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Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection.

Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A.

Sci Rep. 2019 Jan 18;9(1):213. doi: 10.1038/s41598-018-36135-3.


Ribonuclease inhibitor 1 regulates erythropoiesis by controlling GATA1 translation.

Chennupati V, Veiga DF, Maslowski KM, Andina N, Tardivel A, Yu EC, Stilinovic M, Simillion C, Duchosal MA, Quadroni M, Roberts I, Sankaran VG, MacDonald HR, Fasel N, Angelillo-Scherrer A, Schneider P, Hoang T, Allam R.

J Clin Invest. 2018 Apr 2;128(4):1597-1614. doi: 10.1172/JCI94956. Epub 2018 Mar 19.


Fine-Tuning of Optimal TCR Signaling in Tumor-Redirected CD8 T Cells by Distinct TCR Affinity-Mediated Mechanisms.

Presotto D, Erdes E, Duong MN, Allard M, Regamey PO, Quadroni M, Doucey MA, Rufer N, Hebeisen M.

Front Immunol. 2017 Nov 15;8:1564. doi: 10.3389/fimmu.2017.01564. eCollection 2017.


Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins.

Debelyy MO, Waridel P, Quadroni M, Schneiter R, Conzelmann A.

PLoS One. 2017 Oct 26;12(10):e0186840. doi: 10.1371/journal.pone.0186840. eCollection 2017.


Proteomic interrogation of HSP90 and insights for medical research.

Weidenauer L, Wang T, Joshi S, Chiosis G, Quadroni MR.

Expert Rev Proteomics. 2017 Dec;14(12):1105-1117. doi: 10.1080/14789450.2017.1389649. Epub 2017 Oct 16. Review.


MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications.

Martín-Campos T, Mylonas R, Masselot A, Waridel P, Petricevic T, Xenarios I, Quadroni M.

J Proteome Res. 2017 Aug 4;16(8):3092-3101. doi: 10.1021/acs.jproteome.7b00194. Epub 2017 Jul 6.


Corrigendum: Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery.

Fumagalli F, Noack J, Bergmann TJ, Cebollero E, Pisoni GB, Fasana E, Fregno I, Galli C, Loi M, Soldà T, D'Antuono R, Raimondi A, Jung M, Melnyk A, Schorr S, Schreiber A, Simonelli L, Varani L, Wilson-Zbinden C, Zerbe O, Hofmann K, Peter M, Quadroni M, Zimmermann R, Molinari M.

Nat Cell Biol. 2016 Dec 23;19(1):76. doi: 10.1038/ncb3451. No abstract available.


Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.

Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Dulić V, Naef F, Gachon F.

Cell Metab. 2017 Jan 10;25(1):102-117. doi: 10.1016/j.cmet.2016.10.003. Epub 2016 Nov 3.


Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery.

Fumagalli F, Noack J, Bergmann TJ, Cebollero E, Pisoni GB, Fasana E, Fregno I, Galli C, Loi M, Soldà T, D'Antuono R, Raimondi A, Jung M, Melnyk A, Schorr S, Schreiber A, Simonelli L, Varani L, Wilson-Zbinden C, Zerbe O, Hofmann K, Peter M, Quadroni M, Zimmermann R, Molinari M.

Nat Cell Biol. 2016 Nov;18(11):1173-1184. doi: 10.1038/ncb3423. Epub 2016 Oct 17. Erratum in: Nat Cell Biol. 2016 Dec 23;19(1):76.


Caspase-mediated cleavage of raptor participates in the inactivation of mTORC1 during cell death.

Martin R, Desponds C, Eren RO, Quadroni M, Thome M, Fasel N.

Cell Death Discov. 2016 Apr 18;2:16024. doi: 10.1038/cddiscovery.2016.24. eCollection 2016.


Quantitative proteomics of rat livers shows that unrestricted feeding is stressful for proteostasis with implications on life span.

Gat-Yablonski G, Finka A, Pinto G, Quadroni M, Shtaif B, Goloubinoff P.

Aging (Albany NY). 2016 Aug;8(8):1735-58. doi: 10.18632/aging.101009.


Identification of Antigenic Proteins from Lichtheimia corymbifera for Farmer's Lung Disease Diagnosis.

Rognon B, Barrera C, Monod M, Valot B, Roussel S, Quadroni M, Jouneau S, Court-Fortune I, Caillaud D, Fellrath JM, Dalphin JC, Reboux G, Millon L.

PLoS One. 2016 Aug 4;11(8):e0160888. doi: 10.1371/journal.pone.0160888. eCollection 2016.


