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Items: 37

1.

Norbornene probes for the detection of cysteine sulfenic acid in cells.

Alcock LJ, Oliveira BL, Deery MJ, Pukala TL, Perkins MV, Bernardes GJL, Chalker JM.

ACS Chem Biol. 2019 Mar 20. doi: 10.1021/acschembio.8b01104. [Epub ahead of print]

PMID:
30893551
2.

Native mass spectrometry identifies an alternative DNA-binding pathway for BirA from Staphylococcus aureus.

Satiaputra J, Sternicki LM, Hayes AJ, Pukala TL, Booker GW, Shearwin KE, Polyak SW.

Sci Rep. 2019 Feb 26;9(1):2767. doi: 10.1038/s41598-019-39398-6.

3.

C-Phycocyanin from Spirulina Inhibits α-Synuclein and Amyloid-β Fibril Formation but Not Amorphous Aggregation.

Liu Y, Jovcevski B, Pukala TL.

J Nat Prod. 2019 Jan 25;82(1):66-73. doi: 10.1021/acs.jnatprod.8b00610. Epub 2019 Jan 8.

PMID:
30620188
4.

Electron transfer ferredoxins with unusual cluster binding motifs support secondary metabolism in many bacteria.

Child SA, Bradley JM, Pukala TL, Svistunenko DA, Le Brun NE, Bell SG.

Chem Sci. 2018 Aug 23;9(41):7948-7957. doi: 10.1039/c8sc01286e. eCollection 2018 Nov 7.

5.

Meet the Associate Editors: Tara Pukala.

Pukala T.

Rapid Commun Mass Spectrom. 2018 Nov 5. doi: 10.1002/rcm.8342. [Epub ahead of print] No abstract available.

PMID:
30395697
6.

Ion Mobility-Mass Spectrometry Reveals Details of Formation and Structure for GAA·TCC DNA and RNA Triplexes.

Li J, Begbie A, Boehm BJ, Button A, Whidborne C, Pouferis Y, Huang DM, Pukala TL.

J Am Soc Mass Spectrom. 2019 Jan;30(1):103-112. doi: 10.1007/s13361-018-2077-9. Epub 2018 Oct 19. Erratum in: J Am Soc Mass Spectrom. 2019 Feb 11;:.

PMID:
30341580
7.

Conditions for Analysis of Native Protein Structures Using Uniform Field Drift Tube Ion Mobility Mass Spectrometry and Characterization of Stable Calibrants for TWIM-MS.

Harrison JA, Kelso C, Pukala TL, Beck JL.

J Am Soc Mass Spectrom. 2019 Feb;30(2):256-267. doi: 10.1007/s13361-018-2074-z. Epub 2018 Oct 15.

PMID:
30324262
8.

Importance of collision cross section measurements by ion mobility mass spectrometry in structural biology.

Pukala T.

Rapid Commun Mass Spectrom. 2018 Sep 28. doi: 10.1002/rcm.8294. [Epub ahead of print]

PMID:
30265417
9.

PPARγ in Complex with an Antagonist and Inverse Agonist: a Tumble and Trap Mechanism of the Activation Helix.

Frkic RL, Marshall AC, Blayo AL, Pukala TL, Kamenecka TM, Griffin PR, Bruning JB.

iScience. 2018 Feb 27;5:69-79. doi: 10.1016/j.isci.2018.06.012. Epub 2018 Jul 2.

10.

The Human Amyloid Precursor Protein Binds Copper Ions Dominated by a Picomolar-Affinity Site in the Helix-Rich E2 Domain.

Young TR, Pukala TL, Cappai R, Wedd AG, Xiao Z.

Biochemistry. 2018 Jul 17;57(28):4165-4176. doi: 10.1021/acs.biochem.8b00572. Epub 2018 Jun 26.

PMID:
29894164
11.

Exploring the Structural Diversity in Inhibitors of α-Synuclein Amyloidogenic Folding, Aggregation, and Neurotoxicity.

Das S, Pukala TL, Smid SD.

Front Chem. 2018 May 25;6:181. doi: 10.3389/fchem.2018.00181. eCollection 2018.

12.

DNA triplex structure, thermodynamics, and destabilisation: insight from molecular simulations.

Boehm BJ, Whidborne C, Button AL, Pukala TL, Huang DM.

Phys Chem Chem Phys. 2018 May 23;20(20):14013-14023. doi: 10.1039/c8cp02385a.

PMID:
29744501
13.

Bioactive polyphenol interactions with β amyloid: a comparison of binding modelling, effects on fibril and aggregate formation and neuroprotective capacity.

