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Items: 17


A Partially Phase-Separated Genome Sequence Assembly of the Vitis Rootstock 'Börner' (Vitis riparia × Vitis cinerea) and Its Exploitation for Marker Development and Targeted Mapping.

Holtgräwe D, Rosleff Soerensen T, Hausmann L, Pucker B, Viehöver P, Töpfer R, Weisshaar B.

Front Plant Sci. 2020 Mar 4;11:156. doi: 10.3389/fpls.2020.00156. eCollection 2020.


High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing.

Siadjeu C, Pucker B, Viehöver P, Albach DC, Weisshaar B.

Genes (Basel). 2020 Mar 4;11(3). pii: E274. doi: 10.3390/genes11030274.


Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Sites.

Frey K, Pucker B.

Cells. 2020 Feb 18;9(2). pii: E458. doi: 10.3390/cells9020458.


Genome Sequencing of Musa acuminata Dwarf Cavendish Reveals a Duplication of a Large Segment of Chromosome 2.

Busche M, Pucker B, Viehöver P, Weisshaar B, Stracke R.

G3 (Bethesda). 2020 Jan 7;10(1):37-42. doi: 10.1534/g3.119.400847.


Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome.

Pucker B, Rückert C, Stracke R, Viehöver P, Kalinowski J, Weisshaar B.

Genes (Basel). 2019 Sep 2;10(9). pii: E671. doi: 10.3390/genes10090671.


Evolution of l-DOPA 4,5-dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales.

Sheehan H, Feng T, Walker-Hale N, Lopez-Nieves S, Pucker B, Guo R, Yim WC, Badgami R, Timoneda A, Zhao L, Tiley H, Copetti D, Sanderson MJ, Cushman JC, Moore MJ, Smith SA, Brockington SF.

New Phytol. 2019 Aug 1. doi: 10.1111/nph.16089. [Epub ahead of print]


The evolution of betalain biosynthesis in Caryophyllales.

Timoneda A, Feng T, Sheehan H, Walker-Hale N, Pucker B, Lopez-Nieves S, Guo R, Brockington S.

New Phytol. 2019 Oct;224(1):71-85. doi: 10.1111/nph.15980. Epub 2019 Jul 19. Review.


Integrating Molecular Biology and Bioinformatics Education.

Pucker B, Schilbert HM, Schumacher SF.

J Integr Bioinform. 2019 May 30;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0005/jib-2019-0005.xml. doi: 10.1515/jib-2019-0005.


A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set.

Pucker B, Holtgräwe D, Stadermann KB, Frey K, Huettel B, Reinhardt R, Weisshaar B.

PLoS One. 2019 May 21;14(5):e0216233. doi: 10.1371/journal.pone.0216233. eCollection 2019.


Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomes.

Pucker B, Brockington SF.

BMC Genomics. 2018 Dec 29;19(1):980. doi: 10.1186/s12864-018-5360-z.


Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA.

Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P.

J Integr Bioinform. 2018 Sep 15;15(3). pii: /j/jib.2018.15.issue-3/jib-2018-0018/jib-2018-0018.xml. doi: 10.1515/jib-2018-0018.


Auxotrophy to Xeno-DNA: an exploration of combinatorial mechanisms for a high-fidelity biosafety system for synthetic biology applications.

Whitford CM, Dymek S, Kerkhoff D, März C, Schmidt O, Edich M, Droste J, Pucker B, Rückert C, Kalinowski J.

J Biol Eng. 2018 Aug 14;12:13. doi: 10.1186/s13036-018-0105-8. eCollection 2018. Review.


High Quality de Novo Transcriptome Assembly of Croton tiglium.

Haak M, Vinke S, Keller W, Droste J, Rückert C, Kalinowski J, Pucker B.

Front Mol Biosci. 2018 Jul 5;5:62. doi: 10.3389/fmolb.2018.00062. eCollection 2018. No abstract available.


Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.

Pucker B, Holtgräwe D, Weisshaar B.

BMC Res Notes. 2017 Dec 4;10(1):667. doi: 10.1186/s13104-017-2985-y.


Refined annotation of the complete genome of the phytopathogenic and xanthan producing Xanthomonas campestris pv. campestris strain B100 based on RNA sequence data.

Alkhateeb RS, Rückert C, Rupp O, Pucker B, Hublik G, Wibberg D, Niehaus K, Pühler A, Vorhölter FJ.

J Biotechnol. 2017 Jul 10;253:55-61. doi: 10.1016/j.jbiotec.2017.05.009. Epub 2017 May 12.


A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny.

Pucker B, Holtgräwe D, Rosleff Sörensen T, Stracke R, Viehöver P, Weisshaar B.

PLoS One. 2016 Oct 6;11(10):e0164321. doi: 10.1371/journal.pone.0164321. eCollection 2016.


Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris).

Stracke R, Holtgräwe D, Schneider J, Pucker B, Sörensen TR, Weisshaar B.

BMC Plant Biol. 2014 Sep 25;14:249. doi: 10.1186/s12870-014-0249-8.

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