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Items: 42

1.

Niche partitioning of a pathogenic microbiome driven by chemical gradients.

Quinn RA, Comstock W, Zhang T, Morton JT, da Silva R, Tran A, Aksenov A, Nothias LF, Wangpraseurt D, Melnik AV, Ackermann G, Conrad D, Klapper I, Knight R, Dorrestein PC.

Sci Adv. 2018 Sep 26;4(9):eaau1908. doi: 10.1126/sciadv.aau1908. eCollection 2018 Sep.

2.

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism.

Galtier d'Auriac I, Quinn RA, Maughan H, Nothias LF, Little M, Kapono CA, Cobian A, Reyes BT, Green K, Quistad SD, Leray M, Smith JE, Dorrestein PC, Rohwer F, Deheyn DD, Hartmann AC.

Proc Biol Sci. 2018 Aug 15;285(1884). pii: 20181307. doi: 10.1098/rspb.2018.1307.

3.

Best practices for analysing microbiomes.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC.

Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Review.

PMID:
29795328
4.

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11685-11690. doi: 10.1073/pnas.1710248114. Epub 2017 Oct 12.

5.

Ecological networking of cystic fibrosis lung infections.

Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S.

NPJ Biofilms Microbiomes. 2016 Dec 2;2:4. doi: 10.1038/s41522-016-0002-1. eCollection 2016.

6.

Integrating Microbiome and Metabolome Data to Understand Infectious Airway Disease.

Quinn RA.

Am J Respir Crit Care Med. 2017 Oct 1;196(7):806-807. doi: 10.1164/rccm.201704-0671ED. No abstract available.

PMID:
28628375
7.

The WinCF Model - An Inexpensive and Tractable Microcosm of a Mucus Plugged Bronchiole to Study the Microbiology of Lung Infections.

Comstock WJ, Huh E, Weekes R, Watson C, Xu T, Dorrestein PC, Quinn RA.

J Vis Exp. 2017 May 8;(123). doi: 10.3791/55532.

PMID:
28518116
8.

Real-time PCR assay for Aquimarina macrocephali subsp. homaria and its distribution in shell disease lesions of Homarus americanus, Milne-Edwards, 1837, and environmental samples.

Quinn RA, Hazra S, Smolowitz R, Chistoserdov AY.

J Microbiol Methods. 2017 Aug;139:61-67. doi: 10.1016/j.mimet.2017.04.001. Epub 2017 Apr 3.

PMID:
28385456
9.

Balance Trees Reveal Microbial Niche Differentiation.

Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R.

mSystems. 2017 Jan 17;2(1). pii: e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb.

10.

Molecular Networking As a Drug Discovery, Drug Metabolism, and Precision Medicine Strategy.

Quinn RA, Nothias LF, Vining O, Meehan M, Esquenazi E, Dorrestein PC.

Trends Pharmacol Sci. 2017 Feb;38(2):143-154. doi: 10.1016/j.tips.2016.10.011. Epub 2016 Nov 11. Review.

PMID:
27842887
11.

From Sample to Multi-Omics Conclusions in under 48 Hours.

Quinn RA, Navas-Molina JA, Hyde ER, Song SJ, Vázquez-Baeza Y, Humphrey G, Gaffney J, Minich JJ, Melnik AV, Herschend J, DeReus J, Durant A, Dutton RJ, Khosroheidari M, Green C, da Silva R, Dorrestein PC, Knight R.

mSystems. 2016 Apr 26;1(2). pii: e00038-16. eCollection 2016 Mar-Apr.

12.

Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.

Petras D, Nothias LF, Quinn RA, Alexandrov T, Bandeira N, Bouslimani A, Castro-Falcón G, Chen L, Dang T, Floros DJ, Hook V, Garg N, Hoffner N, Jiang Y, Kapono CA, Koester I, Knight R, Leber CA, Ling TJ, Luzzatto-Knaan T, McCall LI, McGrath AP, Meehan MJ, Merritt JK, Mills RH, Morton J, Podvin S, Protsyuk I, Purdy T, Satterfield K, Searles S, Shah S, Shires S, Steffen D, White M, Todoric J, Tuttle R, Wojnicz A, Sapp V, Vargas F, Yang J, Zhang C, Dorrestein PC.

