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Items: 1 to 50 of 69

1.

Ample Arsenite Bio-Oxidation Activity in Bangladesh Drinking Water Wells: A Bonanza for Bioremediation?

Hassan Z, Sultana M, Khan SI, Braster M, Röling WFM, Westerhoff HV.

Microorganisms. 2019 Aug 8;7(8). pii: E246. doi: 10.3390/microorganisms7080246.

2.

Subsurface landfill leachate contamination affects microbial metabolic potential and gene expression in the Banisveld aquifer.

Tas N, Brandt BW, Braster M, van Breukelen BM, Röling WFM.

FEMS Microbiol Ecol. 2018 Oct 1;94(10). doi: 10.1093/femsec/fiy156.

3.

Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats.

Marozava S, Vargas-López R, Tian Y, Merl-Pham J, Braster M, Meckenstock RU, Smidt H, Röling WFM, Westerhoff HV.

Environ Microbiol. 2018 Jul;20(7):2652-2669. doi: 10.1111/1462-2920.14295.

PMID:
29921035
4.

Formulation and stabilization of an Arthrobacter strain with good storage stability and 4-chlorophenol-degradation activity for bioremediation.

Bjerketorp J, Röling WFM, Feng XM, Garcia AH, Heipieper HJ, Håkansson S.

Appl Microbiol Biotechnol. 2018 Feb;102(4):2031-2040. doi: 10.1007/s00253-017-8706-6. Epub 2018 Jan 18.

5.

Compositional Stability of the Bacterial Community in a Climate-Sensitive Sub-Arctic Peatland.

Weedon JT, Kowalchuk GA, Aerts R, Freriks S, Röling WF, van Bodegom PM.

Front Microbiol. 2017 Mar 7;8:317. doi: 10.3389/fmicb.2017.00317. eCollection 2017.

6.

Model-based quantification of metabolic interactions from dynamic microbial-community data.

Hanemaaijer M, Olivier BG, Röling WF, Bruggeman FJ, Teusink B.

PLoS One. 2017 Mar 9;12(3):e0173183. doi: 10.1371/journal.pone.0173183. eCollection 2017.

7.

Physiological and Transcriptome Response of the Polycyclic Aromatic Hydrocarbon Degrading Novosphingobium sp. LH128 after Inoculation in Soil.

Fida TT, Moreno-Forero SK, Breugelmans P, Heipieper HJ, Röling WF, Springael D.

Environ Sci Technol. 2017 Feb 7;51(3):1570-1579. doi: 10.1021/acs.est.6b03822. Epub 2017 Jan 18.

PMID:
28040887
8.

Resilience of Soil Microbial Communities to Metals and Additional Stressors: DNA-Based Approaches for Assessing "Stress-on-Stress" Responses.

Azarbad H, van Gestel CA, Niklińska M, Laskowski R, Röling WF, van Straalen NM.

Int J Mol Sci. 2016 Jun 14;17(6). pii: E933. doi: 10.3390/ijms17060933. Review.

9.

The microbiome of Folsomia candida: an assessment of bacterial diversity in a Wolbachia-containing animal.

Agamennone V, Jakupović D, Weedon JT, Suring WJ, van Straalen NM, Roelofs D, Röling WF.

FEMS Microbiol Ecol. 2015 Nov;91(11). pii: fiv128. doi: 10.1093/femsec/fiv128. Epub 2015 Oct 22.

PMID:
26499484
10.

Reactive transport modeling of subsurface arsenic removal systems in rural Bangladesh.

Rahman MM, Bakker M, Patty CH, Hassan Z, Röling WF, Ahmed KM, van Breukelen BM.

Sci Total Environ. 2015 Dec 15;537:277-93. doi: 10.1016/j.scitotenv.2015.07.140. Epub 2015 Aug 15.

PMID:
26282762
11.

The Significance of Microbe-Mineral-Biomarker Interactions in the Detection of Life on Mars and Beyond.

Röling WF, Aerts JW, Patty CH, ten Kate IL, Ehrenfreund P, Direito SO.

