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Toxicological impact of acute exposure to E171 food additive and TiO2 nanoparticles on a co-culture of Caco-2 and HT29-MTX intestinal cells.

Dorier M, Tisseyre C, Dussert F, Béal D, Arnal ME, Douki T, Valdiglesias V, Laffon B, Fraga S, Brandão F, Herlin-Boime N, Barreau F, Rabilloud T, Carriere M.

Mutat Res. 2019 Sep;845:402980. doi: 10.1016/j.mrgentox.2018.11.004. Epub 2018 Nov 22.


A Proteomic View of Cellular Responses to Anticancer Quinoline-Copper Complexes.

Dalzon B, Bons J, Diemer H, Collin-Faure V, Marie-Desvergne C, Dubosson M, Cianferani S, Carapito C, Rabilloud T.

Proteomes. 2019 Jun 24;7(2). pii: E26. doi: 10.3390/proteomes7020026.


A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level.

Bons J, Macron C, Aude-Garcia C, Vaca-Jacome SA, Rompais M, Cianférani S, Carapito C, Rabilloud T.

Mol Cell Proteomics. 2019 Jun;18(6):1085-1095. doi: 10.1074/mcp.RA118.001269. Epub 2019 Mar 15.


Utility of macrophages in an antitumor strategy based on the vectorization of iron oxide nanoparticles.

Dalzon B, Guidetti M, Testemale D, Reymond S, Proux O, Vollaire J, Collin-Faure V, Testard I, Fenel D, Schoehn G, Arnaud J, Carrière M, Josserand V, Rabilloud T, Aude-Garcia C.

Nanoscale. 2019 May 16;11(19):9341-9352. doi: 10.1039/c8nr03364a.


A quantitative proteomic analysis of cofilin phosphorylation in myeloid cells and its modulation using the LIM kinase inhibitor Pyr1.

Prudent R, Demoncheaux N, Diemer H, Collin-Faure V, Kapur R, Paublant F, Lafanechère L, Cianférani S, Rabilloud T.

PLoS One. 2018 Dec 14;13(12):e0208979. doi: 10.1371/journal.pone.0208979. eCollection 2018.


The Cydex Blue Assay: A One-Step Protein Assay for Samples Prior to SDS Electrophoresis.

Rabilloud T.

Methods Mol Biol. 2019;1855:73-80. doi: 10.1007/978-1-4939-8793-1_6.


Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics.

Muller L, Fornecker L, Chion M, Van Dorsselaer A, Cianférani S, Rabilloud T, Carapito C.

Sci Rep. 2018 May 29;8(1):8260. doi: 10.1038/s41598-018-26600-4.


The poly-gamma-glutamate of Bacillus subtilis interacts specifically with silver nanoparticles.

Eymard-Vernain E, Coute Y, Adrait A, Rabilloud T, Sarret G, Lelong C.

PLoS One. 2018 May 29;13(5):e0197501. doi: 10.1371/journal.pone.0197501. eCollection 2018.


Author Correction: Impact of nanoparticles on the Bacillus subtilis (3610) competence.

Eymard-Vernain E, Luche S, Rabilloud T, Lelong C.

Sci Rep. 2018 Apr 19;8(1):6486. doi: 10.1038/s41598-018-24841-x.


Optimization of the cydex blue assay: A one-step colorimetric protein assay using cyclodextrins and compatible with detergents and reducers.

Rabilloud T.

PLoS One. 2018 Apr 11;13(4):e0195755. doi: 10.1371/journal.pone.0195755. eCollection 2018.


Impact of nanoparticles on the Bacillus subtilis (3610) competence.

Eymard-Vernain E, Luche S, Rabilloud T, Lelong C.

Sci Rep. 2018 Feb 14;8(1):2978. doi: 10.1038/s41598-018-21402-0. Erratum in: Sci Rep. 2018 Apr 19;8(1):6486.


Differential proteomics highlights macrophage-specific responses to amorphous silica nanoparticles.

Dalzon B, Aude-Garcia C, Collin-Faure V, Diemer H, Béal D, Dussert F, Fenel D, Schoehn G, Cianférani S, Carrière M, Rabilloud T.

