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Items: 1 to 50 of 95

1.

Preparation of Zoledronate liposome and its impact on apoptosis of Kupffer cells in rat liver.

Zhao QH, Zhang XS, Wu K, Zhang J, Xia TF, Chen J, Qin ZS, Pang LQ.

Acta Cir Bras. 2018 Dec;33(12):1052-1060. doi: 10.1590/s0102-865020180120000002.

2.

RT States: systematic annotation of the human genome using cell type-specific replication timing programs.

Poulet A, Li B, Dubos T, Rivera-Mulia JC, Gilbert DM, Qin ZS.

Bioinformatics. 2018 Nov 22. doi: 10.1093/bioinformatics/bty957. [Epub ahead of print]

PMID:
30475980
3.

Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model.

Zhang R, Hu M, Zhu YM, Qin ZS, Deng K, Liu JS.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Aug 15. doi: 10.1109/TCBB.2018.2865349. [Epub ahead of print]

PMID:
30113897
4.

EWS/ETS-Driven Ewing Sarcoma Requires BET Bromodomain Proteins.

Gollavilli PN, Pawar A, Wilder-Romans K, Natesan R, Engelke CG, Dommeti VL, Krishnamurthy PM, Nallasivam A, Apel IJ, Xu T, Qin ZS, Feng FY, Asangani IA.

Cancer Res. 2018 Aug 15;78(16):4760-4773. doi: 10.1158/0008-5472.CAN-18-0484. Epub 2018 Jun 13.

PMID:
29898995
5.

Optimized distributed systems achieve significant performance improvement on sorted merging of massive VCF files.

Sun X, Gao J, Jin P, Eng C, Burchard EG, Beaty TH, Ruczinski I, Mathias RA, Barnes K, Wang F, Qin ZS; CAAPA consortium.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy052.

6.

Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.

Karisani P, Qin ZS, Agichtein E.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bax104.

7.

Long non-coding RNA (lncRNA) small nucleolar RNA host gene 1 (SNHG1) promote cell proliferation in colorectal cancer by affecting P53.

Zhao Y, Qin ZS, Feng Y, Tang XJ, Zhang T, Yang L.

Eur Rev Med Pharmacol Sci. 2018 Feb;22(4):976-984. doi: 10.26355/eurrev_201802_14379.

8.

Using DIVAN to assess disease/trait-associated single nucleotide variants in genome-wide scale.

Chen L, Qin ZS.

BMC Res Notes. 2017 Oct 30;10(1):530. doi: 10.1186/s13104-017-2851-y.

9.

Pivotal factors concerned in design of acupuncture clinical research: From two articles in JAMA.

Wu JN, Qin ZS, Liu ZS.

Chin J Integr Med. 2017 Nov;23(11):809-811. doi: 10.1007/s11655-017-2790-4. Epub 2017 Oct 28.

PMID:
29080200
10.

[RhoA/Rho-kinase contributes to chronic pain following thoracotomy by up-regulating glutaminase 1 expression in rat spinal dorsal cord].

Liu ZY, Wang HT, Tang J, Qin ZS.

Nan Fang Yi Ke Da Xue Xue Bao. 2017 Oct 20;37(10):1358-1363. Chinese.

PMID:
29070466
11.

Improving Hierarchical Models Using Historical Data with Applications in High-Throughput Genomics Data Analysis.

Li B, Li Y, Qin ZS.

Stat Biosci. 2017 Jun;9(1):73-90. doi: 10.1007/s12561-016-9156-x. Epub 2016 Jul 8.

12.

Dexmedetomidine Protects Mouse Brain from Ischemia-Reperfusion Injury via Inhibiting Neuronal Autophagy through Up-Regulating HIF-1α.

Luo C, Ouyang MW, Fang YY, Li SJ, Zhou Q, Fan J, Qin ZS, Tao T.

Front Cell Neurosci. 2017 Jul 6;11:197. doi: 10.3389/fncel.2017.00197. eCollection 2017.

13.

[Establishment of a modified rabbit model of acute lung injury induced by cardiopulmonary bypass].

Bao Q, Hong XY, Tang J, Wang G, Chen X, Qin ZS.

Nan Fang Yi Ke Da Xue Xue Bao. 2017 Jun 20;37(6):797-801. Chinese.

PMID:
28669955
14.

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome.

