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Items: 37

1.

Inferring Structural Ensembles of Flexible and Dynamic Macromolecules Using Bayesian, Maximum Entropy, and Minimal-Ensemble Refinement Methods.

Köfinger J, Różycki B, Hummer G.

Methods Mol Biol. 2019;2022:341-352. doi: 10.1007/978-1-4939-9608-7_14.

PMID:
31396910
2.

Convergent evolution in the mechanisms of ACBD3 recruitment to picornavirus replication sites.

Horova V, Lyoo H, Różycki B, Chalupska D, Smola M, Humpolickova J, Strating JRPM, van Kuppeveld FJM, Boura E, Klima M.

PLoS Pathog. 2019 Aug 5;15(8):e1007962. doi: 10.1371/journal.ppat.1007962. eCollection 2019 Aug.

3.

Phosphatidylinositol 4-kinase IIIβ (PI4KB) forms highly flexible heterocomplexes that include ACBD3, 14-3-3, and Rab11 proteins.

Chalupska D, Różycki B, Humpolickova J, Faltova L, Klima M, Boura E.

Sci Rep. 2019 Jan 24;9(1):567. doi: 10.1038/s41598-018-37158-6.

4.

Membrane fluctuations and acidosis regulate cooperative binding of 'marker of self' protein CD47 with the macrophage checkpoint receptor SIRPα.

Steinkühler J, Różycki B, Alvey C, Lipowsky R, Weikl TR, Dimova R, Discher DE.

J Cell Sci. 2018 Jul 16;132(4). pii: jcs216770. doi: 10.1242/jcs.216770.

5.

Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module.

Wojciechowski M, Różycki B, Huy PDQ, Li MS, Bayer EA, Cieplak M.

Sci Rep. 2018 Mar 22;8(1):5051. doi: 10.1038/s41598-018-23380-9.

6.

Structures of Dynamic Protein Complexes: Hybrid Techniques to Study MAP Kinase Complexes and the ESCRT System.

Peti W, Page R, Boura E, Różycki B.

Methods Mol Biol. 2018;1688:375-389. doi: 10.1007/978-1-4939-7386-6_17.

7.

Structural analysis of phosphatidylinositol 4-kinase IIIβ (PI4KB) - 14-3-3 protein complex reveals internal flexibility and explains 14-3-3 mediated protection from degradation in vitro.

Chalupska D, Eisenreichova A, Różycki B, Rezabkova L, Humpolickova J, Klima M, Boura E.

J Struct Biol. 2017 Oct;200(1):36-44. doi: 10.1016/j.jsb.2017.08.006. Epub 2017 Aug 31.

PMID:
28864297
8.

The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes.

Różycki B, Cazade PA, O'Mahony S, Thompson D, Cieplak M.

Phys Chem Chem Phys. 2017 Aug 16;19(32):21414-21425. doi: 10.1039/c7cp04114d.

PMID:
28758665
9.
10.

Erratum: "Membrane curvature generated by asymmetric depletion layers of ions, small molecules, and nanoparticles" [J. Chem. Phys. 145, 074117 (2016)].

Różycki B, Lipowsky R.

J Chem Phys. 2017 Mar 14;146(10):109901. doi: 10.1063/1.4978679. No abstract available.

PMID:
28298093
11.

Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein.

Klima M, Chalupska D, Różycki B, Humpolickova J, Rezabkova L, Silhan J, Baumlova A, Dubankova A, Boura E.

Structure. 2017 Feb 7;25(2):219-230. doi: 10.1016/j.str.2016.11.021. Epub 2017 Jan 5.

12.
13.

Membrane curvature generated by asymmetric depletion layers of ions, small molecules, and nanoparticles.

Różycki B, Lipowsky R.

J Chem Phys. 2016 Aug 21;145(7):074117. doi: 10.1063/1.4960772. Erratum in: J Chem Phys. 2017 Mar 14;146(10):109901.

PMID:
27544097
14.

Sampling Enrichment toward Target Structures Using Hybrid Molecular Dynamics-Monte Carlo Simulations.

Yang K, Różycki B, Cui F, Shi C, Chen W, Li Y.

PLoS One. 2016 May 26;11(5):e0156043. doi: 10.1371/journal.pone.0156043. eCollection 2016.

15.

Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum.

Różycki B, Cieplak M, Czjzek M.

J Struct Biol. 2015 Jul;191(1):68-75. doi: 10.1016/j.jsb.2015.05.004. Epub 2015 May 23.

PMID:
26008791
16.

Spontaneous curvature of bilayer membranes from molecular simulations: asymmetric lipid densities and asymmetric adsorption.

Różycki B, Lipowsky R.

J Chem Phys. 2015 Feb 7;142(5):054101. doi: 10.1063/1.4906149.

PMID:
25662630
17.

Citrate synthase proteins in extremophilic organisms: studies within a structure-based model.

Różycki B, Cieplak M.

J Chem Phys. 2014 Dec 21;141(23):235102. doi: 10.1063/1.4903747.

PMID:
25527961
18.

Large, dynamic, multi-protein complexes: a challenge for structural biology.

Różycki B, Boura E.