Nanoscale. 2017 Jul 13;9(27):9641-9658. doi: 10.1039/c7nr02140b.


Two proteomic methodologies for defining N-termini of mature human mitochondrial aminoacyl-tRNA synthetases.

Carapito C, Kuhn L, Karim L, Rompais M, Rabilloud T, Schwenzer H, Sissler M.

Methods. 2017 Jan 15;113:111-119. doi: 10.1016/j.ymeth.2016.10.012. Epub 2016 Oct 26.


Culture medium associated changes in the core proteome of macrophages and in their responses to copper oxide nanoparticles.

Dalzon B, Diemer H, Collin-Faure V, Cianférani S, Rabilloud T, Aude-Garcia C.

Proteomics. 2016 Nov;16(22):2864-2877. doi: 10.1002/pmic.201600052.


A single step protein assay that is both detergent and reducer compatible: The cydex blue assay.

Rabilloud T.

Electrophoresis. 2016 Oct;37(20):2595-2601. doi: 10.1002/elps.201600270. Epub 2016 Sep 12.


A combined proteomic and targeted analysis unravels new toxic mechanisms for zinc oxide nanoparticles in macrophages.

Aude-Garcia C, Dalzon B, Ravanat JL, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Carrière M, Rabilloud T.

J Proteomics. 2016 Feb 16;134:174-185. doi: 10.1016/j.jprot.2015.12.013. Epub 2015 Dec 19.


Different in vitro exposure regimens of murine primary macrophages to silver nanoparticles induce different fates of nanoparticles and different toxicological and functional consequences.

Aude-Garcia C, Villiers F, Collin-Faure V, Pernet-Gallay K, Jouneau PH, Sorieul S, Mure G, Gerdil A, Herlin-Boime N, Carrière M, Rabilloud T.

Nanotoxicology. 2016;10(5):586-96. doi: 10.3109/17435390.2015.1104738. Epub 2015 Nov 10.


Molecular responses of alveolar epithelial A549 cells to chronic exposure to titanium dioxide nanoparticles: A proteomic view.

Armand L, Biola-Clier M, Bobyk L, Collin-Faure V, Diemer H, Strub JM, Cianferani S, Van Dorsselaer A, Herlin-Boime N, Rabilloud T, Carriere M.

J Proteomics. 2016 Feb 16;134:163-173. doi: 10.1016/j.jprot.2015.08.006. Epub 2015 Aug 11.


Zinc oxide induces the stringent response and major reorientations in the central metabolism of Bacillus subtilis.

Luche S, Eymard-Vernain E, Diemer H, Van Dorsselaer A, Rabilloud T, Lelong C.

J Proteomics. 2016 Mar 1;135:170-180. doi: 10.1016/j.jprot.2015.07.018. Epub 2015 Jul 26.


N-terminome analysis of the human mitochondrial proteome.

Vaca Jacome AS, Rabilloud T, Schaeffer-Reiss C, Rompais M, Ayoub D, Lane L, Bairoch A, Van Dorsselaer A, Carapito C.

Proteomics. 2015 Jul;15(14):2519-24. doi: 10.1002/pmic.201400617. Epub 2015 Jun 8.


Comparative proteomic analysis of the molecular responses of mouse macrophages to titanium dioxide and copper oxide nanoparticles unravels some toxic mechanisms for copper oxide nanoparticles in macrophages.

Triboulet S, Aude-Garcia C, Armand L, Collin-Faure V, Chevallet M, Diemer H, Gerdil A, Proamer F, Strub JM, Habert A, Herlin N, Van Dorsselaer A, Carrière M, Rabilloud T.

PLoS One. 2015 Apr 22;10(4):e0124496. doi: 10.1371/journal.pone.0124496. eCollection 2015.


Preparing protein extracts for quantitative two-dimensional gel comparison.

Lelong C, Rabilloud T.

Curr Protoc Protein Sci. 2015 Apr 1;80:22.4.1-22.4.12. doi: 10.1002/0471140864.ps2204s80.


Impact of anatase and rutile titanium dioxide nanoparticles on uptake carriers and efflux pumps in Caco-2 gut epithelial cells.

