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Items: 17

1.

Relating Structure and Dynamics in RNA Biology.

Larsen KP, Choi J, Prabhakar A, Puglisi EV, Puglisi JD.

Cold Spring Harb Perspect Biol. 2019 Jul 1;11(7). pii: a032474. doi: 10.1101/cshperspect.a032474. Review.

PMID:
31262948
2.

Expanding single-molecule fluorescence spectroscopy to capture complexity in biology.

Choi J, Grosely R, Puglisi EV, Puglisi JD.

Curr Opin Struct Biol. 2019 Jun 15. pii: S0959-440X(18)30129-5. doi: 10.1016/j.sbi.2019.05.005. [Epub ahead of print] Review.

PMID:
31213390
3.

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R.

Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30.

PMID:
30377372
4.

Dynamic Interplay of RNA and Protein in the Human Immunodeficiency Virus-1 Reverse Transcription Initiation Complex.

Coey AT, Larsen KP, Choi J, Barrero DJ, Puglisi JD, Puglisi EV.

J Mol Biol. 2018 Dec 7;430(24):5137-5150. doi: 10.1016/j.jmb.2018.08.029. Epub 2018 Sep 7.

PMID:
30201267
5.

Single-Molecule Fluorescence Applied to Translation.

Prabhakar A, Puglisi EV, Puglisi JD.

Cold Spring Harb Perspect Biol. 2019 Jan 2;11(1). pii: a032714. doi: 10.1101/cshperspect.a032714. Review.

6.

Architecture of an HIV-1 reverse transcriptase initiation complex.

Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV.

Nature. 2018 May;557(7703):118-122. doi: 10.1038/s41586-018-0055-9. Epub 2018 Apr 25.

7.

The molecular choreography of protein synthesis: translational control, regulation, and pathways.

Chen J, Choi J, O'Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD.

Q Rev Biophys. 2016 Jan;49:e11. Epub 2016 Jun 24.

PMID:
27658712
8.

Amino acid sequence repertoire of the bacterial proteome and the occurrence of untranslatable sequences.

Navon SP, Kornberg G, Chen J, Schwartzman T, Tsai A, Puglisi EV, Puglisi JD, Adir N.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7166-70. doi: 10.1073/pnas.1606518113. Epub 2016 Jun 15.

9.

Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II.

Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H.

Nat Methods. 2016 Jan;13(1):59-62. doi: 10.1038/nmeth.3667. Epub 2015 Nov 30.

10.

RNA purification by preparative polyacrylamide gel electrophoresis.

Petrov A, Wu T, Puglisi EV, Puglisi JD.

Methods Enzymol. 2013;530:315-30. doi: 10.1016/B978-0-12-420037-1.00017-8.

PMID:
24034329
11.

The impact of aminoglycosides on the dynamics of translation elongation.

Tsai A, Uemura S, Johansson M, Puglisi EV, Marshall RA, Aitken CE, Korlach J, Ehrenberg M, Puglisi JD.

Cell Rep. 2013 Feb 21;3(2):497-508. doi: 10.1016/j.celrep.2013.01.027. Epub 2013 Feb 14.

12.

Secondary structure of the HIV reverse transcription initiation complex by NMR.

Puglisi EV, Puglisi JD.

J Mol Biol. 2011 Jul 29;410(5):863-74. doi: 10.1016/j.jmb.2011.04.024.

13.

Purification and characterization of transcribed RNAs using gel filtration chromatography.

McKenna SA, Kim I, Puglisi EV, Lindhout DA, Aitken CE, Marshall RA, Puglisi JD.

Nat Protoc. 2007;2(12):3270-7.

PMID:
18079727
14.

Probing the conformation of human tRNA(3)(Lys) in solution by NMR.

Puglisi EV, Puglisi JD.

FEBS Lett. 2007 Nov 13;581(27):5307-14. Epub 2007 Oct 24.

15.

HIV-1 A-rich RNA loop mimics the tRNA anticodon structure.

Puglisi EV, Puglisi JD.

Nat Struct Biol. 1998 Dec;5(12):1033-6.

PMID:
9846871
16.

Structure of a conserved RNA component of the peptidyl transferase centre.

Puglisi EV, Green R, Noller HF, Puglisi JD.

Nat Struct Biol. 1997 Oct;4(10):775-8.

PMID:
9334738
17.

NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end.

Puglisi EV, Puglisi JD, Williamson JR, RajBhandary UL.

Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11467-71.

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