Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 37

1.

AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees.

Cazaux B, Castel G, Rivals E.

Bioinformatics. 2019 Jan 14. doi: 10.1093/bioinformatics/btz011. [Epub ahead of print]

PMID:
30649190
2.

Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia.

Dwivedi A, Reynes C, Kuehn A, Roche DB, Khim N, Hebrard M, Milanesi S, Rivals E, Frutos R, Menard D, Mamoun CB, Colinge J, Cornillot E.

Malar J. 2017 Dec 19;16(1):493. doi: 10.1186/s12936-017-2140-1.

3.

The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.

Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM, Lanaud C.

BMC Genomics. 2017 Sep 15;18(1):730. doi: 10.1186/s12864-017-4120-9.

4.

Population genomics of picophytoplankton unveils novel chromosome hypervariability.

Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C, Desdevises Y, Sanchez-Ferandin S, Moreau H, Rivals E, Grigoriev IV, Grimsley N, Eyre-Walker A, Piganeau G.

Sci Adv. 2017 Jul 5;3(7):e1700239. doi: 10.1126/sciadv.1700239. eCollection 2017 Jul.

5.

De novo assembly of viral quasispecies using overlap graphs.

Baaijens JA, Aabidine AZE, Rivals E, Schönhuth A.

Genome Res. 2017 May;27(5):835-848. doi: 10.1101/gr.215038.116. Epub 2017 Apr 10.

6.

Ribo-seq enlightens codon usage bias.

Paulet D, David A, Rivals E.

DNA Res. 2017 Jun 1;24(3):303-210. doi: 10.1093/dnares/dsw062.

7.

Read mapping on de Bruijn graphs.

Limasset A, Cazaux B, Rivals E, Peterlongo P.

BMC Bioinformatics. 2016 Jun 16;17(1):237. doi: 10.1186/s12859-016-1103-9.

8.

Accurate self-correction of errors in long reads using de Bruijn graphs.

Salmela L, Walve R, Rivals E, Ukkonen E.

Bioinformatics. 2017 Mar 15;33(6):799-806. doi: 10.1093/bioinformatics/btw321.

9.

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

Le Bras Y, Collin O, Monjeaud C, Lacroix V, Rivals É, Lemaitre C, Miele V, Sacomoto G, Marchet C, Cazaux B, Zine El Aabidine A, Salmela L, Alves-Carvalho S, Andrieux A, Uricaru R, Peterlongo P.

Gigascience. 2016 Feb 11;5:9. doi: 10.1186/s13742-015-0105-2. eCollection 2016.

10.

YOC, A new strategy for pairwise alignment of collinear genomes.

Uricaru R, Michotey C, Chiapello H, Rivals E.

BMC Bioinformatics. 2015 Apr 2;16:111. doi: 10.1186/s12859-015-0530-3.

11.

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies.

Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carré I, Château A, Eyre-Walker A, Grimsley N, Moreau H, Piégu B, Rivals E, Schackwitz W, Van de Peer Y, Piganeau G.

BMC Genomics. 2014 Dec 13;15:1103. doi: 10.1186/1471-2164-15-1103.

12.

The ancient Yakuts: a population genetic enigma.

Keyser C, Hollard C, Gonzalez A, Fausser JL, Rivals E, Alexeev AN, Riberon A, Crubézy E, Ludes B.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130385. doi: 10.1098/rstb.2013.0385.

13.

LoRDEC: accurate and efficient long read error correction.

Salmela L, Rivals E.

Bioinformatics. 2014 Dec 15;30(24):3506-14. doi: 10.1093/bioinformatics/btu538. Epub 2014 Aug 26.

14.

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite.

Buard J, Rivals E, Dunoyer de Segonzac D, Garres C, Caminade P, de Massy B, Boursot P.

PLoS One. 2014 Jan 13;9(1):e85021. doi: 10.1371/journal.pone.0085021. eCollection 2014.

15.

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.

Philippe N, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T.

Nucleic Acids Res. 2014 Mar;42(5):2820-32. doi: 10.1093/nar/gkt1300. Epub 2013 Dec 18.

16.

CRAC: an integrated approach to the analysis of RNA-seq reads.

Philippe N, Salson M, Commes T, Rivals E.

Genome Biol. 2013 Mar 28;14(3):R30. doi: 10.1186/gb-2013-14-3-r30.

17.

Novel definition and algorithm for chaining fragments with proportional overlaps.

Uricaru R, Mancheron A, Rivals E.