Dorier M, Brun E, Veronesi G, Barreau F, Pernet-Gallay K, Desvergne C, Rabilloud T, Carapito C, Herlin-Boime N, Carrière M.

Nanoscale. 2015 Apr 28;7(16):7352-60. doi: 10.1039/c5nr00505a.


Exposure-dependent Ag+ release from silver nanoparticles and its complexation in AgS2 sites in primary murine macrophages.

Veronesi G, Aude-Garcia C, Kieffer I, Gallon T, Delangle P, Herlin-Boime N, Rabilloud T, Carrière M.

Nanoscale. 2015 Apr 28;7(16):7323-30. doi: 10.1039/c5nr00353a.


Proteomics in mechanistic toxicology: history, concepts, achievements, caveats, and potential.

Rabilloud T, Lescuyer P.

Proteomics. 2015 Mar;15(5-6):1051-74. doi: 10.1002/pmic.201400288. Epub 2014 Oct 18. Review.


Analysis of cellular responses of macrophages to zinc ions and zinc oxide nanoparticles: a combined targeted and proteomic approach.

Triboulet S, Aude-Garcia C, Armand L, Gerdil A, Diemer H, Proamer F, Collin-Faure V, Habert A, Strub JM, Hanau D, Herlin N, Carrière M, Van Dorsselaer A, Rabilloud T.

Nanoscale. 2014 Jun 7;6(11):6102-14. doi: 10.1039/c4nr00319e. Epub 2014 May 1.


Functional consequences of the over-expression of TRPC6 channels in HEK cells: impact on the homeostasis of zinc.

Chevallet M, Jarvis L, Harel A, Luche S, Degot S, Chapuis V, Boulay G, Rabilloud T, Bouron A.

Metallomics. 2014 Jul;6(7):1269-76. doi: 10.1039/c4mt00028e.


Titanium dioxide nanoparticle impact and translocation through ex vivo, in vivo and in vitro gut epithelia.

Brun E, Barreau F, Veronesi G, Fayard B, Sorieul S, Chanéac C, Carapito C, Rabilloud T, Mabondzo A, Herlin-Boime N, Carrière M.

Part Fibre Toxicol. 2014 Mar 25;11:13. doi: 10.1186/1743-8977-11-13.


The proteomic to biology inference, a frequently overlooked concern in the interpretation of proteomic data: a plea for functional validation.

Rabilloud T, Lescuyer P.

Proteomics. 2014 Feb;14(2-3):157-61. doi: 10.1002/pmic.201300413. Epub 2014 Jan 6.


How to use 2D gel electrophoresis in plant proteomics.

Rabilloud T.

Methods Mol Biol. 2014;1072:43-50. doi: 10.1007/978-1-62703-631-3_4.


Multidimensional separation prior to mass spectrometry: getting closer to the bottom of the iceberg.

Mayr M, Rabilloud T.

Proteomics. 2013 Oct;13(20):2942-3. doi: 10.1002/pmic.201300400.


Molecular responses of mouse macrophages to copper and copper oxide nanoparticles inferred from proteomic analyses.

Triboulet S, Aude-Garcia C, Carrière M, Diemer H, Proamer F, Habert A, Chevallet M, Collin-Faure V, Strub JM, Hanau D, Van Dorsselaer A, Herlin-Boime N, Rabilloud T.

Mol Cell Proteomics. 2013 Nov;12(11):3108-22. doi: 10.1074/mcp.M113.030742. Epub 2013 Jul 23.


When 2D is not enough, go for an extra dimension.

Rabilloud T.

Proteomics. 2013 Jul;13(14):2065-8. doi: 10.1002/pmic.201300215.


Two-dimensional SDS-PAGE fractionation of biological samples for biomarker discovery.

Rabilloud T, Triboulet S.

Methods Mol Biol. 2013;1002:151-65. doi: 10.1007/978-1-62703-360-2_13.


Update on the proteomics of major arthropod vectors of human and animal pathogens.

Patramool S, Choumet V, Surasombatpattana P, Sabatier L, Thomas F, Thongrungkiat S, Rabilloud T, Boulanger N, Biron DG, Missé D.

