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Items: 39

1.

Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology.

Flores-Ríos R, Quatrini R, Loyola A.

Comput Struct Biotechnol J. 2019 Jun 14;17:746-756. doi: 10.1016/j.csbj.2019.06.010. eCollection 2019. Review.

2.

Acidithiobacillus sulfuriphilus sp. nov.: an extremely acidophilic sulfur-oxidizing chemolithotroph isolated from a neutral pH environment.

Falagán C, Moya-Beltrán A, Castro M, Quatrini R, Johnson DB.

Int J Syst Evol Microbiol. 2019 Jul 5. doi: 10.1099/ijsem.0.003576. [Epub ahead of print]

PMID:
31274405
3.

Nucleotide Second Messenger-Based Signaling in Extreme Acidophiles of the Acidithiobacillus Species Complex: Partition Between the Core and Variable Gene Complements.

Moya-Beltrán A, Rojas-Villalobos C, Díaz M, Guiliani N, Quatrini R, Castro M.

Front Microbiol. 2019 Mar 7;10:381. doi: 10.3389/fmicb.2019.00381. eCollection 2019.

4.

The Type IV Secretion System of ICEAfe1: Formation of a Conjugative Pilus in Acidithiobacillus ferrooxidans.

Flores-Ríos R, Moya-Beltrán A, Pareja-Barrueto C, Arenas-Salinas M, Valenzuela S, Orellana O, Quatrini R.

Front Microbiol. 2019 Feb 5;10:30. doi: 10.3389/fmicb.2019.00030. eCollection 2019.

5.

Domestication of Local Microbial Consortia for Efficient Recovery of Gold Through Top-Down Selection in Airlift Bioreactors.

Ulloa R, Moya-Beltrán A, Rojas-Villalobos C, Nuñez H, Chiacchiarini P, Donati E, Giaveno A, Quatrini R.

Front Microbiol. 2019 Jan 30;10:60. doi: 10.3389/fmicb.2019.00060. eCollection 2019.

6.

Acidithiobacillus ferrooxidans.

Quatrini R, Johnson DB.

Trends Microbiol. 2019 Mar;27(3):282-283. doi: 10.1016/j.tim.2018.11.009. Epub 2018 Dec 15.

PMID:
30563727
7.

Insights into the biology of acidophilic members of the Acidiferrobacteraceae family derived from comparative genomic analyses.

Issotta F, Moya-Beltrán A, Mena C, Covarrubias PC, Thyssen C, Bellenberg S, Sand W, Quatrini R, Vera M.

Res Microbiol. 2018 Dec;169(10):608-617. doi: 10.1016/j.resmic.2018.08.001. Epub 2018 Aug 22.

8.

Occurrence, integrity and functionality of AcaML1-like viruses infecting extreme acidophiles of the Acidithiobacillus species complex.

Covarrubias PC, Moya-Beltrán A, Atavales J, Moya-Flores F, Tapia PS, Acuña LG, Spinelli S, Quatrini R.

Res Microbiol. 2018 Dec;169(10):628-637. doi: 10.1016/j.resmic.2018.07.005. Epub 2018 Aug 20.

9.

Microbiomes in extremely acidic environments: functionalities and interactions that allow survival and growth of prokaryotes at low pH.

Quatrini R, Johnson DB.

Curr Opin Microbiol. 2018 Jun;43:139-147. doi: 10.1016/j.mib.2018.01.011. Epub 2018 Feb 6. Review.

10.

Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.

Quatrini R, Escudero LV, Moya-Beltrán A, Galleguillos PA, Issotta F, Acosta M, Cárdenas JP, Nuñez H, Salinas K, Holmes DS, Demergasso C.

Stand Genomic Sci. 2017 Dec 19;12:84. doi: 10.1186/s40793-017-0305-8. eCollection 2017.

11.

Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366).

Castro M, Moya-Beltrán A, Covarrubias PC, Gonzalez M, Cardenas JP, Issotta F, Nuñez H, Acuña LG, Encina G, Holmes DS, Johnson DB, Quatrini R.

Stand Genomic Sci. 2017 Dec 15;12:77. doi: 10.1186/s40793-017-0282-y. eCollection 2017.