J Comput Biol. 2011 Sep;18(9):1141-54. doi: 10.1089/cmb.2011.0126.

PMID:
21899421
18.

Evolutionary process of a tetranucleotide microsatellite locus in Acipenseriformes.

Shao ZJ, Rivals E, Zhao N, Lek S, Chang J, Berrebi P.

J Genet. 2011 Aug;90(2):217-27.

19.

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.

Cayrou C, Coulombe P, Vigneron A, Stanojcic S, Ganier O, Peiffer I, Rivals E, Puy A, Laurent-Chabalier S, Desprat R, Méchali M.

Genome Res. 2011 Sep;21(9):1438-49. doi: 10.1101/gr.121830.111. Epub 2011 Jul 12.

20.

Querying large read collections in main memory: a versatile data structure.

Philippe N, Salson M, Lecroq T, Léonard M, Commes T, Rivals E.

BMC Bioinformatics. 2011 Jun 17;12:242. doi: 10.1186/1471-2105-12-242.

21.

An alternative approach to multiple genome comparison.

Mancheron A, Uricaru R, Rivals E.

Nucleic Acids Res. 2011 Aug;39(15):e101. doi: 10.1093/nar/gkr177. Epub 2011 Jun 6.

22.

DNA slippage occurs at microsatellite loci without minimal threshold length in humans: a comparative genomic approach.

Leclercq S, Rivals E, Jarne P.

Genome Biol Evol. 2010 Jul 12;2:325-35. doi: 10.1093/gbe/evq023.

23.

Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo).

Hernandez Mora JR, Rivals E, Mireau H, Budar F.

BMC Plant Biol. 2010 Feb 24;10:35. doi: 10.1186/1471-2229-10-35.

24.

Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

Philippe N, Boureux A, Bréhélin L, Tarhio J, Commes T, Rivals E.

Nucleic Acids Res. 2009 Aug;37(15):e104. doi: 10.1093/nar/gkp492. Epub 2009 Jun 16.

25.

Transcriptome annotation using tandem SAGE tags.

Rivals E, Boureux A, Lejeune M, Ottones F, Pérez OP, Tarhio J, Pierrat F, Ruffle F, Commes T, Marti J.

Nucleic Acids Res. 2007;35(17):e108. Epub 2007 Aug 20.

26.
27.

Detecting microsatellites within genomes: significant variation among algorithms.

Leclercq S, Rivals E, Jarne P.

BMC Bioinformatics. 2007 Apr 18;8:125.

28.

Formation of the Arabidopsis pentatricopeptide repeat family.

Rivals E, Bruyère C, Toffano-Nioche C, Lecharny A.

Plant Physiol. 2006 Jul;141(3):825-39.

29.

A fast and specific alignment method for minisatellite maps.

Bérard S, Nicolas F, Buard J, Gascuel O, Rivals E.

Evol Bioinform Online. 2007 Feb 22;2:303-20.

30.

STAR: an algorithm to Search for Tandem Approximate Repeats.

Delgrange O, Rivals E.

Bioinformatics. 2004 Nov 1;20(16):2812-20. Epub 2004 Jun 4.

PMID:
15180940
31.

Comparison of minisatellites.

Bérard S, Rivals E.

J Comput Biol. 2003;10(3-4):357-72.

PMID:
12935333
32.

GeneNest: automated generation and visualization of gene indices.

Haas SA, Beissbarth T, Rivals E, Krause A, Vingron M.

Trends Genet. 2000 Nov;16(11):521-3. No abstract available.

PMID:
12199289
33.

Location of repetitive regions in sequences by optimizing a compression method.

Delgrange O, Dauchet M, Rivals E.

Pac Symp Biocomput. 1999:254-65.

34.

Transformation distances: a family of dissimilarity measures based on movements of segments.

Varré JS, Delahaye JP, Rivals E.

Bioinformatics. 1999 Mar;15(3):194-202.

PMID:
10222406
35.

Computational approaches to identify leucine zippers.

Bornberg-Bauer E, Rivals E, Vingron M.

Nucleic Acids Res. 1998 Jun 1;26(11):2740-6.

36.

Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences.

Rivals E, Delgrange O, Delahaye JP, Dauchet M, Delorme MO, Hénaut A, Ollivier E.

Comput Appl Biosci. 1997 Apr;13(2):131-6.

PMID:
9146959
37.

Compression and genetic sequence analysis.

Rivals E, Dauchet M, Delahaye JP, Delgrange O.

Biochimie. 1996;78(5):315-22.

PMID:
8905150

Supplemental Content

Loading ...
Support Center