Astrobiology. 2015 Jun;15(6):492-507. doi: 10.1089/ast.2014.1276.

12.

Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure.

Hanemaaijer M, Röling WF, Olivier BG, Khandelwal RA, Teusink B, Bruggeman FJ.

Front Microbiol. 2015 Mar 19;6:213. doi: 10.3389/fmicb.2015.00213. eCollection 2015.

13.

Diverse arsenic- and iron-cycling microbial communities in arsenic-contaminated aquifers used for drinking water in Bangladesh.

Hassan Z, Sultana M, van Breukelen BM, Khan SI, Röling WF.

FEMS Microbiol Ecol. 2015 Apr;91(4). pii: fiv026. doi: 10.1093/femsec/fiv026. Epub 2015 Mar 15.

PMID:
25778510
14.

Microbial community composition and functions are resilient to metal pollution along two forest soil gradients.

Azarbad H, Niklińska M, Laskowski R, van Straalen NM, van Gestel CA, Zhou J, He Z, Wen C, Röling WF.

FEMS Microbiol Ecol. 2015 Jan;91(1):1-11. doi: 10.1093/femsec/fiu003. Epub 2014 Dec 5.

15.

Maths on microbes: adding microbial ecophysiology to metagenomics.

Röling WF.

Microb Biotechnol. 2015 Jan;8(1):21-2. doi: 10.1111/1751-7915.12233. Epub 2014 Dec 9. No abstract available.

16.

Stability and resilience of oral microcosms toward acidification and Candida outgrowth by arginine supplementation.

Koopman JE, Röling WF, Buijs MJ, Sissons CH, ten Cate JM, Keijser BJ, Crielaard W, Zaura E.

Microb Ecol. 2015 Feb;69(2):422-33. doi: 10.1007/s00248-014-0535-x. Epub 2014 Nov 30.

PMID:
25433583
17.

Biota and biomolecules in extreme environments on Earth: implications for life detection on Mars.

Aerts JW, Röling WF, Elsaesser A, Ehrenfreund P.

Life (Basel). 2014 Oct 13;4(4):535-65. doi: 10.3390/life4040535. Review.

18.

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats.

Marozava S, Röling WF, Seifert J, Küffner R, von Bergen M, Meckenstock RU.

Syst Appl Microbiol. 2014 Jun;37(4):287-95. doi: 10.1016/j.syapm.2014.02.005. Epub 2014 Apr 13.

19.

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources.

Marozava S, Röling WF, Seifert J, Küffner R, von Bergen M, Meckenstock RU.

Syst Appl Microbiol. 2014 Jun;37(4):277-86. doi: 10.1016/j.syapm.2014.02.004. Epub 2014 Apr 14.

20.
21.

Systematic evaluation of bias in microbial community profiles induced by whole genome amplification.

Direito SO, Zaura E, Little M, Ehrenfreund P, Röling WF.

Environ Microbiol. 2014 Mar;16(3):643-57. doi: 10.1111/1462-2920.12365. Epub 2014 Jan 23.

PMID:
24372985
22.

Interactions between accumulated copper, bacterial community structure and histamine levels in crayfish meat during storage.

Soedarini B, van Gestel CA, van Straalen NM, Widianarko B, Röling WF.

J Sci Food Agric. 2014 Aug;94(10):2023-9. doi: 10.1002/jsfa.6519. Epub 2014 Jan 15.

PMID:
24310583
23.

Impacts of shallow geothermal energy production on redox processes and microbial communities.

Bonte M, Röling WF, Zaura E, van der Wielen PW, Stuyfzand PJ, van Breukelen BM.

Environ Sci Technol. 2013 Dec 17;47(24):14476-84. doi: 10.1021/es4030244. Epub 2013 Dec 4.

PMID:
24266518
24.

Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing.

Kuramae EE, Verbruggen E, Hillekens R, de Hollander M, Röling WF, van der Heijden MG, Kowalchuk GA.

PLoS One. 2013 Jul 18;8(7):e69973. doi: 10.1371/journal.pone.0069973. Print 2013.

25.