Johnston HR, Hu YJ, Gao J, O'Connor TD, Abecasis GR, Wojcik GL, Gignoux CR, Gourraud PA, Lizee A, Hansen M, Genuario R, Bullis D, Lawley C, Kenny EE, Bustamante C, Beaty TH, Mathias RA, Barnes KC, Qin ZS; CAAPA Consortium.

Sci Rep. 2017 Apr 21;7:46398. doi: 10.1038/srep46398.

15.

Omicseq: a web-based search engine for exploring omics datasets.

Sun X, Pittard WS, Xu T, Chen L, Zwick ME, Jiang X, Wang F, Qin ZS.

Nucleic Acids Res. 2017 Jul 3;45(W1):W445-W452. doi: 10.1093/nar/gkx258.

16.

An approach of identifying differential nucleosome regions in multiple samples.

Liu L, Xie J, Sun X, Luo K, Qin ZS, Liu H.

BMC Genomics. 2017 Feb 7;18(1):135. doi: 10.1186/s12864-017-3541-9.

17.
18.

Genome-Wide STAT3 Binding Analysis after Histone Deacetylase Inhibition Reveals Novel Target Genes in Dendritic Cells.

Sun Y, Iyer M, McEachin R, Zhao M, Wu YM, Cao X, Oravecz-Wilson K, Zajac C, Mathewson N, Wu SJ, Rossi C, Toubai T, Qin ZS, Chinnaiyan AM, Reddy P.

J Innate Immun. 2017;9(2):126-144. doi: 10.1159/000450681. Epub 2016 Nov 19.

19.

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data.

Joseph SJ, Li B, Petit Iii RA, Qin ZS, Darrow L, Read TD.

PeerJ. 2016 Oct 18;4:e2571. eCollection 2016.

20.

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.

Mathias RA, Taub MA, Gignoux CR, Fu W, Musharoff S, O'Connor TD, Vergara C, Torgerson DG, Pino-Yanes M, Shringarpure SS, Huang L, Rafaels N, Boorgula MP, Johnston HR, Ortega VE, Levin AM, Song W, Torres R, Padhukasahasram B, Eng C, Mejia-Mejia DA, Ferguson T, Qin ZS, Scott AF, Yazdanbakhsh M, Wilson JG, Marrugo J, Lange LA, Kumar R, Avila PC, Williams LK, Watson H, Ware LB, Olopade C, Olopade O, Oliveira R, Ober C, Nicolae DL, Meyers D, Mayorga A, Knight-Madden J, Hartert T, Hansel NN, Foreman MG, Ford JG, Faruque MU, Dunston GM, Caraballo L, Burchard EG, Bleecker E, Araujo MI, Herrera-Paz EF, Gietzen K, Grus WE, Bamshad M, Bustamante CD, Kenny EE, Hernandez RD, Beaty TH, Ruczinski I, Akey J; CAAPA, Barnes KC.

Nat Commun. 2016 Oct 11;7:12522. doi: 10.1038/ncomms12522.

21.

MLL1 and MLL1 fusion proteins have distinct functions in regulating leukemic transcription program.

Xu J, Li L, Xiong J, denDekker A, Ye A, Karatas H, Liu L, Wang H, Qin ZS, Wang S, Dou Y.

Cell Discov. 2016 May 17;2:16008. doi: 10.1038/celldisc.2016.8. eCollection 2016.

22.

Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease.

Chung C, Elrick MJ, Dell'Orco JM, Qin ZS, Kalyana-Sundaram S, Chinnaiyan AM, Shakkottai VG, Lieberman AP.

PLoS Genet. 2016 May 6;12(5):e1006042. doi: 10.1371/journal.pgen.1006042. eCollection 2016 May.

23.

Expert consensus on the perioperative management of patients with sepsis.

Chen JP, Fang XM, Jin XJ, Kang RT, Liu KX, Li JB, Luo Y, Lu ZJ, Miao CH, Ma HX, Mei W, Ou YW, Qi SH, Qin ZS, Tian GG, Wu AS, Wang DX, Yu T, Yu YH, Zhao J, Zuo MZ, Zhang SH.

World J Emerg Med. 2015;6(4):245-60. doi: 10.5847/wjem.j.1920-8642.2015.04.001. No abstract available.

24.

traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.

Chen L, Qin ZS.

Bioinformatics. 2016 Apr 15;32(8):1214-6. doi: 10.1093/bioinformatics/btv741. Epub 2015 Dec 18.

25.

Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes.

Li B, Sun Z, He Q, Zhu Y, Qin ZS.

