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Items: 48

1.

Factor Analysis for Bicluster Acquisition (FABIA) revealed vincristine-sensitive transcript pattern of canine transmissible venereal tumors.

Chokeshaiusaha K, Puthier D, Nguyen C, Sudjaidee P, Sananmuang T.

Heliyon. 2019 May 14;5(5):e01558. doi: 10.1016/j.heliyon.2019.e01558. eCollection 2019 May.

2.

A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation.

Saadi W, Kermezli Y, Dao LTM, Mathieu E, Santiago-Algarra D, Manosalva I, Torres M, Belhocine M, Pradel L, Loriod B, Aribi M, Puthier D, Spicuglia S.

Sci Rep. 2019 Mar 18;9(1):4707. doi: 10.1038/s41598-019-41247-5.

3.

Explore, edit and leverage genomic annotations using Python GTF toolkit.

Lopez F, Charbonnier G, Kermezli Y, Belhocine M, Ferré Q, Zweig N, Aribi M, Gonzalez A, Spicuglia S, Puthier D.

Bioinformatics. 2019 Sep 15;35(18):3487-3488. doi: 10.1093/bioinformatics/btz116.

PMID:
30768152
4.

Epigenetic Silencing Affects l-Asparaginase Sensitivity and Predicts Outcome in T-ALL.

Touzart A, Lengliné E, Latiri M, Belhocine M, Smith C, Thomas X, Spicuglia S, Puthier D, Pflumio F, Leguay T, Graux C, Chalandon Y, Huguet F, Leprêtre S, Ifrah N, Dombret H, Macintyre E, Hunault M, Boissel N, Asnafi V.

Clin Cancer Res. 2019 Apr 15;25(8):2483-2493. doi: 10.1158/1078-0432.CCR-18-1844. Epub 2019 Jan 18.

PMID:
30659025
5.

A comprehensive catalog of LncRNAs expressed in T-cell acute lymphoblastic leukemia.

Kermezli Y, Saadi W, Belhocine M, Mathieu EL, Garibal MA, Asnafi V, Aribi M, Spicuglia S, Puthier D.

Leuk Lymphoma. 2019 Aug;60(8):2002-2014. doi: 10.1080/10428194.2018.1551534. Epub 2019 Jan 16.

PMID:
30648438
6.

An innovative approach to predict immune-associated genes mutually targeted by cow and human milk microRNAs expression profiles.

Chokeshaiusaha K, Sananmuang T, Puthier D, Nguyen C.

Vet World. 2018 Sep;11(9):1203-1209. doi: 10.14202/vetworld.2018.1203-1209. Epub 2018 Sep 1.

7.

Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells.

Shiota H, Barral S, Buchou T, Tan M, Couté Y, Charbonnier G, Reynoird N, Boussouar F, Gérard M, Zhu M, Bargier L, Puthier D, Chuffart F, Bourova-Flin E, Picaud S, Filippakopoulos P, Goudarzi A, Ibrahim Z, Panne D, Rousseaux S, Zhao Y, Khochbin S.

Cell Rep. 2018 Sep 25;24(13):3477-3487.e6. doi: 10.1016/j.celrep.2018.08.069.

8.

Widespread Enhancer Activity from Core Promoters.

Medina-Rivera A, Santiago-Algarra D, Puthier D, Spicuglia S.

Trends Biochem Sci. 2018 Jun;43(6):452-468. doi: 10.1016/j.tibs.2018.03.004. Epub 2018 Apr 16. Review.

9.

A demonstration of the H3 trimethylation ChIP-seq analysis of galline follicular mesenchymal cells and male germ cells.

Chokeshaiusaha K, Puthier D, Nguyen C, Sananmuang T.

Asian-Australas J Anim Sci. 2018 Jun;31(6):791-797. doi: 10.5713/ajas.17.0744. Epub 2018 Jan 26.

10.

Genome-wide characterization of mammalian promoters with distal enhancer functions.

Dao LTM, Galindo-Albarrán AO, Castro-Mondragon JA, Andrieu-Soler C, Medina-Rivera A, Souaid C, Charbonnier G, Griffon A, Vanhille L, Stephen T, Alomairi J, Martin D, Torres M, Fernandez N, Soler E, van Helden J, Puthier D, Spicuglia S.

Nat Genet. 2017 Jul;49(7):1073-1081. doi: 10.1038/ng.3884. Epub 2017 Jun 5.