Proteomics. 2012 Dec;12(23-24):3510-23. doi: 10.1002/pmic.201200300. Epub 2012 Nov 12. Review.


Improved proteomic analysis of nuclear proteins, as exemplified by the comparison of two myeloid cell lines nuclear proteomes.

Lelong C, Chevallet M, Diemer H, Luche S, Van Dorsselaer A, Rabilloud T.

J Proteomics. 2012 Dec 21;77:577-602. doi: 10.1016/j.jprot.2012.09.034. Epub 2012 Oct 10.


Silver staining of 2D electrophoresis gels.

Rabilloud T.

Methods Mol Biol. 2012;893:61-73. doi: 10.1007/978-1-61779-885-6_5.


The whereabouts of 2D gels in quantitative proteomics.

Rabilloud T.

Methods Mol Biol. 2012;893:25-35. doi: 10.1007/978-1-61779-885-6_2.


The transition of the European Proteomics Association into the future.

Corthals GL, Dunn M, James P, Gil C, Penque D, Albar JP, Andrén P, Rabilloud T, Marko-Varga G.

J Proteomics. 2011 Dec 10;75(1):18-22. doi: 10.1016/j.jprot.2011.06.018. Epub 2011 Jun 28.


Two-dimensional gel electrophoresis in proteomics: a tutorial.

Rabilloud T, Lelong C.

J Proteomics. 2011 Sep 6;74(10):1829-41. doi: 10.1016/j.jprot.2011.05.040. Epub 2011 Jun 12.


Improvements and simplifications in in-gel fluorescent detection of proteins using ruthenium II tris-(bathophenanthroline disulfonate): the poor man's fluorescent detection method.

Aude-Garcia C, Collin-Faure V, Luche S, Rabilloud T.

Proteomics. 2011 Jan;11(2):324-8. doi: 10.1002/pmic.201000370. Epub 2010 Dec 14.


Two-dimensional gel electrophoresis in proteomics: Past, present and future.

Rabilloud T, Chevallet M, Luche S, Lelong C.

J Proteomics. 2010 Oct 10;73(11):2064-77. doi: 10.1016/j.jprot.2010.05.016. Epub 2010 Jun 1. Review.


Is a gene-centric human proteome project the best way for proteomics to serve biology?

Rabilloud T, Hochstrasser D, Simpson RJ.

Proteomics. 2010 Sep;10(17):3067-72. doi: 10.1002/pmic.201000220.


Dual roles for MEF2A and MEF2D during human macrophage terminal differentiation and c-Jun expression.

Aude-Garcia C, Collin-Faure V, Bausinger H, Hanau D, Rabilloud T, Lemercier C.

Biochem J. 2010 Sep 1;430(2):237-44. doi: 10.1042/BJ20100131.


Variations on a theme: changes to electrophoretic separations that can make a difference.

Rabilloud T.

J Proteomics. 2010 Jun 16;73(8):1562-72. doi: 10.1016/j.jprot.2010.04.001. Epub 2010 Apr 12. Review.


Membrane proteins and proteomics: love is possible, but so difficult.

Rabilloud T.

Electrophoresis. 2009 Jun;30 Suppl 1:S174-80. doi: 10.1002/elps.200900050. Review.


Silver staining of proteins in 2DE gels.

Lelong C, Chevallet M, Luche S, Rabilloud T.

Methods Mol Biol. 2009;519:339-50. doi: 10.1007/978-1-59745-281-6_21.


Solubilization of proteins in 2DE: an outline.

Rabilloud T.

Methods Mol Biol. 2009;519:19-30. doi: 10.1007/978-1-59745-281-6_2.


From secretome analysis to immunology: chitosan induces major alterations in the activation of dendritic cells via a TLR4-dependent mechanism.

Villiers C, Chevallet M, Diemer H, Couderc R, Freitas H, Van Dorsselaer A, Marche PN, Rabilloud T.

Mol Cell Proteomics. 2009 Jun;8(6):1252-64. doi: 10.1074/mcp.M800589-MCP200. Epub 2009 Mar 11.

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