding and dissociation/reconstitution studies on the trichocysts of the dinoflagellate Oxyrrhis marina.

Rhiel E, Wöhlbrand L, Rabus R.

Protoplasma. 2019 Mar;256(2):459-469. doi: 10.1007/s00709-018-1308-z. Epub 2018 Sep 17.

PMID:
30225813
11.

The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks.

Trautwein K, Hensler M, Wiegmann K, Skorubskaya E, Wöhlbrand L, Wünsch D, Hinrichs C, Feenders C, Müller C, Schell K, Ruppersberg H, Vagts J, Koßmehl S, Steinbüchel A, Schmidt-Kopplin P, Wilkes H, Hillebrand H, Blasius B, Schomburg D, Rabus R.

FEMS Microbiol Ecol. 2018 Oct 1;94(10). doi: 10.1093/femsec/fiy154.

12.

Towards the Response Threshold for p-Hydroxyacetophenone in the Denitrifying Bacterium "Aromatoleum aromaticum" EbN1.

Vagts J, Scheve S, Kant M, Wöhlbrand L, Rabus R.

Appl Environ Microbiol. 2018 Aug 31;84(18). pii: e01018-18. doi: 10.1128/AEM.01018-18. Print 2018 Sep 15.

13.

Impact of Extraction Methods on the Detectable Protein Complement of Metaproteomic Analyses of Marine Sediments.

Wöhlbrand L, Feenders C, Nachbaur J, Freund H, Engelen B, Wilkes H, Brumsack HJ, Rabus R.

Proteomics. 2017 Nov;17(22). doi: 10.1002/pmic.201700241.

PMID:
29027362
14.

Correction to: More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis.

Michas A, Vestergaard G, Trautwein K, Avramidis P, Hatzinikolaou DG, Vorgias CE, Wilkes H, Rabus R, Schloter M, Schöler A.

Microbiome. 2017 Oct 11;5(1):136. doi: 10.1186/s40168-017-0354-7. No abstract available.

15.

More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis.

Michas A, Vestergaard G, Trautwein K, Avramidis P, Hatzinikolaou DG, Vorgias CE, Wilkes H, Rabus R, Schloter M, Schöler A.

Microbiome. 2017 Sep 11;5(1):118. doi: 10.1186/s40168-017-0337-8. Erratum in: Microbiome. 2017 Oct 11;5(1):136.

16.

Influence of NanoLC Column and Gradient Length as well as MS/MS Frequency and Sample Complexity on Shotgun Protein Identification of Marine Bacteria.

Wöhlbrand L, Rabus R, Blasius B, Feenders C.

J Mol Microbiol Biotechnol. 2017;27(3):199-212. doi: 10.1159/000478907. Epub 2017 Aug 30.

17.

Erratum to: Candidates of trichocyst matrix proteins of the dinoflagellate Oxyrrhis marina.

Rhiel E, Wöhlbrand L, Rabus R, Voget S.

Protoplasma. 2018 Jan;255(1):231-234. doi: 10.1007/s00709-017-1152-6. No abstract available.

PMID:
28825146
18.

Candidates of trichocyst matrix proteins of the dinoflagellate Oxyrrhis marina.

Rhiel E, Wöhlbrand L, Rabus R, Voget S.

Protoplasma. 2018 Jan;255(1):217-230. doi: 10.1007/s00709-017-1148-2. Epub 2017 Aug 4. Erratum in: Protoplasma. 2017 Aug 21;:.

PMID:
28779305
19.

Non-Redfield, nutrient synergy and flexible internal elemental stoichiometry in a marine bacterium.

Trautwein K, Feenders C, Hulsch R, Ruppersberg HS, Strijkstra A, Kant M, Vagts J, Wünsch D, Michalke B, Maczka M, Schulz S, Hillebrand H, Blasius B, Rabus R.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix059.

20.

Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea.

Wöhlbrand L, Wemheuer B, Feenders C, Ruppersberg HS, Hinrichs C, Blasius B, Daniel R, Rabus R.

Front Microbiol. 2017 Mar 24;8:442. doi: 10.3389/fmicb.2017.00442. eCollection 2017.

21.

Photometric Determination of Ammonium and Phosphate in Seawater Medium Using a Microplate Reader.

Ruppersberg HS, Goebel MR, Kleinert SI, Wünsch D, Trautwein K, Rabus R.

J Mol Microbiol Biotechnol. 2017;27(2):73-80. doi: 10.1159/000454814. Epub 2017 Feb 8.

PMID:
28171869
22.
23.

Differential proteomic analysis of the metabolic network of the marine sulfate-reducer Desulfobacterium autotrophicum HRM2.

Dörries M, Wöhlbrand L, Rabus R.

Proteomics. 2016 Nov;16(22):2878-2893. doi: 10.1002/pmic.201600041.

PMID:
27701823
24.