Anal Chem. 2016 Nov 15;88(22):10775-10784. Epub 2016 Oct 24.

PMID:
27732780
13.

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease.

Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P.

PeerJ. 2016 Aug 11;4:e2174. doi: 10.7717/peerj.2174. eCollection 2016.

14.

Correction to 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence'.

Quinn RA, Vermeij MJ, Hartmann AC, d'Auriac IG, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485. No abstract available.

15.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N.

Nat Biotechnol. 2016 Aug 9;34(8):828-837. doi: 10.1038/nbt.3597.

16.

Microbiome-wide association studies link dynamic microbial consortia to disease.

Gilbert JA, Quinn RA, Debelius J, Xu ZZ, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R.

Nature. 2016 Jul 7;535(7610):94-103. doi: 10.1038/nature18850. Review.

PMID:
27383984
17.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F.

Proc Biol Sci. 2016 Apr 27;283(1829). pii: 20160469. doi: 10.1098/rspb.2016.0469. Erratum in: Proc Biol Sci. 2016 Aug 31;283(1837). pii: 20161485. doi: 10.1098/rspb.2016.1485.

18.

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL.

ISME J. 2016 Jun;10(6):1483-98. doi: 10.1038/ismej.2015.207. Epub 2015 Dec 1.

19.

Illuminating the dark matter in metabolomics.

da Silva RR, Dorrestein PC, Quinn RA.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12549-50. doi: 10.1073/pnas.1516878112. Epub 2015 Oct 1. No abstract available.

20.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F.

ISME J. 2015 Mar 17;9(4):1052. doi: 10.1038/ismej.2014.266. No abstract available.

21.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F.

ISME J. 2015 Mar 17;9(4):1024-38. doi: 10.1038/ismej.2014.234. Erratum in: ISME J. 2015 Apr;9(4):1052.

22.

The community ecology of microbial molecules.

Quinn RA, Alexandrov T.

J Chem Ecol. 2014 Dec;40(11-12):1161-2. doi: 10.1007/s10886-014-0528-8. No abstract available.

23.

Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.

Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL.

MBio. 2014 Mar 18;5(2):e00956-13. doi: 10.1128/mBio.00956-13.

24.

Pathology of two forms of shell disease of the American lobster Homarus americanus Milne Edwards in Atlantic Canada.

Smolowitz R, Quinn RA, Cawthorn RJ, Summerfield RL, Chistoserdov AY.

J Fish Dis. 2014 Jun;37(6):577-81. doi: 10.1111/jfd.12136. Epub 2013 Aug 16. No abstract available.

PMID:
23952709
25.

Real-time metabolomics on living microorganisms using ambient electrospray ionization flow-probe.

Hsu CC, ElNaggar MS, Peng Y, Fang J, Sanchez LM, Mascuch SJ, Møller KA, Alazzeh EK, Pikula J, Quinn RA, Zeng Y, Wolfe BE, Dutton RJ, Gerwick L, Zhang L, Liu X, Månsson M, Dorrestein PC.

Anal Chem. 2013 Aug 6;85(15):7014-8. doi: 10.1021/ac401613x. Epub 2013 Jul 11.

26.

Bacterial communities associated with lesions of two forms of shell disease in the American lobster (Homarus americanus, Milne Edwards) from Atlantic Canada.

Quinn RA, Cawthorn RJ, Summerfield RL, Smolowitz R, Chistoserdov AY.

Can J Microbiol. 2013 Jun;59(6):380-90. doi: 10.1139/cjm-2012-0679. Epub 2013 Apr 19.

PMID:
23750952
27.

Culture-independent analysis of bacterial communities in hemolymph of American lobsters with epizootic shell disease.

Quinn RA, Smolowitz R, Chistoserdov AY.