PMID:
28581502
11.

Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells.

Barral S, Morozumi Y, Tanaka H, Montellier E, Govin J, de Dieuleveult M, Charbonnier G, Couté Y, Puthier D, Buchou T, Boussouar F, Urahama T, Fenaille F, Curtet S, Héry P, Fernandez-Nunez N, Shiota H, Gérard M, Rousseaux S, Kurumizaka H, Khochbin S.

Mol Cell. 2017 Apr 6;66(1):89-101.e8. doi: 10.1016/j.molcel.2017.02.025. Epub 2017 Mar 30.

12.

E2F transcription factors associated with up-regulated genes in glioblastoma.

Donaires FS, Godoy PR, Leandro GS, Puthier D, Sakamoto-Hojo ET.

Cancer Biomark. 2017;18(2):199-208. doi: 10.3233/CBM-161628.

PMID:
27983535
13.

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters.

Goudarzi A, Zhang D, Huang H, Barral S, Kwon OK, Qi S, Tang Z, Buchou T, Vitte AL, He T, Cheng Z, Montellier E, Gaucher J, Curtet S, Debernardi A, Charbonnier G, Puthier D, Petosa C, Panne D, Rousseaux S, Roeder RG, Zhao Y, Khochbin S.

Mol Cell. 2016 Apr 21;62(2):169-180. doi: 10.1016/j.molcel.2016.03.014.

14.

[Functions of lncRNA in development and diseases].

Mathieu EL, Belhocine M, Dao LT, Puthier D, Spicuglia S.

Med Sci (Paris). 2014 Aug-Sep;30(8-9):790-6. doi: 10.1051/medsci/20143008018. Epub 2014 Sep 1. Review. French.

15.

Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation.

Evangelista AF, Collares CV, Xavier DJ, Macedo C, Manoel-Caetano FS, Rassi DM, Foss-Freitas MC, Foss MC, Sakamoto-Hojo ET, Nguyen C, Puthier D, Passos GA, Donadi EA.

BMC Med Genomics. 2014 May 23;7:28. doi: 10.1186/1755-8794-7-28.

16.

Drosophila microbiota modulates host metabolic gene expression via IMD/NF-κB signaling.

Erkosar B, Defaye A, Bozonnet N, Puthier D, Royet J, Leulier F.

PLoS One. 2014 Apr 14;9(4):e94729. doi: 10.1371/journal.pone.0094729. eCollection 2014. Erratum in: PLoS One. 2014 Jul;9(7):e104120. Erkosar Combe, Berra [corrected to Erkosar, Berra].

17.

Divergent transcription is associated with promoters of transcriptional regulators.

Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S.

BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914.

18.

Identifying common and specific microRNAs expressed in peripheral blood mononuclear cell of type 1, type 2, and gestational diabetes mellitus patients.

Collares CV, Evangelista AF, Xavier DJ, Rassi DM, Arns T, Foss-Freitas MC, Foss MC, Puthier D, Sakamoto-Hojo ET, Passos GA, Donadi EA.

BMC Res Notes. 2013 Nov 26;6:491. doi: 10.1186/1756-0500-6-491.

19.

An update on recent methods applied for deciphering the diversity of the noncoding RNA genome structure and function.

Spicuglia S, Maqbool MA, Puthier D, Andrau JC.

Methods. 2013 Sep 1;63(1):3-17. doi: 10.1016/j.ymeth.2013.04.003. Epub 2013 Apr 15.

PMID:
23597756
20.

Gene expression profiles displayed by peripheral blood mononuclear cells from patients with type 2 diabetes mellitus focusing on biological processes implicated on the pathogenesis of the disease.

Manoel-Caetano FS, Xavier DJ, Evangelista AF, Takahashi P, Collares CV, Puthier D, Foss-Freitas MC, Foss MC, Donadi EA, Passos GA, Sakamoto-Hojo ET.

Gene. 2012 Dec 15;511(2):151-60. doi: 10.1016/j.gene.2012.09.090. Epub 2012 Oct 2.

PMID:
23036710
21.

TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.

Lepoivre C, Bergon A, Lopez F, Perumal NB, Nguyen C, Imbert J, Puthier D.

BMC Bioinformatics. 2012 Jan 31;13:19. doi: 10.1186/1471-2105-13-19.

22.

An evaluation of the role of gene expression in the prediction and diagnosis of ventilator-associated pneumonia.

