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Items: 1 to 50 of 280

1.

An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China.

Tian H, Liu Y, Li Y, Wu CH, Chen B, Kraemer MUG, Li B, Cai J, Xu B, Yang Q, Wang B, Yang P, Cui Y, Song Y, Zheng P, Wang Q, Bjornstad ON, Yang R, Grenfell BT, Pybus OG, Dye C.

Science. 2020 Mar 31. pii: eabb6105. doi: 10.1126/science.abb6105. [Epub ahead of print]

PMID:
32234804
2.

The effect of human mobility and control measures on the COVID-19 epidemic in China.

Kraemer MUG, Yang CH, Gutierrez B, Wu CH, Klein B, Pigott DM; Open COVID-19 Data Working Group, du Plessis L, Faria NR, Li R, Hanage WP, Brownstein JS, Layan M, Vespignani A, Tian H, Dye C, Pybus OG, Scarpino SV.

Science. 2020 Mar 25. pii: eabb4218. doi: 10.1126/science.abb4218. [Epub ahead of print]

PMID:
32213647
3.

Routes for COVID-19 importation in Brazil.

Candido DDS, Watts A, Abade L, Kraemer MUG, Pybus OG, Croda J, Oliveira W, Khan K, Sabino EC, Faria NR.

J Travel Med. 2020 Mar 23. pii: taaa042. doi: 10.1093/jtm/taaa042. [Epub ahead of print]

PMID:
32211799
4.

Epidemiological data from the COVID-19 outbreak, real-time case information.

Xu B, Gutierrez B, Mekaru S, Sewalk K, Goodwin L, Loskill A, Cohn EL, Hswen Y, Hill SC, Cobo MM, Zarebski AE, Li S, Wu CH, Hulland E, Morgan JD, Wang L, O'Brien K, Scarpino SV, Brownstein JS, Pybus OG, Pigott DM, Kraemer MUG.

Sci Data. 2020 Mar 24;7(1):106. doi: 10.1038/s41597-020-0448-0.

5.

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.

Yang Q, Zhao X, Lemey P, Suchard MA, Bi Y, Shi W, Liu D, Qi W, Zhang G, Stenseth NC, Pybus OG, Tian H.

Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5949-5954. doi: 10.1073/pnas.1906954117. Epub 2020 Mar 2.

6.

Transmission of hepatitis C virus in HIV-positive and PrEP-using MSM in England.

Bradshaw D, Vasylyeva TI, Davis C, Pybus OG, Thézé J, Thomson EC, Martinello M, Matthews GV, Burholt R, Gilleece Y, Cooke GS, Page EE, Waters L, Nelson M.

J Viral Hepat. 2020 Mar 1. doi: 10.1111/jvh.13286. [Epub ahead of print]

PMID:
32115809
7.

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region.

Giovanetti M, Faria NR, Lourenço J, Goes de Jesus J, Xavier J, Claro IM, Kraemer MUG, Fonseca V, Dellicour S, Thézé J, da Silva Salles F, Gräf T, Silveira PP, do Nascimento VA, Costa de Souza V, de Melo Iani FC, Castilho-Martins EA, Cruz LN, Wallau G, Fabri A, Levy F, Quick J, de Azevedo V, Aguiar RS, de Oliveira T, Bôtto de Menezes C, da Costa Castilho M, Terra TM, Souza da Silva M, Bispo de Filippis AM, Luiz de Abreu A, Oliveira WK, Croda J, Campelo de Albuquerque CF, Nunes MRT, Sabino EC, Loman N, Naveca FG, Pybus OG, Alcantara LC.

Cell Rep. 2020 Feb 18;30(7):2275-2283.e7. doi: 10.1016/j.celrep.2020.01.085.

8.

Jointly inferring the dynamics of population size and sampling intensity from molecular sequences.

Parag KV, du Plessis L, Pybus OG.

Mol Biol Evol. 2020 Jan 31. pii: msaa016. doi: 10.1093/molbev/msaa016. [Epub ahead of print]

PMID:
32003829
9.

Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, Hackett JR Jr, Chiu CY.

Nat Microbiol. 2020 Mar;5(3):525. doi: 10.1038/s41564-020-0671-7.

PMID:
31965087
10.

Oropouche virus cases identified in Ecuador using an optimised qRT-PCR informed by metagenomic sequencing.

Wise EL, Márquez S, Mellors J, Paz V, Atkinson B, Gutierrez B, Zapata S, Coloma J, Pybus OG, Jackson SK, Trueba G, Fejer G, Logue CH, Pullan ST.

PLoS Negl Trop Dis. 2020 Jan 21;14(1):e0007897. doi: 10.1371/journal.pntd.0007897. eCollection 2020 Jan.

11.

Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.

Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, R Hackett J Jr, Chiu CY.

Nat Microbiol. 2020 Mar;5(3):443-454. doi: 10.1038/s41564-019-0637-9. Epub 2020 Jan 13. Erratum in: Nat Microbiol. 2020 Jan 21;:.

12.

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa.

Faria NR, Vidal N, Lourenco J, Raghwani J, Sigaloff KCE, Tatem AJ, van de Vijver DAM, Pineda-Peña AC, Rose R, Wallis CL, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Muwonga J, Suchard MA, Rinke de Wit TF, Hamers RL, Ndembi N, Baele G, Peeters M, Pybus OG, Lemey P, Dellicour S.

PLoS Pathog. 2019 Dec 6;15(12):e1007976. doi: 10.1371/journal.ppat.1007976. eCollection 2019 Dec.

13.

Evolutionary Dynamics of Oropouche Virus in South America.

Gutierrez B, Wise EL, Pullan ST, Logue CH, Bowden TA, Escalera-Zamudio M, Trueba G, Nunes MRT, Faria NR, Pybus OG.

J Virol. 2020 Feb 14;94(5). pii: e01127-19. doi: 10.1128/JVI.01127-19. Print 2020 Feb 14.

14.

A structural basis for antibody-mediated neutralization of Nipah virus reveals a site of vulnerability at the fusion glycoprotein apex.

Avanzato VA, Oguntuyo KY, Escalera-Zamudio M, Gutierrez B, Golden M, Kosakovsky Pond SL, Pryce R, Walter TS, Seow J, Doores KJ, Pybus OG, Munster VJ, Lee B, Bowden TA.

Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25057-25067. doi: 10.1073/pnas.1912503116. Epub 2019 Nov 25.

15.

Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures.

Golden M, Murrell B, Martin D, Pybus OG, Hein J.

Mol Biol Evol. 2020 Feb 1;37(2):576-592. doi: 10.1093/molbev/msz243.

16.

Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination.

Hoehn KB, Vander Heiden JA, Zhou JQ, Lunter G, Pybus OG, Kleinstein SH.

Proc Natl Acad Sci U S A. 2019 Nov 5;116(45):22664-22672. doi: 10.1073/pnas.1906020116. Epub 2019 Oct 21.

17.

Emergence of the Asian lineage of Zika virus in Angola: an outbreak investigation.

Hill SC, Vasconcelos J, Neto Z, Jandondo D, Zé-Zé L, Aguiar RS, Xavier J, Thézé J, Mirandela M, Micolo Cândido AL, Vaz F, Sebastião CDS, Wu CH, Kraemer MUG, Melo A, Schamber-Reis BLF, de Azevedo GS, Tanuri A, Higa LM, Clemente C, da Silva SP, da Silva Candido D, Claro IM, Quibuco D, Domingos C, Pocongo B, Watts AG, Khan K, Alcantara LCJ, Sabino EC, Lackritz E, Pybus OG, Alves MJ, Afonso J, Faria NR.

Lancet Infect Dis. 2019 Oct;19(10):1138-1147. doi: 10.1016/S1473-3099(19)30293-2.

18.

Erratum: The multifurcating skyline plot.

Hoscheit P, Pybus OG.