High performance CCD camera system for digitalisation of 2D DIGE gels.

Strijkstra A, Trautwein K, Roesler S, Feenders C, Danzer D, Riemenschneider U, Blasius B, Rabus R.

Proteomics. 2016 Jul;16(14):1975-9. doi: 10.1002/pmic.201500385.

25.

Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses.

Trautwein K, Will SE, Hulsch R, Maschmann U, Wiegmann K, Hensler M, Michael V, Ruppersberg H, Wünsch D, Feenders C, Neumann-Schaal M, Kaltenhäuser S, Ulbrich M, Schmidt-Hohagen K, Blasius B, Petersen J, Schomburg D, Rabus R.

Environ Microbiol. 2016 Dec;18(12):4817-4829. doi: 10.1111/1462-2920.13381. Epub 2016 Jul 24.

PMID:
27233797
26.

Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment.

Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H.

J Mol Microbiol Biotechnol. 2016;26(1-3):5-28. doi: 10.1159/000443997. Epub 2016 Mar 10. Review.

27.

Anaerobic Degradation of p-Alkylated Benzoates and Toluenes.

Rabus R, Boll M, Golding B, Wilkes H.

J Mol Microbiol Biotechnol. 2016;26(1-3):63-75. doi: 10.1159/000441144. Epub 2016 Mar 10. Review.

PMID:
26960059
28.

Metabolism of Hydrocarbons in n-Alkane-Utilizing Anaerobic Bacteria.

Wilkes H, Buckel W, Golding BT, Rabus R.

J Mol Microbiol Biotechnol. 2016;26(1-3):138-51. doi: 10.1159/000442160. Epub 2016 Mar 10. Review.

PMID:
26959725
29.

Localisation of the Putative Magnetoreceptive Protein Cryptochrome 1b in the Retinae of Migratory Birds and Homing Pigeons.

Bolte P, Bleibaum F, Einwich A, Günther A, Liedvogel M, Heyers D, Depping A, Wöhlbrand L, Rabus R, Janssen-Bienhold U, Mouritsen H.

PLoS One. 2016 Mar 8;11(3):e0147819. doi: 10.1371/journal.pone.0147819. eCollection 2016.

30.

Analysis of membrane-protein complexes of the marine sulfate reducer Desulfobacula toluolica Tol2 by 1D blue native-PAGE complexome profiling and 2D blue native-/SDS-PAGE.

Wöhlbrand L, Ruppersberg HS, Feenders C, Blasius B, Braun HP, Rabus R.

Proteomics. 2016 Mar;16(6):973-88. doi: 10.1002/pmic.201500360.

PMID:
26792001
31.
32.

Molecular Genetic and Crystal Structural Analysis of 1-(4-Hydroxyphenyl)-Ethanol Dehydrogenase from 'Aromatoleum aromaticum' EbN1.

Büsing I, Höffken HW, Breuer M, Wöhlbrand L, Hauer B, Rabus R.

J Mol Microbiol Biotechnol. 2015;25(5):327-39. doi: 10.1159/000439113. Epub 2015 Oct 22.

33.

Versatile transformations of hydrocarbons in anaerobic bacteria: substrate ranges and regio- and stereo-chemistry of activation reactions.

Jarling R, Kühner S, Basílio Janke E, Gruner A, Drozdowska M, Golding BT, Rabus R, Wilkes H.

Front Microbiol. 2015 Sep 7;6:880. doi: 10.3389/fmicb.2015.00880. eCollection 2015.

34.

A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes.

Rabus R, Venceslau SS, Wöhlbrand L, Voordouw G, Wall JD, Pereira IA.

Adv Microb Physiol. 2015;66:55-321. doi: 10.1016/bs.ampbs.2015.05.002. Epub 2015 Jul 9. Review.

PMID:
26210106
35.

Benzoate mediates the simultaneous repression of anaerobic 4-methylbenzoate and succinate utilization in Magnetospirillum sp. strain pMbN1.

Lahme S, Trautwein K, Strijkstra A, Dörries M, Wöhlbrand L, Rabus R.

BMC Microbiol. 2014 Oct 27;14:269. doi: 10.1186/s12866-014-0269-4.

36.

Anaerobic activation of p-cymene in denitrifying betaproteobacteria: methyl group hydroxylation versus addition to fumarate.

Strijkstra A, Trautwein K, Jarling R, Wöhlbrand L, Dörries M, Reinhardt R, Drozdowska M, Golding BT, Wilkes H, Rabus R.

Appl Environ Microbiol. 2014 Dec;80(24):7592-603. doi: 10.1128/AEM.02385-14. Epub 2014 Sep 26.

37.

Fifteen years of physiological proteo(geno)mics with (marine) environmental bacteria.

Rabus R.

Arch Physiol Biochem. 2014 Dec;120(5):173-87. doi: 10.3109/13813455.2014.951658. Epub 2014 Sep 18. Review.

