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De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes in Pristionchus Nematodes.

Prabh N, Rödelsperger C.

G3 (Bethesda). 2019 May 14. pii: g3.400326.2019. doi: 10.1534/g3.119.400326. [Epub ahead of print]


Two new Species of Pristionchus (Nematoda: Diplogastridae) include the Gonochoristic Sister Species of P. fissidentatus.

Herrmann M, Kanzaki N, Weiler C, Yoshida K, RÖdelsperger C, Sommer RJ.

J Nematol. 2019;51:1-14. doi: 10.21307/jofnem-2019-024.


Characterization of a non-sexual population of Strongyloides stercoralis with hybrid 18S rDNA haplotypes in Guangxi, Southern China.

Zhou S, Fu X, Pei P, Kucka M, Liu J, Tang L, Zhan T, He S, Chan YF, Rödelsperger C, Liu D, Streit A.

PLoS Negl Trop Dis. 2019 May 6;13(5):e0007396. doi: 10.1371/journal.pntd.0007396. eCollection 2019 May.


Small peptide-mediated self-recognition prevents cannibalism in predatory nematodes.

Lightfoot JW, Wilecki M, Rödelsperger C, Moreno E, Susoy V, Witte H, Sommer RJ.

Science. 2019 Apr 5;364(6435):86-89. doi: 10.1126/science.aav9856.


Two New Species of Pristionchus (Nematoda: Diplogastridae) from Taiwan and the Definition of the pacificus Species-Complex Sensu Stricto.

Yoshida K, Herrmann M, Kanzaki N, Weiler C, Rödelsperger C, Sommer RJ.

J Nematol. 2018;50(3):355-368. doi: 10.21307/jofnem-2018-019.


DAF-19/RFX controls ciliogenesis and influences oxygen-induced social behaviors in Pristionchus pacificus.

Moreno E, Lenuzzi M, Rödelsperger C, Prabh N, Witte H, Roeseler W, Riebesell M, Sommer RJ.

Evol Dev. 2018 Nov;20(6):233-243. doi: 10.1111/ede.12271. Epub 2018 Sep 26.


Phylotranscriptomics of Pristionchus Nematodes Reveals Parallel Gene Loss in Six Hermaphroditic Lineages.

Rödelsperger C, Röseler W, Prabh N, Yoshida K, Weiler C, Herrmann M, Sommer RJ.

Curr Biol. 2018 Oct 8;28(19):3123-3127.e5. doi: 10.1016/j.cub.2018.07.041. Epub 2018 Sep 20.


Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes.

Prabh N, Roeseler W, Witte H, Eberhardt G, Sommer RJ, Rödelsperger C.

Genome Res. 2018 Nov;28(11):1664-1674. doi: 10.1101/gr.234971.118. Epub 2018 Sep 19.


Two independent sulfation processes regulate mouth-form plasticity in the nematode Pristionchus pacificus.

Namdeo S, Moreno E, Rödelsperger C, Baskaran P, Witte H, Sommer RJ.

Development. 2018 Jul 2;145(13). pii: dev166272. doi: 10.1242/dev.166272.


A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus.

Sieriebriennikov B, Prabh N, Dardiry M, Witte H, Röseler W, Kieninger MR, Rödelsperger C, Sommer RJ.

Cell Rep. 2018 Jun 5;23(10):2835-2843.e4. doi: 10.1016/j.celrep.2018.05.008.


Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions.

Akduman N, Rödelsperger C, Sommer RJ.

PLoS One. 2018 Jun 4;13(6):e0198018. doi: 10.1371/journal.pone.0198018. eCollection 2018.


Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis.

Falcke JM, Bose N, Artyukhin AB, Rödelsperger C, Markov GV, Yim JJ, Grimm D, Claassen MH, Panda O, Baccile JA, Zhang YK, Le HH, Jolic D, Schroeder FC, Sommer RJ.

Cell Chem Biol. 2018 Jun 21;25(6):787-796.e12. doi: 10.1016/j.chembiol.2018.04.004. Epub 2018 May 17.


Full mitochondrial and nuclear genome comparison confirms that Onchocerca sp. "Siisa" is Onchocerca ochengi.

