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Items: 1 to 50 of 73

1.

Relating Structure and Dynamics in RNA Biology.

Larsen KP, Choi J, Prabhakar A, Puglisi EV, Puglisi JD.

Cold Spring Harb Perspect Biol. 2019 Jul 1;11(7). pii: a032474. doi: 10.1101/cshperspect.a032474. Review.

PMID:
31262948
2.

Expanding single-molecule fluorescence spectroscopy to capture complexity in biology.

Choi J, Grosely R, Puglisi EV, Puglisi JD.

Curr Opin Struct Biol. 2019 Jun 15. pii: S0959-440X(18)30129-5. doi: 10.1016/j.sbi.2019.05.005. [Epub ahead of print] Review.

PMID:
31213390
3.

Genome Sequence Announcement of Lactobacillus vaginalis LMG S-26419, Isolated from a Healthy Woman.

Puglisi E, Galletti S, Sagheddu V, Elli M.

Microbiol Resour Announc. 2019 Feb 21;8(8). pii: e01534-18. doi: 10.1128/MRA.01534-18. eCollection 2019 Feb.

4.

Prebiotic supplementation over a cold season and during antibiotic treatment specifically modulates the gut microbiota composition of 3-6 year-old children.

Soldi S, Vasileiadis S, Lohner S, Uggeri F, Puglisi E, Molinari P, Donner E, Sieland C, Decsi T, Sailer M, Theis S.

Benef Microbes. 2019 Apr 19;10(3):253-263. doi: 10.3920/BM2018.0116. Epub 2019 Feb 19.

PMID:
30776899
5.

Molecular and Microbiological Insights on the Enrichment Procedures for the Isolation of Petroleum Degrading Bacteria and Fungi.

Spini G, Spina F, Poli A, Blieux AL, Regnier T, Gramellini C, Varese GC, Puglisi E.

Front Microbiol. 2018 Oct 30;9:2543. doi: 10.3389/fmicb.2018.02543. eCollection 2018.

6.

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R.

Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30.

PMID:
30377372
7.

Dynamic Interplay of RNA and Protein in the Human Immunodeficiency Virus-1 Reverse Transcription Initiation Complex.

Coey AT, Larsen KP, Choi J, Barrero DJ, Puglisi JD, Puglisi EV.

J Mol Biol. 2018 Dec 7;430(24):5137-5150. doi: 10.1016/j.jmb.2018.08.029. Epub 2018 Sep 7.

PMID:
30201267
8.

Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms.

Vasileiadis S, Puglisi E, Papadopoulou ES, Pertile G, Suciu N, Pappolla RA, Tourna M, Karas PA, Papadimitriou F, Kasiotakis A, Ipsilanti N, Ferrarini A, Sułowicz S, Fornasier F, Menkissoglu-Spiroudi U, Nicol GW, Trevisan M, Karpouzas DG.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01536-18. doi: 10.1128/AEM.01536-18. Print 2018 Nov 15.

9.

Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).

Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P.

Syst Appl Microbiol. 2018 Nov;41(6):593-603. doi: 10.1016/j.syapm.2018.07.005. Epub 2018 Aug 23.

PMID:
30150092
10.

Single-Molecule Fluorescence Applied to Translation.

Prabhakar A, Puglisi EV, Puglisi JD.

Cold Spring Harb Perspect Biol. 2019 Jan 2;11(1). pii: a032714. doi: 10.1101/cshperspect.a032714. Review.

11.

Architecture of an HIV-1 reverse transcriptase initiation complex.

Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV.

Nature. 2018 May;557(7703):118-122. doi: 10.1038/s41586-018-0055-9. Epub 2018 Apr 25.

12.

Modulation of microbial consortia enriched from different polluted environments during petroleum biodegradation.

Omrani R, Spini G, Puglisi E, Saidane D.

Biodegradation. 2018 Apr;29(2):187-209. doi: 10.1007/s10532-018-9823-3. Epub 2018 Feb 28.

PMID:
29492776
13.

Genome Sequence of Azospirillum brasilense REC3, Isolated from Strawberry Plants.

Fontana CA, Salazar SM, Bassi D, Puglisi E, Lovaisa N, Toffoli LM, Pedraza R, Cocconcelli PS.

Genome Announc. 2018 Feb 22;6(8). pii: e00089-18. doi: 10.1128/genomeA.00089-18.

14.

Draft Genome Sequences of Strains TRE 1, TRE D, TRE H, and TRI 7, Isolated from Tamarins and Belonging to Four Putative Novel Bifidobacterium Species.