Bioinformatics. 2016 Mar 1;32(5):682-9. doi: 10.1093/bioinformatics/btv631. Epub 2015 Oct 30.

26.

One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.

Yuan S, Johnston HR, Zhang G, Li Y, Hu YJ, Qin ZS.

PLoS Comput Biol. 2015 Aug 12;11(8):e1004448. doi: 10.1371/journal.pcbi.1004448. eCollection 2015 Aug.

27.

Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing.

Li L, Lyu X, Hou C, Takenaka N, Nguyen HQ, Ong CT, Cubeñas-Potts C, Hu M, Lei EP, Bosco G, Qin ZS, Corces VG.

Mol Cell. 2015 Apr 16;58(2):216-31. doi: 10.1016/j.molcel.2015.02.023. Epub 2015 Mar 26.

28.

Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.

Xu T, Li B, Zhao M, Szulwach KE, Street RC, Lin L, Yao B, Zhang F, Jin P, Wu H, Qin ZS.

Nucleic Acids Res. 2015 Mar 11;43(5):2757-66. doi: 10.1093/nar/gkv151. Epub 2015 Feb 26.

29.

A novel statistical method for quantitative comparison of multiple ChIP-seq datasets.

Chen L, Wang C, Qin ZS, Wu H.

Bioinformatics. 2015 Jun 15;31(12):1889-96. doi: 10.1093/bioinformatics/btv094. Epub 2015 Feb 13.

30.

Propofol up-regulates expression of ABCA1, ABCG1, and SR-B1 through the PPARγ/LXRα signaling pathway in THP-1 macrophage-derived foam cells.

Ma X, Li SF, Qin ZS, Ye J, Zhao ZL, Fang HH, Yao ZW, Gu MN, Hu YW.

Cardiovasc Pathol. 2015 Jul-Aug;24(4):230-5. doi: 10.1016/j.carpath.2014.12.004. Epub 2014 Dec 27.

PMID:
25600616
31.

Propofol Attenuates Lipopolysaccharide-Induced Monocyte Chemoattractant Protein-1 Production Through Enhancing apoM and foxa2 Expression in HepG2 Cells.

Ma X, Zhao JY, Zhao ZL, Ye J, Li SF, Fang HH, Gu MN, Hu YW, Qin ZS.

Inflammation. 2015;38(3):1329-36. doi: 10.1007/s10753-014-0104-y.

PMID:
25586482
32.

[Effect of mean arterial pressure on arterial to end-tidal CO₂partial pressure difference during one-lung ventilation].

Zeng ZY, Ye J, Zhao ZL, Qin ZS.

Nan Fang Yi Ke Da Xue Xue Bao. 2014 Dec;34(12):1834-7. Chinese.

PMID:
25537914
33.

Effects of ginsenoside Rg-1 on the proliferation and osteogenic differentiation of human periodontal ligament stem cells.

Yin LH, Cheng WX, Qin ZS, Sun KM, Zhong M, Wang JK, Gao WY, Yu ZH.

Chin J Integr Med. 2015 Sep;21(9):676-81. doi: 10.1007/s11655-014-1856-9. Epub 2014 Dec 9.

PMID:
25491536
34.

Systems biology and metagenomics: a showcase of Chinese bioinformatics researchers and their work.

Zhu D, Qin ZS.

Sci China Life Sci. 2014 Nov;57(11):1051-3. doi: 10.1007/s11427-014-4755-6. Epub 2014 Oct 17. No abstract available.

PMID:
25326071
35.

Integrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myeloma.

Yang R, Chen L, Newman S, Gandhi K, Doho G, Moreno CS, Vertino PM, Bernal-Mizarchi L, Lonial S, Boise LH, Rossi M, Kowalski J, Qin ZS.

Cancer Inform. 2014 Sep 21;13(Suppl 2):49-53. doi: 10.4137/CIN.S13783. eCollection 2014. Review.

36.

Herb-drug interaction between irinotecan and psoralidin-containing herbs.

Zhang XS, Zhao ZQ, Qin ZS, Wu K, Xia TF, Pang LQ.

Eur J Drug Metab Pharmacokinet. 2015 Dec;40(4):481-4. doi: 10.1007/s13318-014-0223-8. Epub 2014 Sep 13.

PMID:
25216634
37.

Propofol inhibits lipopolysaccharide-induced tumor necrosis factor-alpha expression and myocardial depression through decreasing the generation of superoxide anion in cardiomyocytes.

