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Items: 1 to 50 of 130

1.

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.

Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA.

Plant J. 2018 Jul;95(1):168-182. doi: 10.1111/tpj.13940. Epub 2018 Jun 7.

PMID:
29681058
2.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

PMID:
29237241
3.

Large-scale proteome analysis of abscisic acid and ABSCISIC ACID INSENSITIVE3-dependent proteins related to desiccation tolerance in Physcomitrella patens.

Yotsui I, Serada S, Naka T, Saruhashi M, Taji T, Hayashi T, Quatrano RS, Sakata Y.

Biochem Biophys Res Commun. 2016 Mar 18;471(4):589-95. doi: 10.1016/j.bbrc.2016.02.024. Epub 2016 Feb 8.

PMID:
26869511
4.

Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response.

Plavskin Y, Nagashima A, Perroud PF, Hasebe M, Quatrano RS, Atwal GS, Timmermans MC.

Dev Cell. 2016 Feb 8;36(3):276-89. doi: 10.1016/j.devcel.2016.01.010.

5.

Phospho-proteomic analysis of developmental reprogramming in the moss Physcomitrella patens.

Wang X, Zhou S, Chen L, Quatrano RS, He Y.

J Proteomics. 2014 Aug 28;108:284-94. doi: 10.1016/j.jprot.2014.05.012. Epub 2014 Jun 16.

PMID:
24933006
6.

De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome.

Szövényi P, Perroud PF, Symeonidi A, Stevenson S, Quatrano RS, Rensing SA, Cuming AC, McDaniel SF.

Mol Ecol Resour. 2015 Jan;15(1):203-15. doi: 10.1111/1755-0998.12284. Epub 2014 Jun 13.

PMID:
24862584
7.

Defective Kernel 1 (DEK1) is required for three-dimensional growth in Physcomitrella patens.

Perroud PF, Demko V, Johansen W, Wilson RC, Olsen OA, Quatrano RS.

New Phytol. 2014 Aug;203(3):794-804. doi: 10.1111/nph.12844. Epub 2014 May 21.

8.

Prenylation is required for polar cell elongation, cell adhesion, and differentiation in Physcomitrella patens.

Thole JM, Perroud PF, Quatrano RS, Running MP.

Plant J. 2014 May;78(3):441-51. doi: 10.1111/tpj.12484. Epub 2014 Apr 7.

9.

Recent gene-capture on the UV sex chromosomes of the moss Ceratodon purpureus.

McDaniel SF, Neubig KM, Payton AC, Quatrano RS, Cove DJ.

Evolution. 2013 Oct;67(10):2811-22. doi: 10.1111/evo.12165. Epub 2013 Jun 7.

10.

Identification and functional characterization of two Δ12-fatty acid desaturases associated with essential linoleic acid biosynthesis in Physcomitrella patens.

Chodok P, Eiamsa-ard P, Cove DJ, Quatrano RS, Kaewsuwan S.

J Ind Microbiol Biotechnol. 2013 Aug;40(8):901-13. doi: 10.1007/s10295-013-1285-3. Epub 2013 May 24.

PMID:
23702573
11.

ABSCISIC ACID INSENSITIVE3 regulates abscisic acid-responsive gene expression with the nuclear factor Y complex through the ACTT-core element in Physcomitrella patens.

Yotsui I, Saruhashi M, Kawato T, Taji T, Hayashi T, Quatrano RS, Sakata Y.

New Phytol. 2013 Jul;199(1):101-9. doi: 10.1111/nph.12251. Epub 2013 Apr 4.

12.

Estimating the nucleotide diversity in Ceratodon purpureus (Ditrichaceae) from 218 conserved exon-primed, intron-spanning nuclear loci.

McDaniel SF, van Baren MJ, Jones KS, Payton AC, Quatrano RS.

Appl Plant Sci. 2013 Mar 28;1(4). pii: apps.1200387. doi: 10.3732/apps.1200387. eCollection 2013 Apr.

13.

Myosin VIII regulates protonemal patterning and developmental timing in the moss Physcomitrella patens.

Wu SZ, Ritchie JA, Pan AH, Quatrano RS, Bezanilla M.

Mol Plant. 2011 Sep;4(5):909-21. doi: 10.1093/mp/ssr068. Epub 2011 Aug 25.

14.

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines.

Perroud PF, Cove DJ, Quatrano RS, McDaniel SF.