12.

A DNA segment encoding the anticodon stem/loop of tRNA determines the specific recombination of integrative-conjugative elements in Acidithiobacillus species.

Castillo A, Tello M, Ringwald K, Acuña LG, Quatrini R, Orellana O.

RNA Biol. 2018;15(4-5):492-499. doi: 10.1080/15476286.2017.1408765. Epub 2017 Dec 20.

13.

Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance.

Castro-Severyn J, Remonsellez F, Valenzuela SL, Salinas C, Fortt J, Aguilar P, Pardo-Esté C, Dorador C, Quatrini R, Molina F, Aguayo D, Castro-Nallar E, Saavedra CP.

Front Microbiol. 2017 Mar 21;8:456. doi: 10.3389/fmicb.2017.00456. eCollection 2017.

14.

Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon.

Nuñez H, Moya-Beltrán A, Covarrubias PC, Issotta F, Cárdenas JP, González M, Atavales J, Acuña LG, Johnson DB, Quatrini R.

Front Microbiol. 2017 Jan 19;8:30. doi: 10.3389/fmicb.2017.00030. eCollection 2017.

15.

Mutantelec: An In Silico mutation simulation platform for comparative electrostatic potential profiling of proteins.

Valdebenito-Maturana B, Reyes-Suarez JA, Henriquez J, Holmes DS, Quatrini R, Pohl E, Arenas-Salinas M.

J Comput Chem. 2017 Mar 15;38(7):467-474. doi: 10.1002/jcc.24712.

PMID:
28114729
16.
17.

Genomic and metagenomic challenges and opportunities for bioleaching: a mini-review.

Cárdenas JP, Quatrini R, Holmes DS.

Res Microbiol. 2016 Sep;167(7):529-38. doi: 10.1016/j.resmic.2016.06.007. Epub 2016 Jul 7. Review.

18.

Detection, identification and typing of Acidithiobacillus species and strains: a review.

Nuñez H, Covarrubias PC, Moya-Beltrán A, Issotta F, Atavales J, Acuña LG, Johnson DB, Quatrini R.

Res Microbiol. 2016 Sep;167(7):555-67. doi: 10.1016/j.resmic.2016.05.006. Epub 2016 Jun 8. Review.

PMID:
27288569
19.

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile.

Issotta F, Galleguillos PA, Moya-Beltrán A, Davis-Belmar CS, Rautenbach G, Covarrubias PC, Acosta M, Ossandon FJ, Contador Y, Holmes DS, Marín-Eliantonio S, Quatrini R, Demergasso C.

Stand Genomic Sci. 2016 Feb 27;11:19. doi: 10.1186/s40793-016-0142-1. eCollection 2016.

20.

Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130.

Ossandon FJ, Cárdenas JP, Corbett M, Quatrini R, Holmes DS, Watkin E.

Genome Announc. 2014 Oct 23;2(5). pii: e01042-14. doi: 10.1128/genomeA.01042-14.

21.

Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation.

Nuñez H, Loyola D, Cárdenas JP, Holmes DS, Johnson DB, Quatrini R.

Res Microbiol. 2014 Nov;165(9):735-42. doi: 10.1016/j.resmic.2014.07.014. Epub 2014 Aug 29.

22.

Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis.

González C, Yanquepe M, Cardenas JP, Valdes J, Quatrini R, Holmes DS, Dopson M.

Res Microbiol. 2014 Nov;165(9):726-34. doi: 10.1016/j.resmic.2014.08.005. Epub 2014 Aug 27.

PMID:
25172573
23.

Draft Genome Sequence of the Nominated Type Strain of "Ferrovum myxofaciens," an Acidophilic, Iron-Oxidizing Betaproteobacterium.

Moya-Beltrán A, Cárdenas JP, Covarrubias PC, Issotta F, Ossandon FJ, Grail BM, Holmes DS, Quatrini R, Johnson DB.

Genome Announc. 2014 Aug 21;2(4). pii: e00834-14. doi: 10.1128/genomeA.00834-14.

24.

AFAL: a web service for profiling amino acids surrounding ligands in proteins.

Arenas-Salinas M, Ortega-Salazar S, Gonzales-Nilo F, Pohl E, Holmes DS, Quatrini R.