Textoris J, Loriod B, Benayoun L, Gourraud PA, Puthier D, Albanèse J, Mantz J, Martin C, Nguyen C, Leone M.

Anesthesiology. 2011 Aug;115(2):344-52. doi: 10.1097/ALN.0b013e318225ba26.

PMID:
21796056
23.

Platelets alter gene expression profile in human brain endothelial cells in an in vitro model of cerebral malaria.

Barbier M, Faille D, Loriod B, Textoris J, Camus C, Puthier D, Flori L, Wassmer SC, Victorero G, Alessi MC, Fusaï T, Nguyen C, Grau GE, Rihet P.

PLoS One. 2011;6(5):e19651. doi: 10.1371/journal.pone.0019651. Epub 2011 May 16.

24.

TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database.

Lopez F, Textoris J, Bergon A, Didier G, Remy E, Granjeaud S, Imbert J, Nguyen C, Puthier D.

PLoS One. 2008;3(12):e4001. doi: 10.1371/journal.pone.0004001. Epub 2008 Dec 23.

25.

Entropy measures quantify global splicing disorders in cancer.

Ritchie W, Granjeaud S, Puthier D, Gautheret D.

PLoS Comput Biol. 2008 Mar 14;4(3):e1000011. doi: 10.1371/journal.pcbi.1000011.

26.

Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice.

Delahaye NF, Coltel N, Puthier D, Barbier M, Benech P, Joly F, Iraqi FA, Grau GE, Nguyen C, Rihet P.

BMC Genomics. 2007 Dec 6;8:452.

27.

CD8 T cell help for innate antitumor immunity.

Shanker A, Verdeil G, Buferne M, Inderberg-Suso EM, Puthier D, Joly F, Nguyen C, Leserman L, Auphan-Anezin N, Schmitt-Verhulst AM.

J Immunol. 2007 Nov 15;179(10):6651-62.

28.

High cytotoxic and specific migratory potencies of senescent CD8+ CD57+ cells in HIV-infected and uninfected individuals.

Le Priol Y, Puthier D, Lécureuil C, Combadière C, Debré P, Nguyen C, Combadière B.

J Immunol. 2006 Oct 15;177(8):5145-54.

29.

Thrombin-induced endothelial microparticle generation: identification of a novel pathway involving ROCK-II activation by caspase-2.

Sapet C, Simoncini S, Loriod B, Puthier D, Sampol J, Nguyen C, Dignat-George F, Anfosso F.

Blood. 2006 Sep 15;108(6):1868-76. Epub 2006 May 23.

PMID:
16720831
30.

STAT5-mediated signals sustain a TCR-initiated gene expression program toward differentiation of CD8 T cell effectors.

Verdeil G, Puthier D, Nguyen C, Schmitt-Verhulst AM, Auphan-Anezin N.

J Immunol. 2006 Apr 15;176(8):4834-42.

31.

Gene-expression profiling discriminates between cerebral malaria (CM)-susceptible mice and CM-resistant mice.

Delahaye NF, Coltel N, Puthier D, Flori L, Houlgatte R, Iraqi FA, Nguyen C, Grau GE, Rihet P.

J Infect Dis. 2006 Jan 15;193(2):312-21. Epub 2005 Dec 5.

PMID:
16362897
32.

Modulation of interleukin-7 receptor expression characterizes differentiation of CD8 T cells specific for HIV, EBV and CMV.

Boutboul F, Puthier D, Appay V, Pellé O, Ait-Mohand H, Combadière B, Carcelain G, Katlama C, Rowland-Jones SL, Debré P, Nguyen C, Autran B.

AIDS. 2005 Nov 18;19(17):1981-6.

PMID:
16260904
33.

A general survey of thymocyte differentiation by transcriptional analysis of knockout mouse models.

Puthier D, Joly F, Irla M, Saade M, Victorero G, Loriod B, Nguyen C.

J Immunol. 2004 Nov 15;173(10):6109-18.

34.

Genomic organization and the tissue distribution of alternatively spliced isoforms of the mouse Spatial gene.

Irla M, Puthier D, Granjeaud S, Saade M, Victorero G, Mattei MG, Nguyen C.

BMC Genomics. 2004 Jul 5;5(1):41.

35.

Spatial, a new nuclear factor tightly regulated during mouse spermatogenesis.

