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The Role of SINE-VNTR-Alu (SVA) Retrotransposons in Shaping the Human Genome.

Gianfrancesco O, Geary B, Savage AL, Billingsley KJ, Bubb VJ, Quinn JP.

Int J Mol Sci. 2019 Nov 27;20(23). pii: E5977. doi: 10.3390/ijms20235977.


The potential for polyphosphate metabolism in Archaea and anaerobic polyphosphate formation in Methanosarcina mazei.

Paula FS, Chin JP, Schnürer A, Müller B, Manesiotis P, Waters N, Macintosh KA, Quinn JP, Connolly J, Abram F, McGrath JW, O'Flaherty V.

Sci Rep. 2019 Nov 19;9(1):17101. doi: 10.1038/s41598-019-53168-4.


Computational identification of key genes that may regulate gene expression reprogramming in Alzheimer's patients.

Potashkin JA, Bottero V, Santiago JA, Quinn JP.

PLoS One. 2019 Sep 23;14(9):e0222921. doi: 10.1371/journal.pone.0222921. eCollection 2019.


Mitochondria function associated genes contribute to Parkinson's Disease risk and later age at onset.

Billingsley KJ, Barbosa IA, Bandrés-Ciga S, Quinn JP, Bubb VJ, Deshpande C, Botia JA, Reynolds RH, Zhang D, Simpson MA, Blauwendraat C, Gan-Or Z, Gibbs JR, Nalls MA, Singleton A; International Parkinson’s Disease Genomics Consortium (IPDGC), Ryten M, Koks S.

NPJ Parkinsons Dis. 2019 May 22;5:8. doi: 10.1038/s41531-019-0080-x. eCollection 2019.


Tao Negatively Regulates BMP Signaling During Neuromuscular Junction Development in Drosophila.

Politano SF, Salemme RR, Ashley J, López-Rivera JA, Bakula TA, Puhalla KA, Quinn JP, Juszczak MJ, Phillip LK, Carrillo RA, Vanderzalm PJ.

Dev Neurobiol. 2019 Apr;79(4):335-349. doi: 10.1002/dneu.22681. Epub 2019 May 11.


Analysis of repetitive element expression in the blood and skin of patients with Parkinson's disease identifies differential expression of satellite elements.

Billingsley KJ, Lättekivi F, Planken A, Reimann E, Kurvits L, Kadastik-Eerme L, Kasterpalu KM, Bubb VJ, Quinn JP, Kõks S, Taba P.

Sci Rep. 2019 Mar 13;9(1):4369. doi: 10.1038/s41598-019-40869-z.


Treating the "E" in "G × E": Trauma-Informed Approaches and Psychological Therapy Interventions in Psychosis.

Gianfrancesco O, Bubb VJ, Quinn JP.

Front Psychiatry. 2019 Jan 30;10:9. doi: 10.3389/fpsyt.2019.00009. eCollection 2019. Review.


Transforming phosphorus use on the island of Ireland: A model for a sustainable system.

Macintosh KA, Chin J, Jacobs B, Cordell D, McDowell RW, Butler P, Haygarth PM, Williams P, Quinn JP, O'Flaherty V, McGrath JW.

Sci Total Environ. 2019 Mar 15;656:852-861. doi: 10.1016/j.scitotenv.2018.11.389. Epub 2018 Nov 29.


Retrotransposons in the development and progression of amyotrophic lateral sclerosis.

Savage AL, Schumann GG, Breen G, Bubb VJ, Al-Chalabi A, Quinn JP.

J Neurol Neurosurg Psychiatry. 2019 Mar;90(3):284-293. doi: 10.1136/jnnp-2018-319210. Epub 2018 Oct 10.


Non-coding genetic variation shaping mental health.

Quinn JP, Savage AL, Bubb VJ.

Curr Opin Psychol. 2019 Jun;27:18-24. doi: 10.1016/j.copsyc.2018.07.006. Epub 2018 Jul 24. Review.


The involvement of tau in nucleolar transcription and the stress response.

Maina MB, Bailey LJ, Wagih S, Biasetti L, Pollack SJ, Quinn JP, Thorpe JR, Doherty AJ, Serpell LC.

Acta Neuropathol Commun. 2018 Jul 31;6(1):70. doi: 10.1186/s40478-018-0565-6.


Team Red, White & Blue: a community-based model for harnessing positive social networks to enhance enrichment outcomes in military veterans reintegrating to civilian life.

Angel CM, Smith BP, Pinter JM, Young BB, Armstrong NJ, Quinn JP, Brostek DF, Goodrich DE, Hoerster KD, Erwin MS.