Puglisi E, Mattarelli P, Modesto M, Bonetti A, Spiezio C, Sandri C, Morelli L.

Genome Announc. 2018 Jan 18;6(3). pii: e01449-17. doi: 10.1128/genomeA.01449-17.

15.

Gut microbiota profile in systemic sclerosis patients with and without clinical evidence of gastrointestinal involvement.

Patrone V, Puglisi E, Cardinali M, Schnitzler TS, Svegliati S, Festa A, Gabrielli A, Morelli L.

Sci Rep. 2017 Nov 1;7(1):14874. doi: 10.1038/s41598-017-14889-6.

16.

The molecular choreography of protein synthesis: translational control, regulation, and pathways.

Chen J, Choi J, O'Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD.

Q Rev Biophys. 2016 Jan;49:e11. Epub 2016 Jun 24.

PMID:
27658712
17.

Detailed analyses of the bacterial populations in processed cocoa beans of different geographic origin, subject to varied fermentation conditions.

Bortolini C, Patrone V, Puglisi E, Morelli L.

Int J Food Microbiol. 2016 Nov 7;236:98-106. doi: 10.1016/j.ijfoodmicro.2016.07.004. Epub 2016 Jul 8.

PMID:
27458718
18.

Effects of geographic area, feedstock, temperature, and operating time on microbial communities of six full-scale biogas plants.

Fontana A, Patrone V, Puglisi E, Morelli L, Bassi D, Garuti M, Rossi L, Cappa F.

Bioresour Technol. 2016 Oct;218:980-90. doi: 10.1016/j.biortech.2016.07.058. Epub 2016 Jul 15.

19.

Microbial ecology involved in the ripening of naturally fermented llama meat sausages. A focus on lactobacilli diversity.

Fontana C, Bassi D, López C, Pisacane V, Otero MC, Puglisi E, Rebecchi A, Cocconcelli PS, Vignolo G.

Int J Food Microbiol. 2016 Nov 7;236:17-25. doi: 10.1016/j.ijfoodmicro.2016.07.002. Epub 2016 Jul 12.

PMID:
27434177
20.

Infant Early Gut Colonization by Lachnospiraceae: High Frequency of Ruminococcus gnavus.

Sagheddu V, Patrone V, Miragoli F, Puglisi E, Morelli L.

Front Pediatr. 2016 Jun 2;4:57. doi: 10.3389/fped.2016.00057. eCollection 2016.

21.

Amino acid sequence repertoire of the bacterial proteome and the occurrence of untranslatable sequences.

Navon SP, Kornberg G, Chen J, Schwartzman T, Tsai A, Puglisi EV, Puglisi JD, Adir N.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7166-70. doi: 10.1073/pnas.1606518113. Epub 2016 Jun 15.

22.

Erratum for Fontana et al., Genome Sequence of Acidovorax avenae Strain T10_61 Associated with Sugarcane Red Stripe in Argentina.

Fontana PD, Fontana CA, Bassi D, Puglisi E, Salazar SM, Vignolo GM, Cocconcelli PS.

Genome Announc. 2016 Mar 17;4(2). pii: e00202-16. doi: 10.1128/genomeA.00202-16. No abstract available.

23.

Genome Sequence of Acidovorax avenae Strain T10_61 Associated with Sugarcane Red Stripe in Argentina.

Fontana PD, Fontana CA, Bassi D, Puglisi E, Salazar SM, Vignolo GM, Coccocelli PS.

Genome Announc. 2016 Feb 4;4(1). pii: e01669-15. doi: 10.1128/genomeA.01669-15. Erratum in: Genome Announc. 2016;4(2). pii: e00202-16. doi: 10.1128/genomeA.00202-16.

24.

Transcriptome analysis of Bacillus thuringiensis spore life, germination and cell outgrowth in a vegetable-based food model.

Bassi D, Colla F, Gazzola S, Puglisi E, Delledonne M, Cocconcelli PS.

Food Microbiol. 2016 May;55:73-85. doi: 10.1016/j.fm.2015.11.006. Epub 2015 Nov 12.

PMID:
26742618
25.

Mutations in rpoB sequences of Actinobacteria: a confounding factor in conjugal transfer experiments.

Puglisi E, Guerrieri MC, Morelli L.

Int J Antimicrob Agents. 2016 Jan;47(1):105-6. doi: 10.1016/j.ijantimicag.2015.11.003. Epub 2015 Nov 26. No abstract available.

PMID:
26701821
26.

Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II.

Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H.

