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Items: 42

2.

Sites of persistence of Fusobacterium necrophorum and Dichelobacter nodosus: a paradigm shift in understanding the epidemiology of footrot in sheep.

Clifton R, Giebel K, Liu NLBH, Purdy KJ, Green LE.

Sci Rep. 2019 Oct 8;9(1):14429. doi: 10.1038/s41598-019-50822-9.

3.

A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments.

Jones HJ, Kröber E, Stephenson J, Mausz MA, Jameson E, Millard A, Purdy KJ, Chen Y.

Microbiome. 2019 Aug 27;7(1):120. doi: 10.1186/s40168-019-0732-4.

4.

COD/sulfate ratio does not affect the methane yield and microbial diversity in anaerobic digesters.

Cetecioglu Z, Dolfing J, Taylor J, Purdy KJ, Eyice Ö.

Water Res. 2019 May 15;155:444-454. doi: 10.1016/j.watres.2019.02.038. Epub 2019 Mar 4.

PMID:
30861382
5.

Nutrient cycling potential within microbial communities on culturally important stoneworks.

Zanardini E, May E, Purdy KJ, Murrell JC.

Environ Microbiol Rep. 2019 Apr;11(2):147-154. doi: 10.1111/1758-2229.12707. Epub 2018 Dec 25.

PMID:
30346661
6.

Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment.

Jameson E, Stephenson J, Jones H, Millard A, Kaster AK, Purdy KJ, Airs R, Murrell JC, Chen Y.

ISME J. 2019 Feb;13(2):277-289. doi: 10.1038/s41396-018-0269-8. Epub 2018 Sep 11.

7.

Interaction between Staphylococcus aureus and Pseudomonas aeruginosa is beneficial for colonisation and pathogenicity in a mixed biofilm.

Alves PM, Al-Badi E, Withycombe C, Jones PM, Purdy KJ, Maddocks SE.

Pathog Dis. 2018 Feb 1;76(1). doi: 10.1093/femspd/fty003.

PMID:
29342260
8.

Development and validation of a multiple locus variable number tandem repeat analysis (MLVA) scheme for Fusobacterium necrophorum.

Clifton R, Green LE, Purdy KJ.

Vet Microbiol. 2018 Jan;213:108-113. doi: 10.1016/j.vetmic.2017.11.017. Epub 2017 Nov 21.

9.

Draft Genome Sequence of Pseudomonas aeruginosa ATCC 9027, Originally Isolated from an Outer Ear Infection.

Jayal A, Johns BE, Purdy KJ, Maddocks SE.

Genome Announc. 2017 Nov 30;5(48). pii: e01397-17. doi: 10.1128/genomeA.01397-17.

10.

Metagenomic data-mining reveals contrasting microbial populations responsible for trimethylamine formation in human gut and marine ecosystems.

Jameson E, Doxey AC, Airs R, Purdy KJ, Murrell JC, Chen Y.

Microb Genom. 2016 Sep 20;2(9):e000080. doi: 10.1099/mgen.0.000080. eCollection 2016 Sep.

11.

Within-Flock Population Dynamics of Dichelobacter nodosus.

Smith EM, Gilbert A, Russell CL, Purdy KJ, Medley GF, Muzafar M, Grogono-Thomas R, Green LE.

Front Vet Sci. 2017 Apr 24;4:58. doi: 10.3389/fvets.2017.00058. eCollection 2017.

12.

Riverbed methanotrophy sustained by high carbon conversion efficiency.

Trimmer M, Shelley FC, Purdy KJ, Maanoja ST, Chronopoulou PM, Grey J.

ISME J. 2017 Apr;11(4):1058. doi: 10.1038/ismej.2017.9. No abstract available.

13.

Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific.

Trimmer M, Chronopoulou PM, Maanoja ST, Upstill-Goddard RC, Kitidis V, Purdy KJ.

Nat Commun. 2016 Dec 1;7:13451. doi: 10.1038/ncomms13451.

14.

Micro-management: curbing chronic wound infection.

Withycombe C, Purdy KJ, Maddocks SE.

Mol Oral Microbiol. 2017 Aug;32(4):263-274. doi: 10.1111/omi.12174. Epub 2016 Oct 3. Review.

PMID:
27516380
15.

Phenotypic and Genotypic Characteristics of Small Colony Variants and Their Role in Chronic Infection.

Johns BE, Purdy KJ, Tucker NP, Maddocks SE.

Microbiol Insights. 2015 Sep 22;8:15-23. doi: 10.4137/MBI.S25800. eCollection 2015. Review.

16.

Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis.

Jameson E, Fu T, Brown IR, Paszkiewicz K, Purdy KJ, Frank S, Chen Y.

Environ Microbiol. 2016 Sep;18(9):2886-98. doi: 10.1111/1462-2920.13059. Epub 2015 Nov 3.

17.

Riverbed methanotrophy sustained by high carbon conversion efficiency.

Trimmer M, Shelley FC, Purdy KJ, Maanoja ST, Chronopoulou PM, Grey J.

ISME J. 2015 Oct;9(10):2328. doi: 10.1038/ismej.2015.173. No abstract available.

18.

Bacterial species and their associations with acute and chronic mastitis in suckler ewes.

Smith EM, Willis ZN, Blakeley M, Lovatt F, Purdy KJ, Green LE.

J Dairy Sci. 2015 Oct;98(10):7025-33. doi: 10.3168/jds.2015-9702. Epub 2015 Aug 12.

19.

Riverbed methanotrophy sustained by high carbon conversion efficiency.

Trimmer M, Shelley FC, Purdy KJ, Maanoja ST, Chronopoulou PM, Grey J.