Transl Behav Med. 2018 Jul 17;8(4):554-564. doi: 10.1093/tbm/iby050.


Insights into the structural dynamics of the bacteriophage T7 DNA polymerase and its complexes.

Magill DJ, McGrath JW, O'Flaherty V, Quinn JP, Kulakov LA.

J Mol Model. 2018 Jun 1;24(7):144. doi: 10.1007/s00894-018-3671-2.


Distinct chromatin structures at the monoamine oxidase-A promoter correlate with allele-specific expression in SH-SY5Y cells.

Manca M, Pessoa V, Myers P, Pickles A, Hill J, Sharp H, Murgatroyd C, Bubb VJ, Quinn JP.

Genes Brain Behav. 2019 Jul;18(6):e12483. doi: 10.1111/gbb.12483. Epub 2018 May 11.


Tau Proteolysis in the Pathogenesis of Tauopathies: Neurotoxic Fragments and Novel Biomarkers.

Quinn JP, Corbett NJ, Kellett KAB, Hooper NM.

J Alzheimers Dis. 2018;63(1):13-33. doi: 10.3233/JAD-170959. Review.


The Regulation of Monoamine Oxidase A Gene Expression by Distinct Variable Number Tandem Repeats.

Manca M, Pessoa V, Lopez AI, Harrison PT, Miyajima F, Sharp H, Pickles A, Hill J, Murgatroyd C, Bubb VJ, Quinn JP.

J Mol Neurosci. 2018 Mar;64(3):459-470. doi: 10.1007/s12031-018-1044-z. Epub 2018 Mar 14.


Regulatory characterisation of the schizophrenia-associated CACNA1C proximal promoter and the potential role for the transcription factor EZH2 in schizophrenia aetiology.

Billingsley KJ, Manca M, Gianfrancesco O, Collier DA, Sharp H, Bubb VJ, Quinn JP.

Schizophr Res. 2018 Sep;199:168-175. doi: 10.1016/j.schres.2018.02.036. Epub 2018 Feb 28.


Statistical analysis of human microarray data shows that dietary intervention with n-3 fatty acids, flavonoids and resveratrol enriches for immune response and disease pathways.

Warburton A, Vasieva O, Quinn P, Stewart JP, Quinn JP.

Br J Nutr. 2018 Feb;119(3):239-249. doi: 10.1017/S0007114517003506. Epub 2018 Jan 18.


Phosphate insensitive aminophosphonate mineralisation within oceanic nutrient cycles.

Chin JP, Quinn JP, McGrath JW.

ISME J. 2018 Apr;12(4):973-980. doi: 10.1038/s41396-017-0031-7. Epub 2018 Jan 16.


Sarcoma family kinase activity is required for cortical spreading depression.

Bu F, Wang Y, Jiang L, Ma D, Quinn JP, Wang M.

Cephalalgia. 2018 Oct;38(11):1748-1758. doi: 10.1177/0333102417748572. Epub 2017 Dec 14.


Tau Diagnostics and Clinical Studies.

Gozes I, Höglinger G, Quinn JP, Hooper NM, Höglund K.

J Mol Neurosci. 2017 Oct;63(2):123-130. doi: 10.1007/s12031-017-0983-0.


Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages.

Magill DJ, Kucher PA, Krylov VN, Pleteneva EA, Quinn JP, Kulakov LA.

Sci Rep. 2017 Oct 23;7(1):13731. doi: 10.1038/s41598-017-14285-0.


Temporal dynamics of uncultured viruses: a new dimension in viral diversity.

Arkhipova K, Skvortsov T, Quinn JP, McGrath JW, Allen CC, Dutilh BE, McElarney Y, Kulakov LA.

ISME J. 2018 Jan;12(1):199-211. doi: 10.1038/ismej.2017.157. Epub 2017 Oct 13.


Pf16 and phiPMW: Expanding the realm of Pseudomonas putida bacteriophages.

Magill DJ, Krylov VN, Shaburova OV, McGrath JW, Allen CCR, Quinn JP, Kulakov LA.

PLoS One. 2017 Sep 6;12(9):e0184307. doi: 10.1371/journal.pone.0184307. eCollection 2017.


Novel brain expressed RNA identified at the MIR137 schizophrenia-associated locus.

Gianfrancesco O, Warburton A, Collier DA, Bubb VJ, Quinn JP.

Schizophr Res. 2017 Jun;184:109-115. doi: 10.1016/j.schres.2016.11.034. Epub 2016 Nov 29.


Postprandial sleep mechanics in Drosophila.