Community flux balance analysis for microbial consortia at balanced growth.

Khandelwal RA, Olivier BG, Röling WF, Teusink B, Bruggeman FJ.

PLoS One. 2013 May 31;8(5):e64567. doi: 10.1371/journal.pone.0064567. Print 2013.

26.

Microbial community structure and functioning along metal pollution gradients.

Azarbad H, Niklińska M, van Gestel CA, van Straalen NM, Röling WF, Laskowski R.

Environ Toxicol Chem. 2013 Sep;32(9):1992-2002. doi: 10.1002/etc.2269. Epub 2013 Jul 8.

PMID:
23637098
27.

Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting.

Verbruggen E, Kuramae EE, Hillekens R, de Hollander M, Kiers ET, Röling WF, Kowalchuk GA, van der Heijden MG.

Appl Environ Microbiol. 2012 Oct;78(20):7384-92. Epub 2012 Aug 10.

28.

Community assembly, species richness and nestedness of arbuscular mycorrhizal fungi in agricultural soils.

Verbruggen E, Van Der Heijden MG, Weedon JT, Kowalchuk GA, Röling WF.

Mol Ecol. 2012 May;21(10):2341-53. doi: 10.1111/j.1365-294X.2012.05534.x. Epub 2012 Mar 22.

PMID:
22439851
29.

Sensitive life detection strategies for low-biomass environments: optimizing extraction of nucleic acids adsorbing to terrestrial and Mars analogue minerals.

Direito SO, Marees A, Röling WF.

FEMS Microbiol Ecol. 2012 Jul;81(1):111-23. doi: 10.1111/j.1574-6941.2012.01325.x. Epub 2012 Mar 7.

30.

The influence of long-term copper contaminated agricultural soil at different pH levels on microbial communities and springtail transcriptional regulation.

de Boer TE, Taş N, Braster M, Temminghoff EJ, Röling WF, Roelofs D.

Environ Sci Technol. 2012 Jan 3;46(1):60-8. doi: 10.1021/es2013598. Epub 2011 Sep 16.

PMID:
21882881
31.

Microbial nitrogen transformation potential in surface run-off leachate from a tropical landfill.

Mangimbulude JC, van Straalen NM, Röling WF.

Waste Manag. 2012 Jan;32(1):77-87. doi: 10.1016/j.wasman.2011.07.029. Epub 2011 Aug 30.

PMID:
21880479
32.

Molecular diversity and distribution of aromatic hydrocarbon-degrading anaerobes across a landfill leachate plume.

Staats M, Braster M, Röling WF.

Environ Microbiol. 2011 May;13(5):1216-27. doi: 10.1111/j.1462-2920.2010.02421.x. Epub 2011 Jan 31.

PMID:
21281422
33.

Systems approaches to microbial communities and their functioning.

Röling WF, Ferrer M, Golyshin PN.

Curr Opin Biotechnol. 2010 Aug;21(4):532-8. doi: 10.1016/j.copbio.2010.06.007. Epub 2010 Jul 14. Review.

PMID:
20637597
34.

Microbial community- and metabolite dynamics of an anoxic dechlorinating bioreactor.

Maphosa F, Smidt H, de Vos WM, Röling WF.

Environ Sci Technol. 2010 Jul 1;44(13):4884-90. doi: 10.1021/es903721s.

PMID:
20540543
35.

Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils.

Verbruggen E, Röling WF, Gamper HA, Kowalchuk GA, Verhoef HA, van der Heijden MG.

New Phytol. 2010 Jun;186(4):968-79. doi: 10.1111/j.1469-8137.2010.03230.x. Epub 2010 Mar 22.

36.

A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor.

Weelink SA, van Doesburg W, Saia FT, Rijpstra WI, Röling WF, Smidt H, Stams AJ.

FEMS Microbiol Ecol. 2009 Dec;70(3):575-85. doi: 10.1111/j.1574-6941.2009.00778.x. Epub 2009 Sep 7.

37.

Towards understanding inter-strain attachment variations of Escherichia coli during transport in saturated quartz sand.

