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Items: 20

1.

Gene Expression Deconvolution for Uncovering Molecular Signatures in Response to Therapy in Juvenile Idiopathic Arthritis.

Cui A, Quon G, Rosenberg AM, Yeung RS, Morris Q; BBOP Study Consortium.

PLoS One. 2016 May 31;11(5):e0156055. doi: 10.1371/journal.pone.0156055. eCollection 2016.

2.

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.

Marbach D, Lamparter D, Quon G, Kellis M, Kutalik Z, Bergmann S.

Nat Methods. 2016 Apr;13(4):366-70. doi: 10.1038/nmeth.3799. Epub 2016 Mar 7.

3.

Probabilistic Modeling of Imaging, Genetics and Diagnosis.

Batmanghelich NK, Dalca A, Quon G, Sabuncu M, Golland P.

IEEE Trans Med Imaging. 2016 Jul;35(7):1765-79. doi: 10.1109/TMI.2016.2527784. Epub 2016 Feb 11.

4.

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.

Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, Mellgren G, Hui CC, Hauner H, Kellis M.

N Engl J Med. 2015 Sep 3;373(10):895-907. doi: 10.1056/NEJMoa1502214. Epub 2015 Aug 19.

5.

ISOpureR: an R implementation of a computational purification algorithm of mixed tumour profiles.

Anghel CV, Quon G, Haider S, Nguyen F, Deshwar AG, Morris QD, Boutros PC.

BMC Bioinformatics. 2015 May 14;16:156. doi: 10.1186/s12859-015-0597-x.

6.

A rare cause of hearing loss in a child.

Musallam M, Quon G.

JAAPA. 2015 Apr;28(4):32-7. doi: 10.1097/01.JAA.0000459814.17285.64.

PMID:
25802938
7.

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease.

Gjoneska E, Pfenning AR, Mathys H, Quon G, Kundaje A, Tsai LH, Kellis M.

Nature. 2015 Feb 19;518(7539):365-9. doi: 10.1038/nature14252.

8.

Integrative analysis of 111 reference human epigenomes.

Roadmap Epigenomics Consortium, Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.

Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248.

9.

The benefits of selecting phenotype-specific variants for applications of mixed models in genomics.

Lippert C, Quon G, Kang EY, Kadie CM, Listgarten J, Heckerman D.

Sci Rep. 2013;3:1815. doi: 10.1038/srep01815.

10.

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction.

Quon G, Haider S, Deshwar AG, Cui A, Boutros PC, Morris Q.

Genome Med. 2013 Mar 28;5(3):29. doi: 10.1186/gm433.

11.

Patterns of methylation heritability in a genome-wide analysis of four brain regions.

Quon G, Lippert C, Heckerman D, Listgarten J.

Nucleic Acids Res. 2013 Feb 1;41(4):2095-104. doi: 10.1093/nar/gks1449. Epub 2013 Jan 8.

12.

PERT: a method for expression deconvolution of human blood samples from varied microenvironmental and developmental conditions.

Qiao W, Quon G, Csaszar E, Yu M, Morris Q, Zandstra PW.

PLoS Comput Biol. 2012;8(12):e1002838. doi: 10.1371/journal.pcbi.1002838. Epub 2012 Dec 20.

13.

Unsupervised detection of genes of influence in lung cancer using biological networks.

Goldenberg A, Mostafavi S, Quon G, Boutros PC, Morris QD.

Bioinformatics. 2011 Nov 15;27(22):3166-72. doi: 10.1093/bioinformatics/btr533. Epub 2011 Sep 28.

PMID:
21965819
14.

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure.

Li X, Quon G, Lipshitz HD, Morris Q.

RNA. 2010 Jun;16(6):1096-107. doi: 10.1261/rna.2017210. Epub 2010 Apr 23.

15.

ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing.

Quon G, Morris Q.

Bioinformatics. 2009 Nov 1;25(21):2882-9. doi: 10.1093/bioinformatics/btp378. Epub 2009 Jun 19.

16.

Conservation of core gene expression in vertebrate tissues.

Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR.

J Biol. 2009;8(3):33. doi: 10.1186/jbiol130. Epub 2009 Apr 16.

17.

Nh3D: a reference dataset of non-homologous protein structures.

Thiruv B, Quon G, Saldanha SA, Steipe B.

BMC Struct Biol. 2005 Jul 12;5:12.

18.

Jabiru: harnessing Java 3D behaviors for device and display portability.

Stromer JN, Quon GT, Gordon PM, Turinsky AL, Sensen CW.

IEEE Comput Graph Appl. 2005 Mar-Apr;25(2):70-80. No abstract available.

PMID:
15794151
19.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

20.

4D bioinformatics: a new look at the ribosome as an example.

Quon GT, Gordon P, Sensen CW.

IUBMB Life. 2003 Apr-May;55(4-5):279-83.

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