PMID:
25233489
38.

Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.

Wiegmann K, Hensler M, Wöhlbrand L, Ulbrich M, Schomburg D, Rabus R.

Appl Environ Microbiol. 2014 Aug;80(15):4725-37.

39.

Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion.

Laass S, Kleist S, Bill N, Drüppel K, Kossmehl S, Wöhlbrand L, Rabus R, Klein J, Rohde M, Bartsch A, Wittmann C, Schmidt-Hohagen K, Tielen P, Jahn D, Schomburg D.

J Biol Chem. 2014 May 9;289(19):13219-31. doi: 10.1074/jbc.M113.545004. Epub 2014 Mar 19.

40.

Towards habitat-oriented systems biology of "Aromatoleum aromaticum" EbN1: chemical sensing, catabolic network modulation and growth control in anaerobic aromatic compound degradation.

Rabus R, Trautwein K, Wöhlbrand L.

Appl Microbiol Biotechnol. 2014 Apr;98(8):3371-88. doi: 10.1007/s00253-013-5466-9. Epub 2014 Feb 4. Review.

PMID:
24493567
41.

Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).

Drüppel K, Hensler M, Trautwein K, Koßmehl S, Wöhlbrand L, Schmidt-Hohagen K, Ulbrich M, Bergen N, Meier-Kolthoff JP, Göker M, Klenk HP, Schomburg D, Rabus R.

Environ Microbiol. 2014 Jan;16(1):218-38. doi: 10.1111/1462-2920.12276. Epub 2013 Oct 27.

PMID:
24165547
42.

Analysis of the complete genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and their comparison to the obligate parasites from 'Candidatus Phytoplasma'.

Kube M, Siewert C, Migdoll AM, Duduk B, Holz S, Rabus R, Seemüller E, Mitrovic J, Müller I, Büttner C, Reinhardt R.

J Mol Microbiol Biotechnol. 2014;24(1):19-36. doi: 10.1159/000354322. Epub 2013 Oct 18.

43.

Environmental microbial proteomics: new avenues for a molecular understanding of the functional role of microorganisms in the natural environment.

Rabus R.

Proteomics. 2013 Oct;13(18-19):2697-9. doi: 10.1002/pmic.201370154. No abstract available.

PMID:
24092649
44.

Transposon mutagenesis identified chromosomal and plasmid genes essential for adaptation of the marine bacterium Dinoroseobacter shibae to anaerobic conditions.

Ebert M, Laaß S, Burghartz M, Petersen J, Koßmehl S, Wöhlbrand L, Rabus R, Wittmann C, Tielen P, Jahn D.

J Bacteriol. 2013 Oct;195(20):4769-77. doi: 10.1128/JB.00860-13. Epub 2013 Aug 23.

45.

Subcellular protein localization (cell envelope) in Phaeobacter inhibens DSM 17395.

Koßmehl S, Wöhlbrand L, Drüppel K, Feenders C, Blasius B, Rabus R.

Proteomics. 2013 Oct;13(18-19):2743-60. doi: 10.1002/pmic.201300112.

PMID:
23907795
46.

Proteomic tools for environmental microbiology--a roadmap from sample preparation to protein identification and quantification.

Wöhlbrand L, Trautwein K, Rabus R.

Proteomics. 2013 Oct;13(18-19):2700-30. doi: 10.1002/pmic.201300175. Review.

PMID:
23894077
47.

Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395.

Zech H, Hensler M, Koßmehl S, Drüppel K, Wöhlbrand L, Trautwein K, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R.

Proteomics. 2013 Oct;13(18-19):2869-85. doi: 10.1002/pmic.201200560. Epub 2013 Jul 11.

PMID:
23625753
48.

Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients.

Zech H, Hensler M, Koßmehl S, Drüppel K, Wöhlbrand L, Trautwein K, Hulsch R, Maschmann U, Colby T, Schmidt J, Reinhardt R, Schmidt-Hohagen K, Schomburg D, Rabus R.

Proteomics. 2013 Oct;13(18-19):2851-68. doi: 10.1002/pmic.201200513. Epub 2013 Jul 5.

PMID:
23613352
49.

Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium.

Wöhlbrand L, Jacob JH, Kube M, Mussmann M, Jarling R, Beck A, Amann R, Wilkes H, Reinhardt R, Rabus R.

Environ Microbiol. 2013 May;15(5):1334-55. doi: 10.1111/j.1462-2920.2012.02885.x. Epub 2012 Oct 23.

PMID:
23088741
50.

Computing posterior probabilities for score-based alignments using ppALIGN.

Wolfsheimer S, Hartmann A, Rabus R, Nuel G.

Stat Appl Genet Mol Biol. 2012 May 16;11(4):Article 1. doi: 10.1515/1544-6115.1702.

PMID:
22628350

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