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Items: 7


The Clonal Evolution of Metastatic Osteosarcoma as Shaped by Cisplatin Treatment.

Brady SW, Ma X, Bahrami A, Satas G, Wu G, Newman S, Rusch M, Putnam DK, Mulder HL, Yergeau DA, Edmonson MN, Easton J, Alexandrov LB, Chen X, Mardis ER, Wilson RK, Downing JR, Pappo AS, Raphael BJ, Dyer MA, Zhang J.

Mol Cancer Res. 2019 Jan 16. doi: 10.1158/1541-7786.MCR-18-0620. [Epub ahead of print]


CASP11--An Evaluation of a Modular BCL::Fold-Based Protein Structure Prediction Pipeline.

Fischer AW, Heinze S, Putnam DK, Li B, Pino JC, Xia Y, Lopez CF, Meiler J.

PLoS One. 2016 Apr 5;11(4):e0152517. doi: 10.1371/journal.pone.0152517. eCollection 2016.


A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers.

Vandavasi VG, Putnam DK, Zhang Q, Petridis L, Heller WT, Nixon BT, Haigler CH, Kalluri U, Coates L, Langan P, Smith JC, Meiler J, O'Neill H.

Plant Physiol. 2016 Jan;170(1):123-35. doi: 10.1104/pp.15.01356. Epub 2015 Nov 10.


BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles.

Putnam DK, Weiner BE, Woetzel N, Lowe EW Jr, Meiler J.

Proteins. 2015 Aug;83(8):1500-12. doi: 10.1002/prot.24838. Epub 2015 Jul 1.


CASP10-BCL::Fold efficiently samples topologies of large proteins.

Heinze S, Putnam DK, Fischer AW, Kohlmann T, Weiner BE, Meiler J.

Proteins. 2015 Mar;83(3):547-63. doi: 10.1002/prot.24733.


Reconstruction of SAXS Profiles from Protein Structures.

Putnam DK, Lowe EW Jr, Meiler J.

Comput Struct Biotechnol J. 2013 Nov 26;8:e201308006. doi: 10.5936/csbj.201308006. eCollection 2013. Review.


Exploring schizophrenia drug-gene interactions through molecular network and pathway modeling.

Putnam DK, Sun J, Zhao Z.

AMIA Annu Symp Proc. 2011;2011:1127-33. Epub 2011 Oct 22.

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