Murphy KR, Deshpande SA, Yurgel ME, Quinn JP, Weissbach JL, Keene AC, Dawson-Scully K, Huber R, Tomchik SM, Ja WW.

Elife. 2016 Nov 22;5. pii: e19334. doi: 10.7554/eLife.19334.


SVA retrotransposons as potential modulators of neuropeptide gene expression.

Gianfrancesco O, Bubb VJ, Quinn JP.

Neuropeptides. 2017 Aug;64:3-7. doi: 10.1016/j.npep.2016.09.006. Epub 2016 Oct 11. Review.


Hemokinin-1 mediates anxiolytic and anti-depressant-like actions in mice.

Borbély É, Hajna Z, Nabi L, Scheich B, Tékus V, László K, Ollmann T, Kormos V, Gaszner B, Karádi Z, Lénárd L, Paige CJ, Quinn JP, Szolcsányi J, Pintér E, Keeble J, Berger A, Helyes Z.

Brain Behav Immun. 2017 Jan;59:219-232. doi: 10.1016/j.bbi.2016.09.004. Epub 2016 Sep 9.


Identification and Potential Regulatory Properties of Evolutionary Conserved Regions (ECRs) at the Schizophrenia-Associated MIR137 Locus.

Gianfrancesco O, Griffiths D, Myers P, Collier DA, Bubb VJ, Quinn JP.

J Mol Neurosci. 2016 Oct;60(2):239-47. doi: 10.1007/s12031-016-0812-x. Epub 2016 Aug 15.


Role of capsaicin-sensitive nerves and tachykinins in mast cell tryptase-induced inflammation of murine knees.

Borbély É, Sándor K, Markovics A, Kemény Á, Pintér E, Szolcsányi J, Quinn JP, McDougall JJ, Helyes Z.

Inflamm Res. 2016 Sep;65(9):725-36. doi: 10.1007/s00011-016-0954-x. Epub 2016 Jun 1.


NR2A contributes to genesis and propagation of cortical spreading depression in rats.

Bu F, Du R, Li Y, Quinn JP, Wang M.

Sci Rep. 2016 Mar 22;6:23576. doi: 10.1038/srep23576.


Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland.

Skvortsov T, de Leeuwe C, Quinn JP, McGrath JW, Allen CC, McElarney Y, Watson C, Arkhipova K, Lavigne R, Kulakov LA.

PLoS One. 2016 Feb 29;11(2):e0150361. doi: 10.1371/journal.pone.0150361. eCollection 2016.


Microbial transformations in phosphonate biosynthesis and catabolism, and their importance in nutrient cycling.

Chin JP, McGrath JW, Quinn JP.

Curr Opin Chem Biol. 2016 Apr;31:50-7. doi: 10.1016/j.cbpa.2016.01.010. Epub 2016 Feb 4. Review.


A TOMM40 poly-T variant modulates gene expression and is associated with vocabulary ability and decline in nonpathologic aging.

Payton A, Sindrewicz P, Pessoa V, Platt H, Horan M, Ollier W, Bubb VJ, Pendleton N, Quinn JP.

Neurobiol Aging. 2016 Mar;39:217.e1-7. doi: 10.1016/j.neurobiolaging.2015.11.017. Epub 2015 Dec 8.


NRSF and BDNF polymorphisms as biomarkers of cognitive dysfunction in adults with newly diagnosed epilepsy.

Warburton A, Miyajima F, Shazadi K, Crossley J, Johnson MR, Marson AG, Baker GA, Quinn JP, Sills GJ.

Epilepsy Behav. 2016 Jan;54:117-27. doi: 10.1016/j.yebeh.2015.11.013. Epub 2015 Dec 17.


Regulation of SPRY3 by X chromosome and PAR2-linked promoters in an autism susceptibility region.

Ning Z, McLellan AS, Ball M, Wynne F, O'Neill C, Mills W, Quinn JP, Kleinjan DA, Anney RJ, Carmody RJ, O'Keeffe G, Moore T.

Hum Mol Genet. 2015 Dec 20;24(25):7450. doi: 10.1093/hmg/ddv448. Epub 2015 Nov 2. No abstract available.


Analysis of the effects of depression associated polymorphisms on the activity of the BICC1 promoter in amygdala neurones.

Davidson S, Shanley L, Cowie P, Lear M, McGuffin P, Quinn JP, Barrett P, MacKenzie A.

Pharmacogenomics J. 2016 Aug;16(4):366-74. doi: 10.1038/tpj.2015.62. Epub 2015 Oct 6.


A GWAS SNP for Schizophrenia Is Linked to the Internal MIR137 Promoter and Supports Differential Allele-Specific Expression.