Das S, Stark L, Musgrave IF, Pukala T, Smid SD.

Food Funct. 2016 Feb;7(2):1138-46. doi: 10.1039/c5fo01281c.

PMID:
26815043
14.

The Amyloid Fibril-Forming Properties of the Amphibian Antimicrobial Peptide Uperin 3.5.

Calabrese AN, Liu Y, Wang T, Musgrave IF, Pukala TL, Tabor RF, Martin LL, Carver JA, Bowie JH.

Chembiochem. 2016 Feb 2;17(3):239-46. doi: 10.1002/cbic.201500518. Epub 2015 Dec 16.

PMID:
26676975
15.

Ion mobility-mass spectrometry-based screening for inhibition of α- synuclein aggregation.

Liu Y, Graetz M, Ho L, Pukala TL.

Eur J Mass Spectrom (Chichester). 2015;21(3):255-64. doi: 10.1255/ejms.1359.

PMID:
26307705
16.

Hemin as a generic and potent protein misfolding inhibitor.

Liu Y, Carver JA, Ho LH, Elias AK, Musgrave IF, Pukala TL.

Biochem Biophys Res Commun. 2014 Nov 14;454(2):295-300. doi: 10.1016/j.bbrc.2014.10.062. Epub 2014 Oct 18.

PMID:
25450392
17.

Structural analysis of calmodulin binding by nNOS inhibitory amphibian peptides.

Calabrese AN, Bowie JH, Pukala TL.

Biochemistry. 2015 Jan 20;54(2):567-76. doi: 10.1021/bi5004124. Epub 2014 Dec 30.

PMID:
25436860
18.

Gallic acid interacts with α-synuclein to prevent the structural collapse necessary for its aggregation.

Liu Y, Carver JA, Calabrese AN, Pukala TL.

Biochim Biophys Acta. 2014 Sep;1844(9):1481-5. doi: 10.1016/j.bbapap.2014.04.013. Epub 2014 Apr 25.

PMID:
24769497
19.

Gallic acid is the major component of grape seed extract that inhibits amyloid fibril formation.

Liu Y, Pukala TL, Musgrave IF, Williams DM, Dehle FC, Carver JA.

Bioorg Med Chem Lett. 2013 Dec 1;23(23):6336-40. doi: 10.1016/j.bmcl.2013.09.071. Epub 2013 Oct 1.

PMID:
24157371
20.

Novel insights into protein misfolding diseases revealed by ion mobility-mass spectrometry.

Williams DM, Pukala TL.

Mass Spectrom Rev. 2013 May-Jun;32(3):169-87. doi: 10.1002/mas.21358. Epub 2013 Jan 23. Review.

PMID:
23345084
21.

Using a fragment-based approach to target protein-protein interactions.

Scott DE, Ehebauer MT, Pukala T, Marsh M, Blundell TL, Venkitaraman AR, Abell C, Hyvönen M.

Chembiochem. 2013 Feb 11;14(3):332-42. doi: 10.1002/cbic.201200521. Epub 2013 Jan 23.

22.

Negative ion fragmentations of disulfide-containing cross-linking reagents are competitive with aspartic acid side-chain-induced cleavages.

Calabrese AN, Wang T, Bowie JH, Pukala TL.

Rapid Commun Mass Spectrom. 2013 Jan 15;27(1):238-48. doi: 10.1002/rcm.6445.

PMID:
23239338
23.

Utility of an improved model of amyloid-beta (Aβ₁₋₄₂) toxicity in Caenorhabditis elegans for drug screening for Alzheimer's disease.

McColl G, Roberts BR, Pukala TL, Kenche VB, Roberts CM, Link CD, Ryan TM, Masters CL, Barnham KJ, Bush AI, Cherny RA.

Mol Neurodegener. 2012 Nov 21;7:57. doi: 10.1186/1750-1326-7-57.

24.

A negative ion mass spectrometry approach to identify cross-linked peptides utilizing characteristic disulfide fragmentations.

Calabrese AN, Good NJ, Wang T, He J, Bowie JH, Pukala TL.

J Am Soc Mass Spectrom. 2012 Aug;23(8):1364-75. doi: 10.1007/s13361-012-0407-x. Epub 2012 May 30.

PMID:
22644737
25.

Histidine-containing host-defence skin peptides of anurans bind Cu2+. An electrospray ionisation mass spectrometry and computational modelling study.

Wang T, Andreazza HJ, Pukala TL, Sherman PJ, Calabrese AN, Bowie JH.

