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Items: 21

1.

Predicting the location of the non-local contacts in α-synuclein.

Bergasa-Caceres F, Rabitz HA.

Biochim Biophys Acta Proteins Proteom. 2018 Sep 29;1866(12):1201-1208. doi: 10.1016/j.bbapap.2018.09.006. [Epub ahead of print]

PMID:
30278287
2.

Shaped incoherent light for control of kinetics: Optimization of up-conversion hues in phosphors.

Laforge FO, Kirschner MS, Rabitz HA.

J Chem Phys. 2018 Aug 7;149(5):054201. doi: 10.1063/1.5035077.

PMID:
30089377
3.

Correction to "Wigner-Lindblad Equations for Quantum Friction".

Bondar DI, Cabrera R, Campos A, Mukamel S, Rabitz HA.

J Phys Chem Lett. 2018 Jun 21;9(12):3503. doi: 10.1021/acs.jpclett.8b01793. Epub 2018 Jun 13. No abstract available.

PMID:
29897760
4.

Erratum: Analytic Solutions to Coherent Control of the Dirac Equation [Phys. Rev. Lett. 119, 173203 (2017)].

Campos AG, Cabrera R, Rabitz HA, Bondar DI.

Phys Rev Lett. 2017 Dec 22;119(25):259903. doi: 10.1103/PhysRevLett.119.259903. Epub 2017 Dec 22.

PMID:
29303332
5.

Analytic Solutions to Coherent Control of the Dirac Equation.

Campos AG, Cabrera R, Rabitz HA, Bondar DI.

Phys Rev Lett. 2017 Oct 27;119(17):173203. doi: 10.1103/PhysRevLett.119.173203. Epub 2017 Oct 27. Erratum in: Phys Rev Lett. 2017 Dec 22;119(25):259903.

PMID:
29219449
6.

How to Make Distinct Dynamical Systems Appear Spectrally Identical.

Campos AG, Bondar DI, Cabrera R, Rabitz HA.

Phys Rev Lett. 2017 Feb 24;118(8):083201. doi: 10.1103/PhysRevLett.118.083201. Epub 2017 Feb 24.

PMID:
28282186
7.

Macromolecular Crowding Facilitates the Conformational Transition of on-Pathway Molten Globule States of the Prion Protein.

Bergasa-Caceres F, Rabitz HA.

J Phys Chem B. 2016 Nov 3;120(43):11093-11101. Epub 2016 Oct 25.

PMID:
27736090
8.

Efficient computations of quantum canonical Gibbs state in phase space.

Bondar DI, Campos AG, Cabrera R, Rabitz HA.

Phys Rev E. 2016 Jun;93(6):063304. doi: 10.1103/PhysRevE.93.063304. Epub 2016 Jun 13.

PMID:
27415384
9.

Photonic reagents for concentration measurement of flu-orescent proteins with overlapping spectra.

Goun A, Bondar DI, Er AO, Quine Z, Rabitz HA.

Sci Rep. 2016 May 16;6:25827. doi: 10.1038/srep25827.

10.

Wigner-Lindblad Equations for Quantum Friction.

Bondar DI, Cabrera R, Campos A, Mukamel S, Rabitz HA.

J Phys Chem Lett. 2016 May 5;7(9):1632-7. doi: 10.1021/acs.jpclett.6b00498. Epub 2016 Apr 19. Erratum in: J Phys Chem Lett. 2018 Jun 21;9(12):3503.

11.

Operational dynamic modeling transcending quantum and classical mechanics.

Bondar DI, Cabrera R, Lompay RR, Ivanov MY, Rabitz HA.

Phys Rev Lett. 2012 Nov 9;109(19):190403. Epub 2012 Nov 8.

PMID:
23215365
12.

Identifying biological network structure, predicting network behavior, and classifying network state with High Dimensional Model Representation (HDMR).

Miller MA, Feng XJ, Li G, Rabitz HA.

PLoS One. 2012;7(6):e37664. doi: 10.1371/journal.pone.0037664. Epub 2012 Jun 18.

13.

Quiescent fibroblasts exhibit high metabolic activity.

Lemons JM, Feng XJ, Bennett BD, Legesse-Miller A, Johnson EL, Raitman I, Pollina EA, Rabitz HA, Rabinowitz JD, Coller HA.

PLoS Biol. 2010 Oct 19;8(10):e1000514. doi: 10.1371/journal.pbio.1000514.

14.

Low entropic barrier to the hydrophobic collapse of the prion protein: effects of intermediate states and conformational flexibility.

Bergasa-Caceres F, Rabitz HA.

J Phys Chem A. 2010 Jul 8;114(26):6978-82. doi: 10.1021/jp909944p.

PMID:
20540513
15.

Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli.

Yuan J, Doucette CD, Fowler WU, Feng XJ, Piazza M, Rabitz HA, Wingreen NS, Rabinowitz JD.

Mol Syst Biol. 2009;5:302. doi: 10.1038/msb.2009.60. Epub 2009 Aug 18.

16.

Toward adaptive control of coherent electron transport in semiconductors.

Solas F, Ashton JM, Markmann A, Rabitz HA.

J Chem Phys. 2009 Jun 7;130(21):214702. doi: 10.1063/1.3132782.

PMID:
19508082
17.

Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies.

DiMaggio PA Jr, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA.

BMC Bioinformatics. 2008 Oct 27;9:458. doi: 10.1186/1471-2105-9-458.

18.

Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy.

Munger J, Bennett BD, Parikh A, Feng XJ, McArdle J, Rabitz HA, Shenk T, Rabinowitz JD.

Nat Biotechnol. 2008 Oct;26(10):1179-86. doi: 10.1038/nbt.1500. Epub 2008 Sep 28.

19.

Quantum optimally controlled transition landscapes.

Rabitz HA, Hsieh MM, Rosenthal CM.

Science. 2004 Mar 26;303(5666):1998-2001.

20.

Simulating bioremediation of uranium-contaminated aquifers; uncertainty assessment of model parameters.

Wang S, Jaffé PR, Li G, Wang SW, Rabitz HA.

J Contam Hydrol. 2003 Jul;64(3-4):283-307.

PMID:
12814885
21.

Application of the Born-Oppenheimer principle to classification of time scales in molecules interacting with time-dependent external fields.

Gil TJ, Shi S, Askar A, Rabitz HA.

Phys Rev A. 1992 May 1;45(9):6479-6492. No abstract available.

PMID:
9907771

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