Dis Aquat Organ. 2013 Mar 26;103(2):141-8. doi: 10.3354/dao02565.

PMID:
23548364
28.

Lesion bacterial communities in American lobsters with diet-induced shell disease.

Quinn RA, Metzler A, Tlusty M, Smolowitz RM, Leberg P, Chistoserdov AY.

Dis Aquat Organ. 2012 Apr 26;98(3):221-33. doi: 10.3354/dao02446.

PMID:
22535872
29.

Denaturing gradient gel electrophoresis for nonlethal detection of Aeromonas salmonicida in salmonid mucus and its potential for other bacterial fish pathogens.

Quinn RA, Stevenson RM.

Can J Microbiol. 2012 May;58(5):563-71. doi: 10.1139/w2012-024. Epub 2012 Apr 16.

PMID:
22506865
30.

Formation and properties of stabilized aluminum nanoparticles.

Meziani MJ, Bunker CE, Lu F, Li H, Wang W, Guliants EA, Quinn RA, Sun YP.

ACS Appl Mater Interfaces. 2009 Mar;1(3):703-9. doi: 10.1021/am800209m.

PMID:
20355993
31.

Single-walled carbon nanotube as a unique scaffold for the multivalent display of sugars.

Gu L, Luo PG, Wang H, Meziani MJ, Lin Y, Veca LM, Cao L, Lu F, Wang X, Quinn RA, Wang W, Zhang P, Lacher S, Sun YP.

Biomacromolecules. 2008 Sep;9(9):2408-18. doi: 10.1021/bm800395e. Epub 2008 Aug 20.

PMID:
18712920
32.
33.

Experimental determination of dust-particle charge in a discharge plasma at elevated pressures.

Ratynskaia S, Khrapak S, Zobnin A, Thoma MH, Kretschmer M, Usachev A, Yaroshenko V, Quinn RA, Morfill GE, Petrov O, Fortov V.

Phys Rev Lett. 2004 Aug 20;93(8):085001. Epub 2004 Aug 17.

PMID:
15447195
34.

Shock melting of a two-dimensional complex (dusty) plasma.

Samsonov D, Zhdanov SK, Quinn RA, Popel SI, Morfill GE.

Phys Rev Lett. 2004 Jun 25;92(25 Pt 1):255004. Epub 2004 Jun 23.

PMID:
15245019
35.

Particle interaction measurements in a Coulomb crystal using caged-particle motion.

Quinn RA, Goree J.

Phys Rev Lett. 2002 May 13;88(19):195001. Epub 2002 Apr 24.

PMID:
12005638
36.

Dissipative longitudinal solitons in a two-dimensional strongly coupled complex (dusty) plasma.

Samsonov D, Ivlev AV, Quinn RA, Morfill G, Zhdanov S.

Phys Rev Lett. 2002 Mar 4;88(9):095004. Epub 2002 Feb 14.

PMID:
11864019
37.

Experimental test of two-dimensional melting through disclination unbinding.

Quinn RA, Goree J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Nov;64(5 Pt 1):051404. Epub 2001 Oct 29.

PMID:
11735920
38.

Three-dimensional structure in a crystallized dusty plasma.

Pieper JB, Goree J, Quinn RA.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Nov;54(5):5636-5640. No abstract available.

PMID:
9965751
39.

Structural analysis of a Coulomb lattice in a dusty plasma.

Quinn RA, Cui C, Goree J, Pieper JB, Thomas H, Morfill GE.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Mar;53(3):R2049-R2052. No abstract available.

PMID:
9964604
40.

The sleep patterns of normal children.

Armstrong KL, Quinn RA, Dadds MR.

Med J Aust. 1994 Aug 1;161(3):202-6.

PMID:
8035724
41.

The 'use' of children.

Armstrong KL, Quinn RA.

J Paediatr Child Health. 1994 Feb;30(1):79. No abstract available.

PMID:
8148198
42.

"Just a mother".

Quinn RA, Armstrong KL.

Med J Aust. 1992 Nov 2;157(9):644. No abstract available.

PMID:
1406432

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