ISME J. 2015 Oct;9(10):2304-14. doi: 10.1038/ismej.2015.98. Epub 2015 Jun 9. Erratum in: ISME J. 2015 Oct;9(10):2328. Jonathan, Grey [corrected to Grey, Jonathan]. ISME J. 2017 Apr;11(4):1058.

20.

Metabolic flexibility as a major predictor of spatial distribution in microbial communities.

Carbonero F, Oakley BB, Purdy KJ.

PLoS One. 2014 Jan 21;9(1):e85105. doi: 10.1371/journal.pone.0085105. eCollection 2014.

21.

Manuka honey inhibits adhesion and invasion of medically important wound bacteria in vitro.

Maddocks SE, Jenkins RE, Rowlands RS, Purdy KJ, Cooper RA.

Future Microbiol. 2013 Dec;8(12):1523-36. doi: 10.2217/fmb.13.126.

PMID:
24266353
22.

A new non-degenerate primer pair for the specific detection of the nitrite reductase gene nrfA in the genus Desulfovibrio.

Giacomucci L, Purdy KJ, Zanardini E, Polo A, Cappitelli F.

J Mol Microbiol Biotechnol. 2012;22(6):345-51. doi: 10.1159/000345768. Epub 2012 Dec 28.

23.

Evidence for the direct oxidation of organic nitrogen to N2 gas in the Arabian Sea.

Trimmer M, Purdy KJ.

ISME J. 2012 Sep;6(9):1798-800. doi: 10.1038/ismej.2012.18. Epub 2012 Mar 8.

24.

Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential?

Carbonero F, Oakley BB, Hawkins RJ, Purdy KJ.

Microb Ecol. 2012 May;63(4):856-64. doi: 10.1007/s00248-011-9993-6. Epub 2011 Dec 20.

PMID:
22183047
25.

Contrasting patterns of niche partitioning between two anaerobic terminal oxidizers of organic matter.

Oakley BB, Carbonero F, Dowd SE, Hawkins RJ, Purdy KJ.

ISME J. 2012 May;6(5):905-14. doi: 10.1038/ismej.2011.165. Epub 2011 Nov 24.

26.

ThermoPhyl: a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples.

Oakley BB, Dowd SE, Purdy KJ.

FEMS Microbiol Ecol. 2011 Jul;77(1):17-27. doi: 10.1111/j.1574-6941.2011.01079.x. Epub 2011 Mar 21.

27.

The influence of 'Tall Man' lettering on errors of visual perception in the recognition of written drug names.

Darker IT, Gerret D, Filik R, Purdy KJ, Gale AG.

Ergonomics. 2011 Jan;54(1):21-33. doi: 10.1080/00140139.2010.535022.

PMID:
21181586
28.

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations.

Oakley BB, Carbonero F, van der Gast CJ, Hawkins RJ, Purdy KJ.

ISME J. 2010 Apr;4(4):488-97. doi: 10.1038/ismej.2009.146. Epub 2010 Jan 7.

PMID:
20054357
29.
30.

Improving the isolation of anaerobes on solid media: the example of the fastidious Methanosaeta.

Carbonero F, Oakley BB, Purdy KJ.

J Microbiol Methods. 2010 Feb;80(2):203-5. doi: 10.1016/j.mimet.2009.11.013. Epub 2009 Dec 4. Erratum in: J Microbiol Methods. 2010 Jul;82(1):112.

PMID:
19969029
31.

The distribution and diversity of Euryarchaeota in termite guts.

Purdy KJ.

Adv Appl Microbiol. 2007;62:63-80. Review. No abstract available.

PMID:
17869602
32.

Genotypic distribution of an indigenous model microorganism along an estuarine gradient.

Hawkins RJ, Purdy KJ.

FEMS Microbiol Ecol. 2007 Nov;62(2):187-94. Epub 2007 Sep 10.

33.

Nucleic acid recovery from complex environmental samples.

Purdy KJ.

Methods Enzymol. 2005;397:271-92.

PMID:
16260297
34.
35.

Isolation of haloarchaea that grow at low salinities.

Purdy KJ, Cresswell-Maynard TD, Nedwell DB, McGenity TJ, Grant WD, Timmis KN, Embley TM.

Environ Microbiol. 2004 Jun;6(6):591-5.

PMID:
15142247
36.
37.

Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary.

Purdy KJ, Munson MA, Cresswell-Maynard T, Nedwell DB, Embley TM.

FEMS Microbiol Ecol. 2003 Jun 1;44(3):361-71. doi: 10.1016/S0168-6496(03)00078-3.

38.

Eye movements of large populations: I. Implementation and performance of an autonomous public eye tracker.

Wooding DS, Mugglestone MD, Purdy KJ, Gale AG.

Behav Res Methods Instrum Comput. 2002 Nov;34(4):509-17.

PMID:
12564555
39.

The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments.

Purdy KJ, Embley TM, Nedwell DB.

Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):181-7. Review.

PMID:
12448716
40.

Comparison of the molecular diversity of the methanogenic community at the brackish and marine ends of a UK estuary.

Purdy KJ, Munson MA, Nedwell DB, Martin Embley T.

FEMS Microbiol Ecol. 2002 Jan 1;39(1):17-21. doi: 10.1111/j.1574-6941.2002.tb00902.x.

41.
42.

Rapid Extraction of DNA and rRNA from Sediments by a Novel Hydroxyapatite Spin-Column Method.

Purdy KJ, Embley TM, Takii S, Nedwell DB.

Appl Environ Microbiol. 1996 Oct;62(10):3905-7.

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