Tang J, Hu JJ, Lu CH, Liang JN, Xiao JF, Liu YT, Lin CS, Qin ZS.

Oxid Med Cell Longev. 2014;2014:157376. doi: 10.1155/2014/157376. Epub 2014 Aug 11.

38.

Reciprocal occupancy of BCL6 and STAT5 on Growth Hormone target genes: contrasting transcriptional outcomes and promoter-specific roles of p300 and HDAC3.

Lin G, LaPensee CR, Qin ZS, Schwartz J.

Mol Cell Endocrinol. 2014 Sep;395(1-2):19-31. doi: 10.1016/j.mce.2014.07.020. Epub 2014 Aug 1.

39.

Insulator function and topological domain border strength scale with architectural protein occupancy.

Van Bortle K, Nichols MH, Li L, Ong CT, Takenaka N, Qin ZS, Corces VG.

Genome Biol. 2014 Jun 30;15(6):R82. doi: 10.1186/gb-2014-15-5-r82.

40.

Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD.

PLoS One. 2014 Jun 27;9(6):e99290. doi: 10.1371/journal.pone.0099290. eCollection 2014.

41.
42.

Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer.

Asangani IA, Dommeti VL, Wang X, Malik R, Cieslik M, Yang R, Escara-Wilke J, Wilder-Romans K, Dhanireddy S, Engelke C, Iyer MK, Jing X, Wu YM, Cao X, Qin ZS, Wang S, Feng FY, Chinnaiyan AM.

Nature. 2014 Jun 12;510(7504):278-82. doi: 10.1038/nature13229. Epub 2014 Apr 23.

43.

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks.

Xiang Z, Qin T, Qin ZS, He Y.

BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S9. doi: 10.1186/1752-0509-7-S3-S9.

44.

The central role of EED in the orchestration of polycomb group complexes.

Cao Q, Wang X, Zhao M, Yang R, Malik R, Qiao Y, Poliakov A, Yocum AK, Li Y, Chen W, Cao X, Jiang X, Dahiya A, Harris C, Feng FY, Kalantry S, Qin ZS, Dhanasekaran SM, Chinnaiyan AM.

Nat Commun. 2014;5:3127. doi: 10.1038/ncomms4127.

45.

Targeting MLL1 H3K4 methyltransferase activity in mixed-lineage leukemia.

Cao F, Townsend EC, Karatas H, Xu J, Li L, Lee S, Liu L, Chen Y, Ouillette P, Zhu J, Hess JL, Atadja P, Lei M, Qin ZS, Malek S, Wang S, Dou Y.

Mol Cell. 2014 Jan 23;53(2):247-61. doi: 10.1016/j.molcel.2013.12.001. Epub 2014 Jan 2.

46.

Allogeneic T cell responses are regulated by a specific miRNA-mRNA network.

Sun Y, Tawara I, Zhao M, Qin ZS, Toubai T, Mathewson N, Tamaki H, Nieves E, Chinnaiyan AM, Reddy P.

J Clin Invest. 2013 Nov;123(11):4739-54.

47.

Exploring the cooccurrence patterns of multiple sets of genomic intervals.

Wu H, Qin ZS.

Biomed Res Int. 2013;2013:617545. doi: 10.1155/2013/617545. Epub 2013 May 28.

48.

Sparsely correlated hidden Markov models with application to genome-wide location studies.

Choi H, Fermin D, Nesvizhskii AI, Ghosh D, Qin ZS.

Bioinformatics. 2013 Mar 1;29(5):533-41. doi: 10.1093/bioinformatics/btt012. Epub 2013 Jan 16.

49.

MotifOrganizer: a scalable model-based motif clustering tool for mammalian genomes.

Qin ZS, Bilenky M, Su G, Jones SJ.

Front Biosci (Elite Ed). 2013 Jan 1;5:785-97.

PMID:
23277033
50.

Characterization of the EZH2-MMSET histone methyltransferase regulatory axis in cancer.

Asangani IA, Ateeq B, Cao Q, Dodson L, Pandhi M, Kunju LP, Mehra R, Lonigro RJ, Siddiqui J, Palanisamy N, Wu YM, Cao X, Kim JH, Zhao M, Qin ZS, Iyer MK, Maher CA, Kumar-Sinha C, Varambally S, Chinnaiyan AM.

Mol Cell. 2013 Jan 10;49(1):80-93. doi: 10.1016/j.molcel.2012.10.008. Epub 2012 Nov 15.

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