Foppen JW, Lutterodt G, Röling WF, Uhlenbrook S.

Water Res. 2010 Feb;44(4):1202-12. doi: 10.1016/j.watres.2009.08.034. Epub 2009 Sep 1.

PMID:
19765793
38.

How Geobacteraceae may dominate subsurface biodegradation: physiology of Geobacter metallireducens in slow-growth habitat-simulating retentostats.

Lin B, Westerhoff HV, Röling WF.

Environ Microbiol. 2009 Sep;11(9):2425-33. doi: 10.1111/j.1462-2920.2009.01971.x. Epub 2009 Jul 22.

PMID:
19638178
39.

Effects of probiotic Lactobacillus salivarius W24 on the compositional stability of oral microbial communities.

Pham LC, van Spanning RJ, Röling WF, Prosperi AC, Terefework Z, Ten Cate JM, Crielaard W, Zaura E.

Arch Oral Biol. 2009 Feb;54(2):132-7. doi: 10.1016/j.archoralbio.2008.09.007. Epub 2008 Oct 30.

PMID:
18976742
40.

Seasonal dynamics in leachate hydrochemistry and natural attenuation in surface run-off water from a tropical landfill.

Mangimbulude JC, van Breukelen BM, Krave AS, van Straalen NM, Röling WF.

Waste Manag. 2009 Feb;29(2):829-38. doi: 10.1016/j.wasman.2008.06.020. Epub 2008 Oct 10.

PMID:
18848774
41.

Spatial heterogeneity in sediment-associated bacterial and eukaryotic communities in a landfill leachate-contaminated aquifer.

Brad T, van Breukelen BM, Braster M, van Straalen NM, Röling WF.

FEMS Microbiol Ecol. 2008 Sep;65(3):534-43. doi: 10.1111/j.1574-6941.2008.00533.x. Epub 2008 Jul 8.

42.

Eukaryotic diversity in an anaerobic aquifer polluted with landfill leachate.

Brad T, Braster M, van Breukelen BM, van Straalen NM, Röling WF.

Appl Environ Microbiol. 2008 Jul;74(13):3959-68. doi: 10.1128/AEM.02820-07. Epub 2008 May 9.

43.

Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer.

Botton S, van Harmelen M, Braster M, Parsons JR, Röling WF.

FEMS Microbiol Ecol. 2007 Oct;62(1):118-30. Epub 2007 Sep 3.

44.

Phylogenetic and physiological diversity of dissimilatory ferric iron reducers in sediments of the polluted Scheldt estuary, Northwest Europe.

Lin B, Hyacinthe C, Bonneville S, Braster M, Van Cappellen P, Röling WF.

Environ Microbiol. 2007 Aug;9(8):1956-68.

PMID:
17635542
45.
46.

Ecological control analysis: being(s) in control of mass flux and metabolite concentrations in anaerobic degradation processes.

Röling WF, van Breukelen BM, Bruggeman FJ, Westerhoff HV.

Environ Microbiol. 2007 Feb;9(2):500-11.

PMID:
17222148
47.

Low nitrification rates in acid Scots pine forest soils are due to pH-related factors.

Nugroho RA, Röling WF, Laverman AM, Verhoef HA.

Microb Ecol. 2007 Jan;53(1):89-97. Epub 2006 Dec 22.

PMID:
17186151
48.

Microbial communities in the world's largest acidic volcanic lake, Kawah Ijen in Indonesia, and in the Banyupahit river originating from it.

Löhr AJ, Laverman AM, Braster M, van Straalen NM, Röling WF.

Microb Ecol. 2006 Nov;52(4):609-18. Epub 2006 Oct 11.

PMID:
17033856
49.

Acidophilic microbial communities associated with a natural, biodegraded hydrocarbon seepage.

Röling WF, Ortega-Lucach S, Larter SR, Head IM.

J Appl Microbiol. 2006 Aug;101(2):290-9.

50.

Marine microorganisms make a meal of oil.

Head IM, Jones DM, Röling WF.

Nat Rev Microbiol. 2006 Mar;4(3):173-82. Review.

PMID:
16489346

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