Jaleta TG, Rödelsperger C, Abanda B, Eisenbarth A, Achukwi MD, Renz A, Streit A.

Parasitol Res. 2018 Apr;117(4):1069-1077. doi: 10.1007/s00436-018-5783-0. Epub 2018 Feb 5.


Samplings of Millipedes in Japan and Scarab Beetles in Hong Kong result in five new Species of Pristionchus (Nematoda: Diplogastridae).

Kanzaki N, Herrmann M, Yoshida K, Weiler C, Rödelsperger C, Sommer RJ.

J Nematol. 2018;50(4):587-610. doi: 10.21307/jofnem-2018-044.


Comparative Genomics of Gene Loss and Gain in Caenorhabditis and Other Nematodes.

Rödelsperger C.

Methods Mol Biol. 2018;1704:419-432. doi: 10.1007/978-1-4939-7463-4_16.


Regulation of hyperoxia-induced social behaviour in Pristionchus pacificus nematodes requires a novel cilia-mediated environmental input.

Moreno E, Sieriebriennikov B, Witte H, Rödelsperger C, Lightfoot JW, Sommer RJ.

Sci Rep. 2017 Dec 14;7(1):17550. doi: 10.1038/s41598-017-18019-0.


Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus.

Rödelsperger C, Meyer JM, Prabh N, Lanz C, Bemm F, Sommer RJ.

Cell Rep. 2017 Oct 17;21(3):834-844. doi: 10.1016/j.celrep.2017.09.077.


Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus.

Baskaran P, Jaleta TG, Streit A, Rödelsperger C.

Genome Biol Evol. 2017 Mar 1;9(3):790-801. doi: 10.1093/gbe/evx040.


Variation in rates of spontaneous male production within the nematode species Pristionchus pacificus supports an adaptive role for males and outcrossing.

Morgan K, McGaughran A, Rödelsperger C, Sommer RJ.

BMC Evol Biol. 2017 Feb 23;17(1):57. doi: 10.1186/s12862-017-0873-7.


Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island.

Meyer JM, Baskaran P, Quast C, Susoy V, Rödelsperger C, Glöckner FO, Sommer RJ.

Environ Microbiol. 2017 Apr;19(4):1476-1489. doi: 10.1111/1462-2920.13697. Epub 2017 Mar 2.


Parasitological and transcriptomic comparison of Strongyloides ratti infections in natural and in suboptimal permissive hosts.

Jaleta TG, Rödelsperger C, Streit A.

Exp Parasitol. 2017 Sep;180:112-118. doi: 10.1016/j.exppara.2016.12.003. Epub 2016 Dec 7.


Life History Responses and Gene Expression Profiles of the Nematode Pristionchus pacificus Cultured on Cryptococcus Yeasts.

Sanghvi GV, Baskaran P, Röseler W, Sieriebriennikov B, Rödelsperger C, Sommer RJ.

PLoS One. 2016 Oct 14;11(10):e0164881. doi: 10.1371/journal.pone.0164881. eCollection 2016.


First insights into the nature and evolution of antisense transcription in nematodes.

Rödelsperger C, Menden K, Serobyan V, Witte H, Baskaran P.

BMC Evol Biol. 2016 Aug 22;16(1):165. doi: 10.1186/s12862-016-0740-y.


Chromatin remodelling and antisense-mediated up-regulation of the developmental switch gene eud-1 control predatory feeding plasticity.

Serobyan V, Xiao H, Namdeo S, Rödelsperger C, Sieriebriennikov B, Witte H, Röseler W, Sommer RJ.

Nat Commun. 2016 Aug 4;7:12337. doi: 10.1038/ncomms12337.


The Nuclear Hormone Receptor NHR-40 Acts Downstream of the Sulfatase EUD-1 as Part of a Developmental Plasticity Switch in Pristionchus.

Kieninger MR, Ivers NA, Rödelsperger C, Markov GV, Sommer RJ, Ragsdale EJ.

Curr Biol. 2016 Aug 22;26(16):2174-9. doi: 10.1016/j.cub.2016.06.018. Epub 2016 Jul 21.