Warburton A, Breen G, Bubb VJ, Quinn JP.

Schizophr Bull. 2016 Jul;42(4):1003-8. doi: 10.1093/schbul/sbv144. Epub 2015 Oct 1.


Gender and estrous cycle influences on behavioral and neurochemical alterations in adult rats neonatally administered ketamine.

Célia Moreira Borella V, Seeman MV, Carneiro Cordeiro R, Vieira dos Santos J, Romário Matos de Souza M, Nunes de Sousa Fernandes E, Santos Monte A, Maria Mendes Vasconcelos S, Quinn JP, de Lucena DF, Carvalho AF, Macêdo D.

Dev Neurobiol. 2016 May;76(5):519-32. doi: 10.1002/dneu.22329. Epub 2015 Aug 6.


Leisure Activity Enjoyment of Children with Autism Spectrum Disorders.

Eversole M, Collins DM, Karmarkar A, Colton L, Quinn JP, Karsbaek R, Johnson JR, Callier NP, Hilton CL.

J Autism Dev Disord. 2016 Jan;46(1):10-20. doi: 10.1007/s10803-015-2529-z.


21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometer: A National Resource for Ultrahigh Resolution Mass Analysis.

Hendrickson CL, Quinn JP, Kaiser NK, Smith DF, Blakney GT, Chen T, Marshall AG, Weisbrod CR, Beu SC.

J Am Soc Mass Spectrom. 2015 Sep;26(9):1626-32. doi: 10.1007/s13361-015-1182-2. Epub 2015 Jun 20.


Regulation of SPRY3 by X chromosome and PAR2-linked promoters in an autism susceptibility region.

Ning Z, McLellan AS, Ball M, Wynne F, O'Neill C, Mills W, Quinn JP, Kleinjan DA, Anney RJ, Carmody RJ, O'Keeffe G, Moore T.

Hum Mol Genet. 2015 Sep 15;24(18):5126-41. doi: 10.1093/hmg/ddv231. Epub 2015 Jun 18. Erratum in: Hum Mol Genet. 2015 Dec 20;24(25):7450.


Effects of prenatal and postnatal depression, and maternal stroking, at the glucocorticoid receptor gene.

Murgatroyd C, Quinn JP, Sharp HM, Pickles A, Hill J.

Transl Psychiatry. 2015 May 5;5:e560. doi: 10.1038/tp.2014.140.


Capillary-like network formation by human amniotic fluid-derived stem cells within fibrin/poly(ethylene glycol) hydrogels.

Benavides OM, Quinn JP, Pok S, Petsche Connell J, Ruano R, Jacot JG.

Tissue Eng Part A. 2015 Apr;21(7-8):1185-94. doi: 10.1089/ten.TEA.2014.0288. Epub 2015 Jan 28.


Is there a common water-activity limit for the three domains of life?

Stevenson A, Cray JA, Williams JP, Santos R, Sahay R, Neuenkirchen N, McClure CD, Grant IR, Houghton JD, Quinn JP, Timson DJ, Patil SV, Singhal RS, Antón J, Dijksterhuis J, Hocking AD, Lievens B, Rangel DE, Voytek MA, Gunde-Cimerman N, Oren A, Timmis KN, McGenity TJ, Hallsworth JE.

ISME J. 2015 Jun;9(6):1333-51. doi: 10.1038/ismej.2014.219. Epub 2014 Dec 12.


Molecular signatures of mood stabilisers highlight the role of the transcription factor REST/NRSF.

Warburton A, Savage AL, Myers P, Peeney D, Bubb VJ, Quinn JP.

J Affect Disord. 2015 Feb 1;172:63-73. doi: 10.1016/j.jad.2014.09.024. Epub 2014 Oct 7.


Characterisation of multiple regulatory domains spanning the major transcriptional start site of the FUS gene, a candidate gene for motor neurone disease.

Khursheed K, Wilm TP, Cashman C, Quinn JP, Bubb VJ, Moss DJ.

Brain Res. 2015 Jan 21;1595:1-9. doi: 10.1016/j.brainres.2014.10.056. Epub 2014 Nov 5.


Characterization of a REST-Regulated Internal Promoter in the Schizophrenia Genome-Wide Associated Gene MIR137.

Warburton A, Breen G, Rujescu D, Bubb VJ, Quinn JP.

Schizophr Bull. 2015 May;41(3):698-707. doi: 10.1093/schbul/sbu117. Epub 2014 Aug 25.


SVA retrotransposons as modulators of gene expression.

Quinn JP, Bubb VJ.

Mob Genet Elements. 2014 Jul 24;4:e32102. eCollection 2014.

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