AIM2 inflammasome is activated by pharmacological disruption of nuclear envelope integrity.

Di Micco A, Frera G, Lugrin J, Jamilloux Y, Hsu ET, Tardivel A, De Gassart A, Zaffalon L, Bujisic B, Siegert S, Quadroni M, Broz P, Henry T, Hrycyna CA, Martinon F.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):E4671-80. doi: 10.1073/pnas.1602419113. Epub 2016 Jul 26.


Proteome-Wide Effect of 17-β-Estradiol and Lipoxin A4 in an Endometriotic Epithelial Cell Line.

Sobel JA, Waridel P, Gori I, Quadroni M, Canny GO.

Front Endocrinol (Lausanne). 2016 Jan 6;6:192. doi: 10.3389/fendo.2015.00192. eCollection 2015.


Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs.

Finka A, Sood V, Quadroni M, Rios Pde L, Goloubinoff P.

Cell Stress Chaperones. 2015 Jul;20(4):605-20. doi: 10.1007/s12192-015-0583-2. Epub 2015 Apr 8.


Hsp90 inhibition induces both protein-specific and global changes in the ubiquitinome.

Quadroni M, Potts A, Waridel P.

J Proteomics. 2015 Apr 29;120:215-29. doi: 10.1016/j.jprot.2015.02.020. Epub 2015 Mar 14.


Immunoreactive proteins of Saccharopolyspora rectivirgula for farmer's lung serodiagnosis.

Barrera C, Millon L, Rognon B, Quadroni M, Roussel S, Dalphin JC, Court-Fortune I, Caillaud D, Jouneau S, Fellrath JM, Zaugg C, Reboux G, Monod M.

Proteomics Clin Appl. 2014 Dec;8(11-12):971-81. doi: 10.1002/prca.201400024. Epub 2014 Nov 4.


Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver.

Mauvoisin D, Wang J, Jouffe C, Martin E, Atger F, Waridel P, Quadroni M, Gachon F, Naef F.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):167-72. doi: 10.1073/pnas.1314066111. Epub 2013 Dec 16.


Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy.

Fierro-Monti I, Echeverria P, Racle J, Hernandez C, Picard D, Quadroni M.

PLoS One. 2013 Nov 27;8(11):e80425. doi: 10.1371/journal.pone.0080425. eCollection 2013.


A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor.

Fierro-Monti I, Racle J, Hernandez C, Waridel P, Hatzimanikatis V, Quadroni M.

PLoS One. 2013 Nov 27;8(11):e80423. doi: 10.1371/journal.pone.0080423. eCollection 2013.


Database construction and peptide identification strategies for proteogenomic studies on sequenced genomes.

Hernandez C, Waridel P, Quadroni M.

Curr Top Med Chem. 2014;14(3):425-34. Review.


Quantitative proteomics identifies the membrane-associated peroxidase GPx8 as a cellular substrate of the hepatitis C virus NS3-4A protease.

Morikawa K, Gouttenoire J, Hernandez C, Dao Thi VL, Tran HT, Lange CM, Dill MT, Heim MH, Donzé O, Penin F, Quadroni M, Moradpour D.

Hepatology. 2014 Feb;59(2):423-33. doi: 10.1002/hep.26671. Epub 2013 Dec 18.


Proteomic and transcriptomic profiling of Staphylococcus aureus surface LPXTG-proteins: correlation with agr genotypes and adherence phenotypes.

Ythier M, Resch G, Waridel P, Panchaud A, Gfeller A, Majcherczyk P, Quadroni M, Moreillon P.

Mol Cell Proteomics. 2012 Nov;11(11):1123-39. doi: 10.1074/mcp.M111.014191. Epub 2012 Jul 25.


Aspergillus species recombinant antigens for serodiagnosis of farmer's lung disease.

Millon L, Roussel S, Rognon B, Quadroni M, Salamin K, Reboux G, Barrera C, Fellrath JM, Aubert JD, Dalphin JC, Monod M.

J Allergy Clin Immunol. 2012 Sep;130(3):803-805.e6. doi: 10.1016/j.jaci.2012.03.039. Epub 2012 May 16. No abstract available.


Inflammasome activators induce interleukin-1α secretion via distinct pathways with differential requirement for the protease function of caspase-1.

Gross O, Yazdi AS, Thomas CJ, Masin M, Heinz LX, Guarda G, Quadroni M, Drexler SK, Tschopp J.

Immunity. 2012 Mar 23;36(3):388-400. doi: 10.1016/j.immuni.2012.01.018.