Virus Evol. 2019 Sep 23;5(2):vez040. doi: 10.1093/ve/vez040. eCollection 2019 Jul.

19.

The multifurcating skyline plot.

Hoscheit P, Pybus OG.

Virus Evol. 2019 Aug 29;5(2):vez031. doi: 10.1093/ve/vez031. eCollection 2019 Jul. Erratum in: Virus Evol. 2019 Sep 23;5(2):vez040.

20.

Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo.

Li T, Mbala-Kingebeni P, Naccache SN, Thézé J, Bouquet J, Federman S, Somasekar S, Yu G, Sanchez-San Martin C, Achari A, Schneider BS, Rimoin AW, Rambaut A, Nsio J, Mulembakani P, Ahuka-Mundeke S, Kapetshi J, Pybus OG, Muyembe-Tamfum JJ, Chiu CY.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00827-19. doi: 10.1128/JCM.00827-19. Print 2019 Sep.

21.

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

Fonseca V, Libin PJK, Theys K, Faria NR, Nunes MRT, Restovic MI, Freire M, Giovanetti M, Cuypers L, Nowé A, Abecasis A, Deforche K, Santiago GA, Siqueira IC, San EJ, Machado KCB, Azevedo V, Filippis AMB, Cunha RVD, Pybus OG, Vandamme AM, Alcantara LCJ, de Oliveira T.

PLoS Negl Trop Dis. 2019 May 8;13(5):e0007231. doi: 10.1371/journal.pntd.0007231. eCollection 2019 May.

22.

Comparative micro-epidemiology of pathogenic avian influenza virus outbreaks in a wild bird population.

Hill SC, Hansen R, Watson S, Coward V, Russell C, Cooper J, Essen S, Everest H, Parag KV, Fiddaman S, Reid S, Lewis N, Brookes SM, Smith AL, Sheldon B, Perrins CM, Brown IH, Pybus OG.

Philos Trans R Soc Lond B Biol Sci. 2019 Jun 24;374(1775):20180259. doi: 10.1098/rstb.2018.0259.

23.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):901. doi: 10.1038/s41564-019-0440-7.

PMID:
30962571
24.

Reconstruction of the Genetic History and the Current Spread of HIV-1 Subtype A in Germany.

Hanke K, Faria NR, Kühnert D, Yousef KP, Hauser A, Meixenberger K, Hofmann A, Bremer V, Bartmeyer B, Pybus O, Kücherer C, von Kleist M, Bannert N.

J Virol. 2019 May 29;93(12). pii: e02238-18. doi: 10.1128/JVI.02238-18. Print 2019 Jun 15.

25.

Utilizing general human movement models to predict the spread of emerging infectious diseases in resource poor settings.

Kraemer MUG, Golding N, Bisanzio D, Bhatt S, Pigott DM, Ray SE, Brady OJ, Brownstein JS, Faria NR, Cummings DAT, Pybus OG, Smith DL, Tatem AJ, Hay SI, Reiner RC Jr.

Sci Rep. 2019 Mar 26;9(1):5151. doi: 10.1038/s41598-019-41192-3.

26.

Publisher Correction: Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Weaver ND, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):900. doi: 10.1038/s41564-019-0429-2.

PMID:
30903094
27.

Early Genomic Detection of Cosmopolitan Genotype of Dengue Virus Serotype 2, Angola, 2018.

Hill SC, Neto de Vasconcelos J, Granja BG, Thézé J, Jandondo D, Neto Z, Mirandela M, Sebastião CDS, Cândido ALM, Clemente C, Pereira da Silva S, de Oliveira T, Pybus OG, Faria NR, Afonso JM.

Emerg Infect Dis. 2019 Apr;25(4):784-787. doi: 10.3201/eid2504.180958.

28.