Draft Genome of the Scarab Beetle Oryctes borbonicus on La Réunion Island.

Meyer JM, Markov GV, Baskaran P, Herrmann M, Sommer RJ, Rödelsperger C.

Genome Biol Evol. 2016 Jul 12;8(7):2093-105. doi: 10.1093/gbe/evw133.


Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?

Prabh N, Rödelsperger C.

BMC Bioinformatics. 2016 May 31;17(1):226. doi: 10.1186/s12859-016-1102-x.


Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages.

McGaughran A, Rödelsperger C, Grimm DG, Meyer JM, Moreno E, Morgan K, Leaver M, Serobyan V, Rakitsch B, Borgwardt KM, Sommer RJ.

Mol Biol Evol. 2016 Sep;33(9):2257-72. doi: 10.1093/molbev/msw093. Epub 2016 May 9.


Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility.

Lightfoot JW, Chauhan VM, Aylott JW, Rödelsperger C.

BMC Res Notes. 2016 Mar 5;9:142. doi: 10.1186/s13104-016-1886-9.


Oxygen-induced social behaviours in Pristionchus pacificus have a distinct evolutionary history and genetic regulation from Caenorhabditis elegans.

Moreno E, McGaughran A, Rödelsperger C, Zimmer M, Sommer RJ.

Proc Biol Sci. 2016 Feb 24;283(1825):20152263. doi: 10.1098/rspb.2015.2263.


Large-scale diversification without genetic isolation in nematode symbionts of figs.

Susoy V, Herrmann M, Kanzaki N, Kruger M, Nguyen CN, Rödelsperger C, Röseler W, Weiler C, Giblin-Davis RM, Ragsdale EJ, Sommer RJ.

Sci Adv. 2016 Jan 15;2(1):e1501031. doi: 10.1126/sciadv.1501031. eCollection 2016 Jan.


Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus.

Baskaran P, Rödelsperger C, Prabh N, Serobyan V, Markov GV, Hirsekorn A, Dieterich C.

BMC Evol Biol. 2015 Sep 15;15:185. doi: 10.1186/s12862-015-0466-2.


Differential chromatin amplification and chromosome complements in the germline of Strongyloididae (Nematoda).

Kulkarni A, Holz A, Rödelsperger C, Harbecke D, Streit A.

Chromosoma. 2016 Mar;125(1):125-36. doi: 10.1007/s00412-015-0532-y. Epub 2015 Jul 24.


Microevolution of Duplications and Deletions and Their Impact on Gene Expression in the Nematode Pristionchus pacificus.

Baskaran P, Rödelsperger C.

PLoS One. 2015 Jun 30;10(6):e0131136. doi: 10.1371/journal.pone.0131136. eCollection 2015.


The Orphan Gene dauerless Regulates Dauer Development and Intraspecific Competition in Nematodes by Copy Number Variation.

Mayer MG, Rödelsperger C, Witte H, Riebesell M, Sommer RJ.

PLoS Genet. 2015 Jun 18;11(6):e1005146. doi: 10.1371/journal.pgen.1005146. eCollection 2015 Jun.


Transcriptomic characterisation and genomic glimps into the toxigenic dinoflagellate Azadinium spinosum, with emphasis on polykeitde synthase genes.

Meyer JM, Rödelsperger C, Eichholz K, Tillmann U, Cembella A, McGaughran A, John U.

BMC Genomics. 2015 Jan 23;16:27. doi: 10.1186/s12864-014-1205-6.


Gene inactivation using the CRISPR/Cas9 system in the nematode Pristionchus pacificus.

Witte H, Moreno E, Rödelsperger C, Kim J, Kim JS, Streit A, Sommer RJ.

Dev Genes Evol. 2015 Jan;225(1):55-62. doi: 10.1007/s00427-014-0486-8. Epub 2014 Dec 30.


Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data.

Rödelsperger C, Neher RA, Weller AM, Eberhardt G, Witte H, Mayer WE, Dieterich C, Sommer RJ.

Genetics. 2014 Apr;196(4):1153-65. doi: 10.1534/genetics.113.159855. Epub 2014 Jan 17.