J Phys Condens Matter. 2014 Nov 19;26(46):463103. doi: 10.1088/0953-8984/26/46/463103. Epub 2014 Oct 22. Review.

PMID:
25335513
19.

The crystal structure of the phosphatidylinositol 4-kinase IIα.

Baumlova A, Chalupska D, Róźycki B, Jovic M, Wisniewski E, Klima M, Dubankova A, Kloer DP, Nencka R, Balla T, Boura E.

EMBO Rep. 2014 Oct;15(10):1085-92. doi: 10.15252/embr.201438841. Epub 2014 Aug 28.

20.

Unbinding and unfolding of adhesion protein complexes through stretching: interplay between shear and tensile mechanical clamps.

Różycki B, Mioduszewski Ł, Cieplak M.

Proteins. 2014 Nov;82(11):3144-53. doi: 10.1002/prot.24674. Epub 2014 Sep 3.

PMID:
25142868
21.

Membrane-elasticity model of Coatless vesicle budding induced by ESCRT complexes.

Różycki B, Boura E, Hurley JH, Hummer G.

PLoS Comput Biol. 2012;8(10):e1002736. doi: 10.1371/journal.pcbi.1002736. Epub 2012 Oct 18.

22.

Solution structure of the ESCRT-I and -II supercomplex: implications for membrane budding and scission.

Boura E, Różycki B, Chung HS, Herrick DZ, Canagarajah B, Cafiso DS, Eaton WA, Hummer G, Hurley JH.

Structure. 2012 May 9;20(5):874-86. doi: 10.1016/j.str.2012.03.008.

23.

Structural basis of p38α regulation by hematopoietic tyrosine phosphatase.

Francis DM, Różycki B, Koveal D, Hummer G, Page R, Peti W.

Nat Chem Biol. 2011 Nov 6;7(12):916-24. doi: 10.1038/nchembio.707.

24.

Resting and active states of the ERK2:HePTP complex.

Francis DM, Różycki B, Tortajada A, Hummer G, Peti W, Page R.

J Am Chem Soc. 2011 Nov 2;133(43):17138-41. doi: 10.1021/ja2075136. Epub 2011 Oct 10.

25.

Line tension and stability of domains in cell-adhesion zones mediated by long and short receptor-ligand complexes.

Krobath H, Różycki B, Lipowsky R, Weikl TR.

PLoS One. 2011;6(8):e23284. doi: 10.1371/journal.pone.0023284. Epub 2011 Aug 17.

26.

Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy.

Boura E, Rózycki B, Herrick DZ, Chung HS, Vecer J, Eaton WA, Cafiso DS, Hummer G, Hurley JH.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9437-42. doi: 10.1073/pnas.1101763108. Epub 2011 May 19.

27.

SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions.

Różycki B, Kim YC, Hummer G.

Structure. 2011 Jan 12;19(1):109-16. doi: 10.1016/j.str.2010.10.006.

28.

Crystal structure and allosteric activation of protein kinase C βII.

Leonard TA, Różycki B, Saidi LF, Hummer G, Hurley JH.

Cell. 2011 Jan 7;144(1):55-66. doi: 10.1016/j.cell.2010.12.013.

29.

Membrane budding.

Hurley JH, Boura E, Carlson LA, Różycki B.

Cell. 2010 Dec 10;143(6):875-87. doi: 10.1016/j.cell.2010.11.030. Review.

30.

Stable patterns of membrane domains at corrugated substrates.

Rózycki B, Weikl TR, Lipowsky R.

Phys Rev Lett. 2008 Mar 7;100(9):098103. Epub 2008 Mar 7.

PMID:
18352753
31.

Stochastic resonance for adhesion of membranes with active stickers.

Rózycki B, Weikl TR, Lipowsky R.

Eur Phys J E Soft Matter. 2007 Jan;22(1):97-106. Epub 2007 Feb 21.

PMID:
17318287
32.

Adhesion of membranes via switchable molecules.

Rózycki B, Weikl TR, Lipowsky R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jun;73(6 Pt 1):061908. Epub 2006 Jun 16.

PMID:
16906865
33.

Adhesion of membranes with active stickers.

Rózycki B, Lipowsky R, Weikl TR.

Phys Rev Lett. 2006 Feb 3;96(4):048101. Epub 2006 Jan 31. Erratum in: Phys Rev Lett. 2006 Feb 10;96(5):059904.

PMID:
16486897
34.

[Case of Herman's syndrome].

Rózycki B.

Wiad Lek. 1980 Dec 1;33(23):1921-2. Polish. No abstract available.

PMID:
7245755
35.

[Case of facio-scapulo-humeral dystrophy].

Rózycki B.

Wiad Lek. 1978 Dec 15;31(24):1759-63. Polish. No abstract available.

PMID:
735090
36.

[Sporadic viral encephalitis].

Rôzycki B.

Wiad Lek. 1978 Nov 15;31(22):1617-9. Polish. No abstract available.

PMID:
735064
37.

[Disk displacement and sciatic neuralgia].

Rózycki B.

Pieleg Polozna. 1978;(10):1-2. Polish. No abstract available.

PMID:
251307

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