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

Naveca FG, Claro I, Giovanetti M, de Jesus JG, Xavier J, Iani FCM, do Nascimento VA, de Souza VC, Silveira PP, Lourenço J, Santillana M, Kraemer MUG, Quick J, Hill SC, Thézé J, Carvalho RDO, Azevedo V, Salles FCDS, Nunes MRT, Lemos PDS, Candido DDS, Pereira GC, Oliveira MAA, Meneses CAR, Maito RM, Cunha CRSB, Campos DPS, Castilho MDC, Siqueira TCDS, Terra TM, de Albuquerque CFC, da Cruz LN, Abreu AL, Martins DV, Simoes DSMV, Aguiar RS, Luz SLB, Loman N, Pybus OG, Sabino EC, Okumoto O, Alcantara LCJ, Faria NR.

PLoS Negl Trop Dis. 2019 Mar 7;13(3):e0007065. doi: 10.1371/journal.pntd.0007065. eCollection 2019 Mar.

29.

Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.

Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N.

Nat Microbiol. 2019 May;4(5):854-863. doi: 10.1038/s41564-019-0376-y. Epub 2019 Mar 4. Erratum in: Nat Microbiol. 2019 Mar 21;:. Nat Microbiol. 2019 Apr 8;:.

30.

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology.

Vasylyeva TI, du Plessis L, Pineda-Peña AC, Kühnert D, Lemey P, Vandamme AM, Gomes P, Camacho RJ, Pybus OG, Abecasis AB, Faria NR.

J Infect Dis. 2019 Jun 19;220(2):233-243. doi: 10.1093/infdis/jiz085.

31.

Reverse immunodynamics: a new method for identifying targets of protective immunity.

Spensley KJ, Wikramaratna PS, Penman BS, Walker A, Smith AL, Pybus OG, Jean L, Gupta S, Lourenço J.

Sci Rep. 2019 Feb 15;9(1):2164. doi: 10.1038/s41598-018-37288-x.

32.

Precision epidemiology for infectious disease control.

Ladner JT, Grubaugh ND, Pybus OG, Andersen KG.

Nat Med. 2019 Feb;25(2):206-211. doi: 10.1038/s41591-019-0345-2. Epub 2019 Feb 6. Review.

33.

Robust Design for Coalescent Model Inference.

Parag KV, Pybus OG.

Syst Biol. 2019 Sep 1;68(5):730-743. doi: 10.1093/sysbio/syz008. Erratum in: Syst Biol. 2019 Nov 1;68(6):1062.

PMID:
30726979
34.

Parallel molecular evolution and adaptation in viruses.

Gutierrez B, Escalera-Zamudio M, Pybus OG.

Curr Opin Virol. 2019 Feb;34:90-96. doi: 10.1016/j.coviro.2018.12.006. Epub 2019 Jan 28. Review.

35.

High-Resolution Evolutionary Analysis of Within-Host Hepatitis C Virus Infection.

Raghwani J, Wu CH, Ho CKY, De Jong M, Molenkamp R, Schinkel J, Pybus OG, Lythgoe KA.

J Infect Dis. 2019 May 5;219(11):1722-1729. doi: 10.1093/infdis/jiy747.

36.

A Protective Monoclonal Antibody Targets a Site of Vulnerability on the Surface of Rift Valley Fever Virus.

Allen ER, Krumm SA, Raghwani J, Halldorsson S, Elliott A, Graham VA, Koudriakova E, Harlos K, Wright D, Warimwe GM, Brennan B, Huiskonen JT, Dowall SD, Elliott RM, Pybus OG, Burton DR, Hewson R, Doores KJ, Bowden TA.

Cell Rep. 2018 Dec 26;25(13):3750-3758.e4. doi: 10.1016/j.celrep.2018.12.001.

37.

Tracking virus outbreaks in the twenty-first century.

Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, Andersen KG.

Nat Microbiol. 2019 Jan;4(1):10-19. doi: 10.1038/s41564-018-0296-2. Epub 2018 Dec 13. Review.

38.

Transmission dynamics of re-emerging rabies in domestic dogs of rural China.

Tian H, Feng Y, Vrancken B, Cazelles B, Tan H, Gill MS, Yang Q, Li Y, Yang W, Zhang Y, Zhang Y, Lemey P, Pybus OG, Stenseth NC, Zhang H, Dellicour S.