Nat Methods. 2016 Jan;13(1):59-62. doi: 10.1038/nmeth.3667. Epub 2015 Nov 30.

27.

Changes in soil bacterial communities and diversity in response to long-term silver exposure.

Vasileiadis S, Puglisi E, Trevisan M, Scheckel KG, Langdon KA, McLaughlin MJ, Lombi E, Donner E.

FEMS Microbiol Ecol. 2015 Oct;91(10). pii: fiv114. doi: 10.1093/femsec/fiv114. Epub 2015 Sep 20.

PMID:
26391377
28.

Understanding the bacterial communities of hard cheese with blowing defect.

Bassi D, Puglisi E, Cocconcelli PS.

Food Microbiol. 2015 Dec;52:106-18. doi: 10.1016/j.fm.2015.07.004. Epub 2015 Jul 8.

PMID:
26338123
29.

High-throughput assessment of bacterial ecology in hog, cow and ovine casings used in sausages production.

Rebecchi A, Pisacane V, Miragoli F, Polka J, Falasconi I, Morelli L, Puglisi E.

Int J Food Microbiol. 2015 Nov 6;212:49-59. doi: 10.1016/j.ijfoodmicro.2015.04.047. Epub 2015 May 7.

PMID:
26003605
30.

Microbial analyses of traditional Italian salami reveal microorganisms transfer from the natural casing to the meat matrix.

Pisacane V, Callegari ML, Puglisi E, Dallolio G, Rebecchi A.

Int J Food Microbiol. 2015 Aug 17;207:57-65. doi: 10.1016/j.ijfoodmicro.2015.04.029. Epub 2015 Apr 24.

PMID:
26001060
31.

Manganese and iron as structuring parameters of microbial communities in Arctic marine sediments from the Baffin Bay.

Algora C, Vasileiadis S, Wasmund K, Trevisan M, Krüger M, Puglisi E, Adrian L.

FEMS Microbiol Ecol. 2015 Jun;91(6). pii: fiv056. doi: 10.1093/femsec/fiv056. Epub 2015 May 19.

PMID:
25994158
32.

Bacterial diversity in typical Italian salami at different ripening stages as revealed by high-throughput sequencing of 16S rRNA amplicons.

Połka J, Rebecchi A, Pisacane V, Morelli L, Puglisi E.

Food Microbiol. 2015 Apr;46:342-356. doi: 10.1016/j.fm.2014.08.023. Epub 2014 Sep 9. Erratum in: Food Microbiol. 2015 Jun;48:191.

PMID:
25475305
33.

Bacterial diversity in a contaminated Alpine glacier as determined by culture-based and molecular approaches.

Cappa F, Suciu N, Trevisan M, Ferrari S, Puglisi E, Cocconcelli PS.

Sci Total Environ. 2014 Nov 1;497-498:50-59. doi: 10.1016/j.scitotenv.2014.07.094. Epub 2014 Aug 10.

PMID:
25117971
34.

Draft Genome Sequence of Vancomycin-Heteroresistant Staphylococcus epidermidis Strain UC7032, Isolated from Food.

Gazzola S, Pietta E, Bassi D, Fontana C, Puglisi E, Cappa F, Cocconcelli PS.

Genome Announc. 2013 Sep 26;1(5). pii: e00709-13. doi: 10.1128/genomeA.00709-13.

35.

RNA purification by preparative polyacrylamide gel electrophoresis.

Petrov A, Wu T, Puglisi EV, Puglisi JD.

Methods Enzymol. 2013;530:315-30. doi: 10.1016/B978-0-12-420037-1.00017-8.

PMID:
24034329
36.

Draft Genome Sequence of Clostridium tyrobutyricum Strain UC7086, Isolated from Grana Padano Cheese with Late-Blowing Defect.

Bassi D, Fontana C, Gazzola S, Pietta E, Puglisi E, Cappa F, Cocconcelli PS.

Genome Announc. 2013 Aug 15;1(4). pii: e00614-13. doi: 10.1128/genomeA.00614-13.

37.

Arterial hypertension and cancer.

Milan A, Puglisi E, Ferrari L, Bruno G, Losano I, Veglio F.

Int J Cancer. 2014 May 15;134(10):2269-77. doi: 10.1002/ijc.28334. Epub 2013 Jul 31. Review.

38.

Soil microbial diversity patterns of a lowland spring environment.

Vasileiadis S, Puglisi E, Arena M, Cappa F, van Veen JA, Cocconcelli PS, Trevisan M.

FEMS Microbiol Ecol. 2013 Nov;86(2):172-84. doi: 10.1111/1574-6941.12150. Epub 2013 Jun 19.