Irla M, Puthier D, Le Goffic R, Victorero G, Freeman T, Naquet P, Samson M, Nguyen C.

Gene Expr Patterns. 2003 May;3(2):135-8. Erratum in: Gene Expr Patterns. 2003 Aug;3(4):539.

PMID:
12711538
36.

Gene profiling approach to establish the molecular bases for partial versus full activation of naïve CD8 T lymphocytes.

Verdeil G, Puthier D, Nguyen C, Schmitt-Verhulst AM, Auphan-Anezin N.

Ann N Y Acad Sci. 2002 Dec;975:68-76.

PMID:
12538155
37.

High incidence of N and K-Ras activating mutations in multiple myeloma and primary plasma cell leukemia at diagnosis.

Bezieau S, Devilder MC, Avet-Loiseau H, Mellerin MP, Puthier D, Pennarun E, Rapp MJ, Harousseau JL, Moisan JP, Bataille R.

Hum Mutat. 2001 Sep;18(3):212-24.

PMID:
11524732
38.

IL-6 upregulates its own receptor on some human myeloma cell lines.

Thabard W, Collette M, Mellerin MP, Puthier D, Barillé S, Bataille R, Amiot M.

Cytokine. 2001 Jun 21;14(6):352-6.

PMID:
11497497
39.

Interferon alpha extends the survival of human myeloma cells through an upregulation of the Mcl-1 anti-apoptotic molecule.

Puthier D, Thabard W, Rapp M, Etrillard M, Harousseau J, Bataille R, Amiot M.

Br J Haematol. 2001 Feb;112(2):358-63.

PMID:
11167829
40.
41.

Mcl-1 and Bcl-xL are co-regulated by IL-6 in human myeloma cells.

Puthier D, Derenne S, Barillé S, Moreau P, Harousseau JL, Bataille R, Amiot M.

Br J Haematol. 1999 Nov;107(2):392-5.

PMID:
10583232
42.

Reactive plasmacytoses are expansions of plasmablasts retaining the capacity to differentiate into plasma cells.

Jego G, Robillard N, Puthier D, Amiot M, Accard F, Pineau D, Harousseau JL, Bataille R, Pellat-Deceunynck C.

Blood. 1999 Jul 15;94(2):701-12.

PMID:
10397737
43.

Differential expression of Bcl-2 in human plasma cell disorders according to proliferation status and malignancy.

Puthier D, Pellat-Deceunynck C, Barillé S, Robillard N, Rapp MJ, Juge-Morineau N, Harousseau JL, Bataille R, Amiot M.

Leukemia. 1999 Feb;13(2):289-94.

44.

The absence of CD56 (NCAM) on malignant plasma cells is a hallmark of plasma cell leukemia and of a special subset of multiple myeloma.

Pellat-Deceunynck C, Barillé S, Jego G, Puthier D, Robillard N, Pineau D, Rapp MJ, Harousseau JL, Amiot M, Bataille R.

Leukemia. 1998 Dec;12(12):1977-82.

45.

CD28, a marker associated with tumoral expansion in multiple myeloma.

Robillard N, Jego G, Pellat-Deceunynck C, Pineau D, Puthier D, Mellerin MP, Barillé S, Rapp MJ, Harousseau JL, Amiot M, Bataille R.

Clin Cancer Res. 1998 Jun;4(6):1521-6.

46.

Myeloma cell growth arrest, apoptosis, and interleukin-6 receptor modulation induced by EB1089, a vitamin D3 derivative, alone or in association with dexamethasone.

Puthier D, Bataille R, Barillé S, Mellerin MP, Harousseau JL, Ponzio A, Robillard N, Wijdenes J, Amiot M.

Blood. 1996 Dec 15;88(12):4659-66.

PMID:
8977259
47.

Adhesion molecules on human myeloma cells: significant changes in expression related to malignancy, tumor spreading, and immortalization.

Pellat-Deceunynck C, Barillé S, Puthier D, Rapp MJ, Harousseau JL, Bataille R, Amiot M.

Cancer Res. 1995 Aug 15;55(16):3647-53.

48.

The gp 130 family cytokines IL-6, LIF and OSM but not IL-11 can reverse the anti-proliferative effect of dexamethasone on human myeloma cells.

Juge-Morineau N, François S, Puthier D, Godard A, Bataille R, Amiot M.

Br J Haematol. 1995 Jul;90(3):707-10.

PMID:
7647014

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