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Items: 19

1.

MCMCtreeR: functions to prepare MCMCtree analyses and visualise posterior ages on trees.

Puttick MN.

Bioinformatics. 2019 Jul 11. pii: btz554. doi: 10.1093/bioinformatics/btz554. [Epub ahead of print]

PMID:
31292621
2.

Characterization of melanosomes involved in the production of non-iridescent structural feather colours and their detection in the fossil record.

Babarović F, Puttick MN, Zaher M, Learmonth E, Gallimore EJ, Smithwick FM, Mayr G, Vinther J.

J R Soc Interface. 2019 Jun 28;16(155):20180921. doi: 10.1098/rsif.2018.0921. Epub 2019 Jun 26.

3.

Reply to Hedges et al.: Accurate timetrees do indeed require accurate calibrations.

Morris JL, Puttick MN, Clark JW, Edwards D, Kenrick P, Pressel S, Wellman CH, Yang Z, Schneider H, Donoghue PCJ.

Proc Natl Acad Sci U S A. 2018 Oct 9;115(41):E9512-E9513. doi: 10.1073/pnas.1812816115. Epub 2018 Sep 28. No abstract available.

4.

Evolution of metazoan morphological disparity.

Deline B, Greenwood JM, Clark JW, Puttick MN, Peterson KJ, Donoghue PCJ.

Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):E8909-E8918. doi: 10.1073/pnas.1810575115. Epub 2018 Sep 4.

5.

Integrated genomic and fossil evidence illuminates life's early evolution and eukaryote origin.

Betts HC, Puttick MN, Clark JW, Williams TA, Donoghue PCJ, Pisani D.

Nat Ecol Evol. 2018 Oct;2(10):1556-1562. doi: 10.1038/s41559-018-0644-x. Epub 2018 Aug 20.

6.

Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss.

Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ.

Genome Biol Evol. 2018 Jun 1;10(6):1457-1470. doi: 10.1093/gbe/evy096.

7.

The timescale of early land plant evolution.

Morris JL, Puttick MN, Clark JW, Edwards D, Kenrick P, Pressel S, Wellman CH, Yang Z, Schneider H, Donoghue PCJ.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2274-E2283. doi: 10.1073/pnas.1719588115. Epub 2018 Feb 20.

8.

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte.

Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ.

Curr Biol. 2018 Mar 5;28(5):733-745.e2. doi: 10.1016/j.cub.2018.01.063. Epub 2018 Feb 15.

9.

Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data.

O'Reilly JE, Puttick MN, Pisani D, Donoghue PCJ.

Palaeontology. 2018 Jan;61(1):105-118. doi: 10.1111/pala.12330. Epub 2017 Oct 31.

10.

Mixed evidence for early bursts of morphological evolution in extant clades.

Puttick MN.

J Evol Biol. 2018 Apr;31(4):502-515. doi: 10.1111/jeb.13236. Epub 2018 Jan 18.

PMID:
29285828
11.

Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.

Puttick MN, O'Reilly JE, Oakley D, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PCJ.

Proc Biol Sci. 2017 Oct 11;284(1864). pii: 20171636. doi: 10.1098/rspb.2017.1636. No abstract available.

12.

Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data.

Puttick MN, O'Reilly JE, Tanner AR, Fleming JF, Clark J, Holloway L, Lozano-Fernandez J, Parry LA, Tarver JE, Pisani D, Donoghue PC.

Proc Biol Sci. 2017 Jan 11;284(1846). pii: 20162290. doi: 10.1098/rspb.2016.2290.

13.

Partially incorrect fossil data augment analyses of discrete trait evolution in living species.

Puttick MN.

Biol Lett. 2016 Aug;12(8). pii: 20160392. doi: 10.1098/rsbl.2016.0392.

14.

A molecular palaeobiological exploration of arthropod terrestrialization.

Lozano-Fernandez J, Carton R, Tanner AR, Puttick MN, Blaxter M, Vinther J, Olesen J, Giribet G, Edgecombe GD, Pisani D.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150133. doi: 10.1098/rstb.2015.0133. Review.

15.

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data.

O'Reilly JE, Puttick MN, Parry L, Tanner AR, Tarver JE, Fleming J, Pisani D, Donoghue PC.

Biol Lett. 2016 Apr;12(4). pii: 20160081. doi: 10.1098/rsbl.2016.0081.

16.

Dating placentalia: Morphological clocks fail to close the molecular fossil gap.

Puttick MN, Thomas GH, Benton MJ.

Evolution. 2016 Apr;70(4):873-86. doi: 10.1111/evo.12907. Epub 2016 Apr 6.

17.

Fossils and living taxa agree on patterns of body mass evolution: a case study with Afrotheria.

Puttick MN, Thomas GH.

Proc Biol Sci. 2015 Dec 22;282(1821):20152023. doi: 10.1098/rspb.2015.2023.

18.

Size is not everything: rates of genome size evolution, not C-value, correlate with speciation in angiosperms.

Puttick MN, Clark J, Donoghue PC.

Proc Biol Sci. 2015 Dec 7;282(1820):20152289. doi: 10.1098/rspb.2015.2289.

19.

High rates of evolution preceded the origin of birds.

Puttick MN, Thomas GH, Benton MJ.

Evolution. 2014 May;68(5):1497-510. doi: 10.1111/evo.12363. Epub 2014 Feb 23.

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