39.

EUROSOIL 2012 bioremediation session: preface to special issue.

Puglisi E, Trevisan M, Grotenhuis T, Adrian L.

Biodegradation. 2013 Jul;24(4):451-3. doi: 10.1007/s10532-013-9649-y. Epub 2013 May 26. No abstract available.

PMID:
23708971
40.

The impact of aminoglycosides on the dynamics of translation elongation.

Tsai A, Uemura S, Johansson M, Puglisi EV, Marshall RA, Aitken CE, Korlach J, Ehrenberg M, Puglisi JD.

Cell Rep. 2013 Feb 21;3(2):497-508. doi: 10.1016/j.celrep.2013.01.027. Epub 2013 Feb 14.

41.

Soil bacterial diversity screening using single 16S rRNA gene V regions coupled with multi-million read generating sequencing technologies.

Vasileiadis S, Puglisi E, Arena M, Cappa F, Cocconcelli PS, Trevisan M.

PLoS One. 2012;7(8):e42671. doi: 10.1371/journal.pone.0042671. Epub 2012 Aug 6. Erratum in: PLoS One. 2012;7(8): doi/10.1371/annotation/bf36b938-523b-4c9f-ae86-16db7e8d39c1.

42.

Echocardiographic abnormalities in the assessment of cardiac organ damage in never-treated hypertensive patients.

Milan A, Avenatti E, Puglisi E, Abram S, Magnino C, Naso D, Tosello F, Fabbri A, Vairo A, Mulatero P, Rabbia F, Veglio F.

Clin Exp Hypertens. 2012;34(7):463-9. doi: 10.3109/10641963.2011.618205. Epub 2012 Jun 27.

PMID:
22738434
43.

Response of ammonia oxidizing bacteria and archaea to acute zinc stress and different moisture regimes in soil.

Vasileiadis S, Coppolecchia D, Puglisi E, Balloi A, Mapelli F, Hamon RE, Daffonchio D, Trevisan M.

Microb Ecol. 2012 Nov;64(4):1028-37. doi: 10.1007/s00248-012-0081-3. Epub 2012 Jun 12.

PMID:
22688860
44.

Impact of fungicides on the diversity and function of non-target ammonia-oxidizing microorganisms residing in a litter soil cover.

Puglisi E, Vasileiadis S, Demiris K, Bassi D, Karpouzas DG, Capri E, Cocconcelli PS, Trevisan M.

Microb Ecol. 2012 Oct;64(3):692-701. Epub 2012 May 15.

PMID:
22584298
45.

Combinations of renin-angiotensin-aldosterone system antagonists: true advantages?

Veglio F, Puglisi E, Milan A, Mulatero P.

Curr Pharm Des. 2012;18(7):952-7. Review.

46.

Left atrial enlargement in essential hypertension: role in the assessment of subclinical hypertensive heart disease.

Milan A, Puglisi E, Magnino C, Naso D, Abram S, Avenatti E, Rabbia F, Mulatero P, Veglio F.

Blood Press. 2012 Apr;21(2):88-96. doi: 10.3109/08037051.2011.617098. Epub 2011 Oct 13.

PMID:
21992014
47.

Secondary structure of the HIV reverse transcription initiation complex by NMR.

Puglisi EV, Puglisi JD.

J Mol Biol. 2011 Jul 29;410(5):863-74. doi: 10.1016/j.jmb.2011.04.024.

48.

[Hypertensive emergency and urgency: clinical update].

Milan A, Puglisi E, Ferrari G, Fabbri A, Rabbia F, Mulatero P, Veglio F.

G Ital Cardiol (Rome). 2010 Nov;11(11):835-48. Review. Italian.

PMID:
21348321
49.

Aortic size index enlargement is associated with central hemodynamics in essential hypertension.

Milan A, Tosello F, Caserta M, Naso D, Puglisi E, Magnino C, Comoglio C, Rabbia F, Mulatero P, Veglio F.

Hypertens Res. 2011 Jan;34(1):126-32. doi: 10.1038/hr.2010.185. Epub 2010 Sep 30.

PMID:
20882032
50.

Soil monitoring of pentachlorophenol by bioavailability and ecotoxicity measurements.

Spagnuolo M, Puglisi E, Vernile P, Bari G, de Lillo E, Trevisan M, Ruggiero P.

J Environ Monit. 2010 Aug 5;12(8):1575-81. doi: 10.1039/b925026c. Epub 2010 Jun 24.

PMID:
20574577

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