J Comput Aided Mol Des. 2014 Nov;28(11):1069-76. doi: 10.1007/s10822-014-9783-6. Epub 2014 Aug 2.

25.

DNA, cell wall and general oxidative damage underlie the tellurite/cefotaxime synergistic effect in Escherichia coli.

Molina-Quiroz RC, Loyola DE, Muñoz-Villagrán CM, Quatrini R, Vásquez CC, Pérez-Donoso JM.

PLoS One. 2013 Nov 18;8(11):e79499. doi: 10.1371/journal.pone.0079499. eCollection 2013.

26.

Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus.

Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R.

PLoS One. 2013 Nov 8;8(11):e78237. doi: 10.1371/journal.pone.0078237. eCollection 2013. Erratum in: PLoS One. 2015;10(3):e0122682.

27.

ICE Afe 1, an actively excising genetic element from the biomining bacterium Acidithiobacillus ferrooxidans.

Bustamante P, Covarrubias PC, Levicán G, Katz A, Tapia P, Holmes D, Quatrini R, Orellana O.

J Mol Microbiol Biotechnol. 2012;22(6):399-407. doi: 10.1159/000346669. Epub 2013 Mar 7.

28.

Complete genome sequence of temperate bacteriophage AcaML1 from the extreme acidophile Acidithiobacillus caldus ATCC 51756.

Tapia P, Flores FM, Covarrubias PC, Acuña LG, Holmes DS, Quatrini R.

J Virol. 2012 Nov;86(22):12452-3. doi: 10.1128/JVI.02261-12.

29.

Thiol/Disulfide system plays a crucial role in redox protection in the acidophilic iron-oxidizing bacterium Leptospirillum ferriphilum.

Norambuena J, Flores R, Cárdenas JP, Quatrini R, Chávez R, Levicán G.

PLoS One. 2012;7(9):e44576. doi: 10.1371/journal.pone.0044576. Epub 2012 Sep 6.

30.
31.

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms.

Cárdenas JP, Valdés J, Quatrini R, Duarte F, Holmes DS.

Appl Microbiol Biotechnol. 2010 Oct;88(3):605-20. doi: 10.1007/s00253-010-2795-9. Epub 2010 Aug 10. Review.

PMID:
20697707
32.

Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidans.

Quatrini R, Appia-Ayme C, Denis Y, Jedlicki E, Holmes DS, Bonnefoy V.

BMC Genomics. 2009 Aug 24;10:394. doi: 10.1186/1471-2164-10-394.

33.

Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus.

Valdes J, Quatrini R, Hallberg K, Dopson M, Valenzuela PD, Holmes DS.

J Bacteriol. 2009 Sep;191(18):5877-8. doi: 10.1128/JB.00843-09. Epub 2009 Jul 17.

34.

Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidans.

Nieto PA, Covarrubias PC, Jedlicki E, Holmes DS, Quatrini R.

BMC Mol Biol. 2009 Jun 25;10:63. doi: 10.1186/1471-2199-10-63.

35.

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.

Valdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R 2nd, Eisen JA, Holmes DS.

BMC Genomics. 2008 Dec 11;9:597. doi: 10.1186/1471-2164-9-597.

36.

Microbial iron management mechanisms in extremely acidic environments: comparative genomics evidence for diversity and versatility.

Osorio H, Martínez V, Nieto PA, Holmes DS, Quatrini R.

BMC Microbiol. 2008 Nov 24;8:203. doi: 10.1186/1471-2180-8-203.

37.

Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.

Quatrini R, Lefimil C, Veloso FA, Pedroso I, Holmes DS, Jedlicki E.

Nucleic Acids Res. 2007;35(7):2153-66. Epub 2007 Mar 13.

38.

The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans.

Quatrini R, Lefimil C, Holmes DS, Jedlicki E.

Microbiology. 2005 Jun;151(Pt 6):2005-15.

PMID:
15942007
39.

Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans.

Quatrini R, Jedlicki E, Holmes DS.

J Ind Microbiol Biotechnol. 2005 Dec;32(11-12):606-14. Epub 2005 May 14. Review.

PMID:
15895264

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