RAE-1, a novel PHR binding protein, is required for axon termination and synapse formation in Caenorhabditis elegans.

Grill B, Chen L, Tulgren ED, Baker ST, Bienvenut W, Anderson M, Quadroni M, Jin Y, Garner CC.

J Neurosci. 2012 Feb 22;32(8):2628-36. doi: 10.1523/JNEUROSCI.2901-11.2012.


Evidence for a new post-translational modification in Staphylococcus aureus: hydroxymethylation of asparagine and glutamine.

Waridel P, Ythier M, Gfeller A, Moreillon P, Quadroni M.

J Proteomics. 2012 Mar 16;75(6):1742-51. doi: 10.1016/j.jprot.2011.12.014. Epub 2011 Dec 20.


The death domain-containing protein Unc5CL is a novel MyD88-independent activator of the pro-inflammatory IRAK signaling cascade.

Heinz LX, Rebsamen M, Rossi DC, Staehli F, Schroder K, Quadroni M, Gross O, Schneider P, Tschopp J.

Cell Death Differ. 2012 Apr;19(4):722-31. doi: 10.1038/cdd.2011.147. Epub 2011 Dec 9.


Identification of novel secreted proteases during extracellular proteolysis by dermatophytes at acidic pH.

Sriranganadane D, Waridel P, Salamin K, Feuermann M, Mignon B, Staib P, Neuhaus JM, Quadroni M, Monod M.

Proteomics. 2011 Nov;11(22):4422-33. doi: 10.1002/pmic.201100234. Epub 2011 Oct 17.


Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma.

Valsesia A, Rimoldi D, Martinet D, Ibberson M, Benaglio P, Quadroni M, Waridel P, Gaillard M, Pidoux M, Rapin B, Rivolta C, Xenarios I, Simpson AJ, Antonarakis SE, Beckmann JS, Jongeneel CV, Iseli C, Stevenson BJ.

PLoS One. 2011 Apr 8;6(4):e18369. doi: 10.1371/journal.pone.0018369.


PIDD orchestrates translesion DNA synthesis in response to UV irradiation.

Logette E, Schuepbach-Mallepell S, Eckert MJ, Leo XH, Jaccard B, Manzl C, Tardivel A, Villunger A, Quadroni M, Gaide O, Tschopp J.

Cell Death Differ. 2011 Jun;18(6):1036-45. doi: 10.1038/cdd.2011.19. Epub 2011 Mar 18.


Secreted glutamic protease rescues aspartic protease Pep deficiency in Aspergillus fumigatus during growth in acidic protein medium.

Sriranganadane D, Reichard U, Salamin K, Fratti M, Jousson O, Waridel P, Quadroni M, Neuhaus JM, Monod M.

Microbiology. 2011 May;157(Pt 5):1541-1550. doi: 10.1099/mic.0.048603-0. Epub 2011 Feb 24.


Addressing trypsin bias in large scale (phospho)proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides.

Tran BQ, Hernandez C, Waridel P, Potts A, Barblan J, Lisacek F, Quadroni M.

J Proteome Res. 2011 Feb 4;10(2):800-11. doi: 10.1021/pr100951t. Epub 2010 Dec 20.


Regulation of PIDD auto-proteolysis and activity by the molecular chaperone Hsp90.

Tinel A, Eckert MJ, Logette E, Lippens S, Janssens S, Jaccard B, Quadroni M, Tschopp J.

Cell Death Differ. 2011 Mar;18(3):506-15. doi: 10.1038/cdd.2010.124. Epub 2010 Oct 22.


Immuno-reactive proteins from Mycobacterium immunogenum useful for serodiagnosis of metalworking fluid hypersensitivity pneumonitis.

Roussel S, Rognon B, Barrera C, Reboux G, Salamin K, Grenouillet F, Thaon I, Dalphin JC, Tillie-Leblond I, Quadroni M, Monod M, Millon L.

Int J Med Microbiol. 2011 Feb;301(2):150-6. doi: 10.1016/j.ijmm.2010.07.002. Epub 2010 Sep 17.


Aspergillus protein degradation pathways with different secreted protease sets at neutral and acidic pH.

Sriranganadane D, Waridel P, Salamin K, Reichard U, Grouzmann E, Neuhaus JM, Quadroni M, Monod M.

J Proteome Res. 2010 Jul 2;9(7):3511-9. doi: 10.1021/pr901202z.


The Cul3-KLHL21 E3 ubiquitin ligase targets aurora B to midzone microtubules in anaphase and is required for cytokinesis.