New Phytol. 2011 Jul;191(1):301-6. doi: 10.1111/j.1469-8137.2011.03668.x. Epub 2011 Mar 2.

15.

Protection of Telomeres 1 is required for telomere integrity in the moss Physcomitrella patens.

Shakirov EV, Perroud PF, Nelson AD, Cannell ME, Quatrano RS, Shippen DE.

Plant Cell. 2010 Jun;22(6):1838-48. doi: 10.1105/tpc.110.075846. Epub 2010 Jun 1.

16.

Regulation of the ABA-responsive Em promoter by ABI3 in the moss Physcomitrella patens: role of the ABA response element and the RY element.

Sakata Y, Nakamura I, Taji T, Tanaka S, Quatrano RS.

Plant Signal Behav. 2010 Sep;5(9):1061-6. Epub 2010 Sep 1.

17.

Isolation of DNA, RNA, and protein from the moss Physcomitrella patens gametophytes.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5146. doi: 10.1101/pdb.prot5146. No abstract available.

PMID:
20147076
18.

Transformation of moss Physcomitrella patens gametophytes using a biolistic projectile delivery system.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5145. doi: 10.1101/pdb.prot5145. No abstract available.

PMID:
20147075
19.

Transformation of the moss Physcomitrella patens using T-DNA mutagenesis.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5144. doi: 10.1101/pdb.prot5144. No abstract available.

PMID:
20147074
20.

Transformation of the moss Physcomitrella patens using direct DNA uptake by protoplasts.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5143. doi: 10.1101/pdb.prot5143. No abstract available.

PMID:
20147073
21.

Chemical and UV mutagenesis of spores and protonemal tissue from the moss Physcomitrella patens.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5142. doi: 10.1101/pdb.prot5142. No abstract available.

PMID:
20147072
22.

Somatic hybridization in the moss Physcomitrella patens using PEG-induced protoplast fusion.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5141. doi: 10.1101/pdb.prot5141. No abstract available.

PMID:
20147071
23.

Isolation and regeneration of protoplasts of the moss Physcomitrella patens.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5140. doi: 10.1101/pdb.prot5140. No abstract available.

PMID:
20147070
24.

Culturing the moss Physcomitrella patens.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5136. doi: 10.1101/pdb.prot5136. No abstract available.

PMID:
20147066
25.

The moss Physcomitrella patens: a novel model system for plant development and genomic studies.

Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS.

Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.emo115. doi: 10.1101/pdb.emo115. No abstract available.

PMID:
20147063
26.

Role of ABA and ABI3 in desiccation tolerance.

Khandelwal A, Cho SH, Marella H, Sakata Y, Perroud PF, Pan A, Quatrano RS.

Science. 2010 Jan 29;327(5965):546. doi: 10.1126/science.1183672.

27.

High level production of adrenic acid in Physcomitrella patens using the algae Pavlova sp. Delta(5)-elongase gene.

Kaewsuwan S, Bunyapraphatsara N, Cove DJ, Quatrano RS, Chodok P.

Bioresour Technol. 2010 Jun;101(11):4081-8. doi: 10.1016/j.biortech.2009.12.138. Epub 2010 Jan 27.

PMID:
20106658
28.

Between a rock and a dry place: the water-stressed moss.

Charron AJ, Quatrano RS.

Mol Plant. 2009 May;2(3):478-86. doi: 10.1093/mp/ssp018. Epub 2009 Mar 31.

29.

An actinoporin plays a key role in water stress in the moss Physcomitrella patens.

Hoang QT, Cho SH, McDaniel SF, Ok SH, Quatrano RS, Shin JS.

New Phytol. 2009 Oct;184(2):502-10. doi: 10.1111/j.1469-8137.2009.02975.x. Epub 2009 Aug 11.

30.

The speciation history of the Physcomitrium--Physcomitrella species complex.

McDaniel SF, von Stackelberg M, Richardt S, Quatrano RS, Reski R, Rensing SA.

Evolution. 2010 Jan;64(1):217-31. doi: 10.1111/j.1558-5646.2009.00797.x. Epub 2009 Jul 30.

PMID:
19659592
31.

Functional analyses of the ABI1-related protein phosphatase type 2C reveal evolutionarily conserved regulation of abscisic acid signaling between Arabidopsis and the moss Physcomitrella patens.

Komatsu K, Nishikawa Y, Ohtsuka T, Taji T, Quatrano RS, Tanaka S, Sakata Y.