Rapid Commun Mass Spectrom. 2011 May 15;25(9):1209-21. doi: 10.1002/rcm.4981.

PMID:
21488120
26.

Aβ40 and Aβ42 amyloid fibrils exhibit distinct molecular recycling properties.

Sánchez L, Madurga S, Pukala T, Vilaseca M, López-Iglesias C, Robinson CV, Giralt E, Carulla N.

J Am Chem Soc. 2011 May 4;133(17):6505-8. doi: 10.1021/ja1117123. Epub 2011 Apr 12.

PMID:
21486030
27.

Skin peptide and cDNA profiling of Australian anurans: genus and species identification and evolutionary trends.

Jackway RJ, Pukala TL, Donnellan SC, Sherman PJ, Tyler MJ, Bowie JH.

Peptides. 2011 Jan;32(1):161-72. doi: 10.1016/j.peptides.2010.09.019. Epub 2010 Oct 13. Review.

PMID:
20932866
28.

Subunit architecture of multiprotein assemblies determined using restraints from gas-phase measurements.

Pukala TL, Ruotolo BT, Zhou M, Politis A, Stefanescu R, Leary JA, Robinson CV.

Structure. 2009 Sep 9;17(9):1235-43. doi: 10.1016/j.str.2009.07.013.

29.

Binding studies of nNOS-active amphibian peptides and Ca2+ calmodulin, using negative ion electrospray ionisation mass spectrometry.

Pukala TL, Urathamakul T, Watt SJ, Beck JL, Jackway RJ, Bowie JH.

Rapid Commun Mass Spectrom. 2008 Nov;22(22):3501-9. doi: 10.1002/rcm.3757.

PMID:
18853393
30.

Effect of antimicrobial peptides from Australian tree frogs on anionic phospholipid membranes.

Gehman JD, Luc F, Hall K, Lee TH, Boland MP, Pukala TL, Bowie JH, Aguilar MI, Separovic F.

Biochemistry. 2008 Aug 19;47(33):8557-65. doi: 10.1021/bi800320v. Epub 2008 Jul 25.

PMID:
18652483
31.

Disulfide-containing peptides from the glandular skin secretions of froglets of the genus Crinia: structure, activity and evolutionary trends.

Jackway RJ, Pukala TL, Maselli VM, Musgrave IF, Bowie JH, Liu Y, Surinya-Johnson KH, Donnellan SC, Doyle JR, Llewellyn LE, Tyler MJ.

Regul Pept. 2008 Nov 29;151(1-3):80-7. doi: 10.1016/j.regpep.2008.06.004. Epub 2008 Jun 17.

PMID:
18601958
32.

Solution structure and interaction of cupiennin 1a, a spider venom peptide, with phospholipid bilayers.

Pukala TL, Boland MP, Gehman JD, Kuhn-Nentwig L, Separovic F, Bowie JH.

Biochemistry. 2007 Mar 20;46(11):3576-85. Epub 2007 Feb 24.

PMID:
17319697
33.

Cupiennin 1a, an antimicrobial peptide from the venom of the neotropical wandering spider Cupiennius salei, also inhibits the formation of nitric oxide by neuronal nitric oxide synthase.

Pukala TL, Doyle JR, Llewellyn LE, Kuhn-Nentwig L, Apponyi MA, Separovic F, Bowie JH.

FEBS J. 2007 Apr;274(7):1778-84. Epub 2007 Feb 22.

34.

Host-defence peptide profiles of the skin secretions of interspecific hybrid tree frogs and their parents, female Litoria splendida and male Litoria caerulea.

Pukala TL, Bertozzi T, Donnellan SC, Bowie JH, Surinya-Johnson KH, Liu Y, Jackway RJ, Doyle JR, Llewellyn LE, Tyler MJ.

FEBS J. 2006 Aug;273(15):3511-9. Epub 2006 Jul 5.

35.

Host-defence peptides from the glandular secretions of amphibians: structure and activity.

Pukala TL, Bowie JH, Maselli VM, Musgrave IF, Tyler MJ.

Nat Prod Rep. 2006 Jun;23(3):368-93. Epub 2006 Mar 31. Review. No abstract available.

PMID:
16741585
36.

Host-defence peptides of Australian anurans: structure, mechanism of action and evolutionary significance.

Apponyi MA, Pukala TL, Brinkworth CS, Maselli VM, Bowie JH, Tyler MJ, Booker GW, Wallace JC, Carver JA, Separovic F, Doyle J, Llewellyn LE.

Peptides. 2004 Jun;25(6):1035-54. Review.

PMID:
15203252
37.

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