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Items: 18

1.

A likelihood ratio test for changes in homeolog expression bias.

Smith RD, Kinser TJ, Smith GDC, Puzey JR.

BMC Bioinformatics. 2019 Mar 20;20(1):149. doi: 10.1186/s12859-019-2709-5.

2.

Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.

PMID:
30842601
3.

Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.

PMID:
30804557
4.

Monarch butterfly and milkweed declines substantially predate the use of genetically modified crops.

Boyle JH, Dalgleish HJ, Puzey JR.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3006-3011. doi: 10.1073/pnas.1811437116. Epub 2019 Feb 5.

PMID:
30723147
5.

Long- and short-term responses of Asclepias species differ in respect to fire, grazing, and nutrient addition.

Ricono A, Dixon R, Eaton I, Brightbill CM, Yaziji Y, Puzey JR, Dalgleish HJ.

Am J Bot. 2018 Dec;105(12):2008-2017. doi: 10.1002/ajb2.1197. Epub 2018 Nov 28.

PMID:
30485407
6.

Selective trade-offs maintain alleles underpinning complex trait variation in plants.

Troth A, Puzey JR, Kim RS, Willis JH, Kelly JK.

Science. 2018 Aug 3;361(6401):475-478. doi: 10.1126/science.aat5760.

PMID:
30072534
7.

The causes and consequences of subgenome dominance in hybrids and recent polyploids.

Bird KA, VanBuren R, Puzey JR, Edger PP.

New Phytol. 2018 Oct;220(1):87-93. doi: 10.1111/nph.15256. Epub 2018 Jun 8. Review.

PMID:
29882360
8.

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.

9.

A Whole-Transcriptome Approach to Evaluating Reference Genes for Quantitative Gene Expression Studies: A Case Study in Mimulus.

Stanton KA, Edger PP, Puzey JR, Kinser T, Cheng P, Vernon DM, Forsthoefel NR, Cooley AM.

G3 (Bethesda). 2017 Apr 3;7(4):1085-1095. doi: 10.1534/g3.116.038075.

10.

Geographic Variation of Plant Circadian Clock Function in Natural and Agricultural Settings.

Greenham K, Lou P, Puzey JR, Kumar G, Arnevik C, Farid H, Willis JH, McClung CR.

J Biol Rhythms. 2017 Feb;32(1):26-34. doi: 10.1177/0748730416679307. Epub 2016 Dec 26.

PMID:
27920227
11.

Population structure and local selection yield high genomic variation in Mimulus guttatus.

Puzey JR, Willis JH, Kelly JK.

Mol Ecol. 2017 Jan;26(2):519-535. doi: 10.1111/mec.13922. Epub 2016 Dec 19.

12.

Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor.

Vallejo-Marín M, Cooley AM, Lee MY, Folmer M, McKain MR, Puzey JR.

Am J Bot. 2016 Jul;103(7):1272-88. doi: 10.3732/ajb.1500471. Epub 2016 May 24.

13.

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species Mimulus peregrinus.

Vallejo-Marín M, Buggs RJA, Cooley AM, Puzey JR.

Evolution. 2015 Jun;69(6):1487-1500. doi: 10.1111/evo.12678. Epub 2015 May 27. Erratum in: Evolution. 2016 Mar;70(3):740-1.

14.

How the cucumber tendril coils and overwinds.

Gerbode SJ, Puzey JR, McCormick AG, Mahadevan L.

Science. 2012 Aug 31;337(6098):1087-91. doi: 10.1126/science.1223304.

15.

Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets.

Puzey JR, Karger A, Axtell M, Kramer EM.

PLoS One. 2012;7(3):e33034. doi: 10.1371/journal.pone.0033034. Epub 2012 Mar 19.

16.

Evolution of spur-length diversity in Aquilegia petals is achieved solely through cell-shape anisotropy.

Puzey JR, Gerbode SJ, Hodges SA, Kramer EM, Mahadevan L.

Proc Biol Sci. 2012 Apr 22;279(1733):1640-5. doi: 10.1098/rspb.2011.1873. Epub 2011 Nov 16.

17.

Populus CEN/TFL1 regulates first onset of flowering, axillary meristem identity and dormancy release in Populus.

Mohamed R, Wang CT, Ma C, Shevchenko O, Dye SJ, Puzey JR, Etherington E, Sheng X, Meilan R, Strauss SH, Brunner AM.

Plant J. 2010 May 1;62(4):674-88. doi: 10.1111/j.1365-313X.2010.04185.x. Epub 2010 Feb 26.

18.

Identification of conserved Aquilegia coerulea microRNAs and their targets.

Puzey JR, Kramer EM.

Gene. 2009 Dec 1;448(1):46-56. doi: 10.1016/j.gene.2009.08.005. Epub 2009 Aug 19.

PMID:
19699282

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