Opposing forces of A/T-biased mutations and G/C-biased gene conversions shape the genome of the nematode Pristionchus pacificus.

Weller AM, Rödelsperger C, Eberhardt G, Molnar RI, Sommer RJ.

Genetics. 2014 Apr;196(4):1145-52. doi: 10.1534/genetics.113.159863. Epub 2014 Jan 10.


A developmental switch coupled to the evolution of plasticity acts through a sulfatase.

Ragsdale EJ, Müller MR, Rödelsperger C, Sommer RJ.

Cell. 2013 Nov 7;155(4):922-33. doi: 10.1016/j.cell.2013.09.054.


TCR repertoire analysis by next generation sequencing allows complex differential diagnosis of T cell-related pathology.

Dziubianau M, Hecht J, Kuchenbecker L, Sattler A, Stervbo U, Rödelsperger C, Nickel P, Neumann AU, Robinson PN, Mundlos S, Volk HD, Thiel A, Reinke P, Babel N.

Am J Transplant. 2013 Nov;13(11):2842-54. doi: 10.1111/ajt.12431. Epub 2013 Sep 10.


Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations.

Ibrahim DM, Hansen P, Rödelsperger C, Stiege AC, Doelken SC, Horn D, Jäger M, Janetzki C, Krawitz P, Leschik G, Wagner F, Scheuer T, Schmidt-von Kegler M, Seemann P, Timmermann B, Robinson PN, Mundlos S, Hecht J.

Genome Res. 2013 Dec;23(12):2091-102. doi: 10.1101/gr.157610.113. Epub 2013 Aug 30.


New role for DCR-1/dicer in Caenorhabditis elegans innate immunity against the highly virulent bacterium Bacillus thuringiensis DB27.

Iatsenko I, Sinha A, Rödelsperger C, Sommer RJ.

Infect Immun. 2013 Oct;81(10):3942-57. doi: 10.1128/IAI.00700-13. Epub 2013 Aug 5.


Regulation of fibrillin-1 gene expression by Sp1.

Guo G, Rödelsperger C, Digweed M, Robinson PN.

Gene. 2013 Sep 25;527(2):448-55. doi: 10.1016/j.gene.2013.07.006. Epub 2013 Jul 13.


System-wide rewiring underlies behavioral differences in predatory and bacterial-feeding nematodes.

Bumbarger DJ, Riebesell M, Rödelsperger C, Sommer RJ.

Cell. 2013 Jan 17;152(1-2):109-19. doi: 10.1016/j.cell.2012.12.013.


The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptible to bacterial pathogens.

Rae R, Witte H, Rödelsperger C, Sommer RJ.

Int J Parasitol. 2012 Jul;42(8):747-53. doi: 10.1016/j.ijpara.2012.05.005. Epub 2012 Jun 13.


Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects.

Rödelsperger C, Sommer RJ.

BMC Evol Biol. 2011 Aug 15;11:239. doi: 10.1186/1471-2148-11-239.


Neurofibromin (Nf1) is required for skeletal muscle development.

Kossler N, Stricker S, Rödelsperger C, Robinson PN, Kim J, Dietrich C, Osswald M, Kühnisch J, Stevenson DA, Braun T, Mundlos S, Kolanczyk M.

Hum Mol Genet. 2011 Jul 15;20(14):2697-709. doi: 10.1093/hmg/ddr149. Epub 2011 Apr 9.


Identity-by-descent filtering of exome sequence data for disease-gene identification in autosomal recessive disorders.

Rödelsperger C, Krawitz P, Bauer S, Hecht J, Bigham AW, Bamshad M, de Condor BJ, Schweiger MR, Robinson PN.

Bioinformatics. 2011 Mar 15;27(6):829-36. doi: 10.1093/bioinformatics/btr022. Epub 2011 Jan 28.


FGFR3 is a target of the homeobox transcription factor SHOX in limb development.

Decker E, Durand C, Bender S, Rödelsperger C, Glaser A, Hecht J, Schneider KU, Rappold G.

Hum Mol Genet. 2011 Apr 15;20(8):1524-35. doi: 10.1093/hmg/ddr030. Epub 2011 Jan 27.


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