PLoS Pathog. 2018 Dec 6;14(12):e1007392. doi: 10.1371/journal.ppat.1007392. eCollection 2018 Dec.

39.

The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine.

Vasylyeva TI, Liulchuk M, du Plessis L, Fearnhill E, Zadorozhna V, Babii N, Scherbinska A, Novitsky V, Pybus OG, Faria NR.

AIDS Res Hum Retroviruses. 2019 Feb;35(2):155-163. doi: 10.1089/AID.2018.0167. Epub 2019 Jan 14.

40.

Reconstruction and prediction of viral disease epidemics.

Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S.

Epidemiol Infect. 2018 Nov 5:1-7. doi: 10.1017/S0950268818002881. [Epub ahead of print]

41.

Highly Diverse Hepatitis C Strains Detected in Sub-Saharan Africa Have Unknown Susceptibility to Direct-Acting Antiviral Treatments.

Davis C, Mgomella GS, da Silva Filipe A, Frost EH, Giroux G, Hughes J, Hogan C, Kaleebu P, Asiki G, McLauchlan J, Niebel M, Ocama P, Pomila C, Pybus OG, Pépin J, Simmonds P, Singer JB, Sreenu VB, Wekesa C, Young EH, Murphy DG, Sandhu M, Thomson EC.

Hepatology. 2019 Apr;69(4):1426-1441. doi: 10.1002/hep.30342. Epub 2019 Mar 22.

42.

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck.

Flammer PG, Dellicour S, Preston SG, Rieger D, Warren S, Tan CKW, Nicholson R, Přichystalová R, Bleicher N, Wahl J, Faria NR, Pybus OG, Pollard M, Smith AL.

Proc Biol Sci. 2018 Oct 3;285(1888). pii: 20180991. doi: 10.1098/rspb.2018.0991.

43.

A naturally protective epitope of limited variability as an influenza vaccine target.

Thompson CP, Lourenço J, Walters AA, Obolski U, Edmans M, Palmer DS, Kooblall K, Carnell GW, O'Connor D, Bowden TA, Pybus OG, Pollard AJ, Temperton NJ, Lambe T, Gilbert SC, Gupta S.

Nat Commun. 2018 Sep 21;9(1):3859. doi: 10.1038/s41467-018-06228-8.

44.

Molecular Evolution, Diversity, and Adaptation of Influenza A(H7N9) Viruses in China.

Lu J, Raghwani J, Pryce R, Bowden TA, Thézé J, Huang S, Song Y, Zou L, Liang L, Bai R, Jing Y, Zhou P, Kang M, Yi L, Wu J, Pybus OG, Ke C.

Emerg Infect Dis. 2018 Oct;24(10):1795-1805. doi: 10.3201/eid2410.171063.

45.

Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl.

Wille M, Latorre-Margalef N, Tolf C, Halpin R, Wentworth D, Fouchier RAM, Raghwani J, Pybus OG, Olsen B, Waldenström J.

Virus Evol. 2018 Aug 14;4(2):vey025. doi: 10.1093/ve/vey025. eCollection 2018 Jul.

46.

Genomic and epidemiological monitoring of yellow fever virus transmission potential.

Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG.

Science. 2018 Aug 31;361(6405):894-899. doi: 10.1126/science.aat7115. Epub 2018 Aug 23.

47.

Genomic surveillance of avian-origin influenza A viruses causing human disease.

Lam TT, Pybus OG.

Genome Med. 2018 Jun 27;10(1):50. doi: 10.1186/s13073-018-0560-3. Review.

48.

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P.

Nat Commun. 2018 Jun 8;9(1):2222. doi: 10.1038/s41467-018-03763-2.

49.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

50.

Exact Bayesian inference for phylogenetic birth-death models.

Parag KV, Pybus OG.

Bioinformatics. 2018 Nov 1;34(21):3638-3645. doi: 10.1093/bioinformatics/bty337.

PMID:
29718104

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