Maerki S, Olma MH, Staubli T, Steigemann P, Gerlich DW, Quadroni M, Sumara I, Peter M.

J Cell Biol. 2009 Dec 14;187(6):791-800. doi: 10.1083/jcb.200906117.


Comparison of three antigenic extracts of Eurotium amstelodami in serological diagnosis of farmer's lung disease.

Roussel S, Reboux G, Rognon B, Monod M, Grenouillet F, Quadroni M, Fellrath JM, Aubert JD, Dalphin JC, Millon L.

Clin Vaccine Immunol. 2010 Jan;17(1):160-7. doi: 10.1128/CVI.00129-09. Epub 2009 Nov 11.


Precursor ion scans for the targeted detection of stable-isotope-labeled peptides.

Colzani M, Bienvenut WV, Faes E, Quadroni M.

Rapid Commun Mass Spectrom. 2009 Nov;23(22):3570-8. doi: 10.1002/rcm.4287.


Metabolic labeling and protein linearization technology allow the study of proteins secreted by cultured cells in serum-containing media.

Colzani M, Waridel P, Laurent J, Faes E, Rüegg C, Quadroni M.

J Proteome Res. 2009 Oct;8(10):4779-88. doi: 10.1021/pr900476b.


An interaction network of the mammalian COP9 signalosome identifies Dda1 as a core subunit of multiple Cul4-based E3 ligases.

Olma MH, Roy M, Le Bihan T, Sumara I, Maerki S, Larsen B, Quadroni M, Peter M, Tyers M, Pintard L.

J Cell Sci. 2009 Apr 1;122(Pt 7):1035-44. doi: 10.1242/jcs.043539.


Profiling of T-cell receptor signaling complex assembly in human CD4 T-lymphocytes using RP protein arrays.

Brembilla NC, Cohen-Salmon I, Weber J, Rüegg C, Quadroni M, Harshman K, Doucey MA.

Proteomics. 2009 Jan;9(2):299-309. doi: 10.1002/pmic.200800359.


Proteomic analysis of membrane rafts of melanoma cells identifies protein patterns characteristic of the tumor progression stage.

Baruthio F, Quadroni M, Rüegg C, Mariotti A.

Proteomics. 2008 Nov;8(22):4733-47. doi: 10.1002/pmic.200800169.


c-Cbl expression levels regulate the functional responses of human central and effector memory CD4 T cells.

Brembilla NC, Weber J, Rimoldi D, Pradervand S, Schütz F, Pantaleo G, Rüegg C, Quadroni M, Harshman K, Doucey MA.

Blood. 2008 Aug 1;112(3):652-60. doi: 10.1182/blood-2008-01-134486. Epub 2008 May 27.


SLP-2 interacts with prohibitins in the mitochondrial inner membrane and contributes to their stability.

Da Cruz S, Parone PA, Gonzalo P, Bienvenut WV, Tondera D, Jourdain A, Quadroni M, Martinou JC.

Biochim Biophys Acta. 2008 May;1783(5):904-11. doi: 10.1016/j.bbamcr.2008.02.006. Epub 2008 Feb 20.


Oxidation of proteins: Basic principles and perspectives for blood proteomics.

Barelli S, Canellini G, Thadikkaran L, Crettaz D, Quadroni M, Rossier JS, Tissot JD, Lion N.

Proteomics Clin Appl. 2008 Feb;2(2):142-57. doi: 10.1002/prca.200780009.


Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS).

Colzani M, Schütz F, Potts A, Waridel P, Quadroni M.

Mol Cell Proteomics. 2008 May;7(5):927-37. doi: 10.1074/mcp.M700440-MCP200. Epub 2007 Dec 28.


C. elegans RPM-1 regulates axon termination and synaptogenesis through the Rab GEF GLO-4 and the Rab GTPase GLO-1.

Grill B, Bienvenut WV, Brown HM, Ackley BD, Quadroni M, Jin Y.

Neuron. 2007 Aug 16;55(4):587-601.


Comprehensive analysis of proteins secreted by Trichophyton rubrum and Trichophyton violaceum under in vitro conditions.

Giddey K, Monod M, Barblan J, Potts A, Waridel P, Zaugg C, Quadroni M.

J Proteome Res. 2007 Aug;6(8):3081-92. Epub 2007 Jul 10.


A Cul3-based E3 ligase removes Aurora B from mitotic chromosomes, regulating mitotic progression and completion of cytokinesis in human cells.

Sumara I, Quadroni M, Frei C, Olma MH, Sumara G, Ricci R, Peter M.

Dev Cell. 2007 Jun;12(6):887-900.

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