Plant Mol Biol. 2009 Jun;70(3):327-40. doi: 10.1007/s11103-009-9476-z. Epub 2009 Mar 6.

PMID:
19266168
32.

Arabidopsis transcriptome reveals control circuits regulating redox homeostasis and the role of an AP2 transcription factor.

Khandelwal A, Elvitigala T, Ghosh B, Quatrano RS.

Plant Physiol. 2008 Dec;148(4):2050-8. doi: 10.1104/pp.108.128488. Epub 2008 Oct 1.

33.

BRICK1 is required for apical cell growth in filaments of the moss Physcomitrella patens but not for gametophore morphology.

Perroud PF, Quatrano RS.

Plant Cell. 2008 Feb;20(2):411-22. doi: 10.1105/tpc.107.053256. Epub 2008 Feb 8.

34.

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.

Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL.

Science. 2008 Jan 4;319(5859):64-9. Epub 2007 Dec 13.

35.

14-3-3 Proteins are components of the transcription complex of the ATEM1 promoter in Arabidopsis.

del Viso F, Casaretto JA, Quatrano RS.

Planta. 2007 Dec;227(1):167-75. Epub 2007 Aug 16.

PMID:
17701425
36.

Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss, Physcomitrella patens.

Cuming AC, Cho SH, Kamisugi Y, Graham H, Quatrano RS.

New Phytol. 2007;176(2):275-87. Epub 2007 Aug 13.

37.

Moonlighting activity of presenilin in plants is independent of gamma-secretase and evolutionarily conserved.

Khandelwal A, Chandu D, Roe CM, Kopan R, Quatrano RS.

Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13337-42. Epub 2007 Aug 7.

38.

Physcomitrella patens: mosses enter the genomic age.

Quatrano RS, McDaniel SF, Khandelwal A, Perroud PF, Cove DJ.

Curr Opin Plant Biol. 2007 Apr;10(2):182-9. Epub 2007 Feb 8. Review.

PMID:
17291824
39.

14-3-3 adaptor proteins are intermediates in ABA signal transduction during barley seed germination.

Schoonheim PJ, Sinnige MP, Casaretto JA, Veiga H, Bunney TD, Quatrano RS, de Boer AH.

Plant J. 2007 Jan;49(2):289-301.

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43.

Identification and functional characterization of the moss Physcomitrella patens delta5-desaturase gene involved in arachidonic and eicosapentaenoic acid biosynthesis.

Kaewsuwan S, Cahoon EB, Perroud PF, Wiwat C, Panvisavas N, Quatrano RS, Cove DJ, Bunyapraphatsara N.

J Biol Chem. 2006 Aug 4;281(31):21988-97. Epub 2006 May 25.

44.

Use of bacterial quorum-sensing components to regulate gene expression in plants.

You YS, Marella H, Zentella R, Zhou Y, Ulmasov T, Ho TH, Quatrano RS.

Plant Physiol. 2006 Apr;140(4):1205-12.

45.

The role of ARPC4 in tip growth and alignment of the polar axis in filaments of Physcomitrella patens.

Perroud PF, Quatrano RS.

Cell Motil Cytoskeleton. 2006 Mar;63(3):162-71.

PMID:
16450411
46.

Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patens.

Lee KJ, Sakata Y, Mau SL, Pettolino F, Bacic A, Quatrano RS, Knight CD, Knox JP.

Plant Cell. 2005 Nov;17(11):3051-65. Epub 2005 Sep 30.

47.
48.

An RNAi system in Physcomitrella patens with an internal marker for silencing allows for rapid identification of loss of function phenotypes.

Bezanilla M, Perroud PF, Pan A, Klueh P, Quatrano RS.

Plant Biol (Stuttg). 2005 May;7(3):251-7.

PMID:
15912444
49.

Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana.

Zhang W, Ruan J, Ho TH, You Y, Yu T, Quatrano RS.

Bioinformatics. 2005 Jul 15;21(14):3074-81. Epub 2005 May 12.

PMID:
15890746
50.

Localization to the rhizoid tip implicates a Fucus distichus Rho family GTPase in a conserved cell polarity pathway.

Fowler JE, Vejlupkova Z, Goodner BW, Lu G, Quatrano RS.

Planta. 2004 Sep;219(5):856-66. Epub 2004 Jun 10.

PMID:
15197592

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