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Items: 19

1.

Zebrafish knock-ins swim into the mainstream.

Prykhozhij SV, Berman JN.

Dis Model Mech. 2018 Oct 24;11(10). pii: dmm037515. doi: 10.1242/dmm.037515.

2.

Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9.

Prykhozhij SV, Fuller C, Steele SL, Veinotte CJ, Razaghi B, Robitaille JM, McMaster CR, Shlien A, Malkin D, Berman JN.

Nucleic Acids Res. 2018 Sep 28;46(17):9252. doi: 10.1093/nar/gky674. No abstract available.

3.

Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9.

Prykhozhij SV, Fuller C, Steele SL, Veinotte CJ, Razaghi B, Robitaille JM, McMaster CR, Shlien A, Malkin D, Berman JN.

Nucleic Acids Res. 2018 Sep 28;46(17):e102. doi: 10.1093/nar/gky512.

4.

Etiology and functional validation of gastrointestinal motility dysfunction in a zebrafish model of CHARGE syndrome.

Cloney K, Steele SL, Stoyek MR, Croll RP, Smith FM, Prykhozhij SV, Brown MM, Midgen C, Blake K, Berman JN.

FEBS J. 2018 Jun;285(11):2125-2140. doi: 10.1111/febs.14473. Epub 2018 Apr 27.

PMID:
29660852
5.

New Developments in CRISPR/Cas-based Functional Genomics and their Implications for Research Using Zebrafish.

Prykhozhij SV, Caceres L, Berman JN.

Curr Gene Ther. 2017;17(4):286-300. doi: 10.2174/1566523217666171121164132.

PMID:
29173171
6.

hace1 Influences zebrafish cardiac development via ROS-dependent mechanisms.

Razaghi B, Steele SL, Prykhozhij SV, Stoyek MR, Hill JA, Cooper MD, McDonald L, Lin W, Daugaard M, Crapoulet N, Chacko S, Lewis SM, Scott IC, Sorensen PHB, Berman JN.

Dev Dyn. 2018 Feb;247(2):289-303. doi: 10.1002/dvdy.24600. Epub 2017 Oct 27.

PMID:
29024245
7.

A rapid and effective method for screening, sequencing and reporter verification of engineered frameshift mutations in zebrafish.

Prykhozhij SV, Steele SL, Razaghi B, Berman JN.

Dis Model Mech. 2017 Jun 1;10(6):811-822. doi: 10.1242/dmm.026765. Epub 2017 Mar 9.

8.

Insert, remove or replace: A highly advanced genome editing system using CRISPR/Cas9.

Ceasar SA, Rajan V, Prykhozhij SV, Berman JN, Ignacimuthu S.

Biochim Biophys Acta. 2016 Sep;1863(9):2333-44. doi: 10.1016/j.bbamcr.2016.06.009. Epub 2016 Jun 24. Review.

9.

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements.

Telorac J, Prykhozhij SV, Schöne S, Meierhofer D, Sauer S, Thomas-Chollier M, Meijsing SH.

Nucleic Acids Res. 2016 Jul 27;44(13):6142-56. doi: 10.1093/nar/gkw203. Epub 2016 Mar 25.

10.

Glycine and Folate Ameliorate Models of Congenital Sideroblastic Anemia.

Fernández-Murray JP, Prykhozhij SV, Dufay JN, Steele SL, Gaston D, Nasrallah GK, Coombs AJ, Liwski RS, Fernandez CV, Berman JN, McMaster CR.

PLoS Genet. 2016 Jan 28;12(1):e1005783. doi: 10.1371/journal.pgen.1005783. eCollection 2016 Jan.

11.

A Guide to Computational Tools and Design Strategies for Genome Editing Experiments in Zebrafish Using CRISPR/Cas9.

Prykhozhij SV, Rajan V, Berman JN.

Zebrafish. 2016 Feb;13(1):70-3. doi: 10.1089/zeb.2015.1158. Epub 2015 Dec 18.

PMID:
26683213
12.

Correction: CRISPR MultiTargeter: A Web Tool to Find Common and Unique CRISPR Single Guide RNA Targets in a Set of Similar Sequences.

Prykhozhij SV, Rajan V, Gaston D, Berman JN.

PLoS One. 2015 Sep 14;10(9):e0138634. doi: 10.1371/journal.pone.0138634. eCollection 2015. No abstract available.

13.

CRISPR multitargeter: a web tool to find common and unique CRISPR single guide RNA targets in a set of similar sequences.

Prykhozhij SV, Rajan V, Gaston D, Berman JN.

PLoS One. 2015 Mar 5;10(3):e0119372. doi: 10.1371/journal.pone.0119372. eCollection 2015. Erratum in: PLoS One. 2015;10(9):e0138634.

14.

A transgenic zebrafish model expressing KIT-D816V recapitulates features of aggressive systemic mastocytosis.

Balci TB, Prykhozhij SV, Teh EM, Da'as SI, McBride E, Liwski R, Chute IC, Leger D, Lewis SM, Berman JN.

Br J Haematol. 2014 Oct;167(1):48-61. doi: 10.1111/bjh.12999. Epub 2014 Jul 2.

PMID:
24989799
15.

The progress and promise of zebrafish as a model to study mast cells.

Prykhozhij SV, Berman JN.

Dev Comp Immunol. 2014 Sep;46(1):74-83. doi: 10.1016/j.dci.2014.01.023. Epub 2014 Feb 6. Review.

PMID:
24508982
16.

Zebrafish as a model system for mitochondrial biology and diseases.

Steele SL, Prykhozhij SV, Berman JN.

Transl Res. 2014 Feb;163(2):79-98. doi: 10.1016/j.trsl.2013.08.008. Epub 2013 Sep 20. Review.

PMID:
24055494
17.

Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets.

Prykhozhij SV, Marsico A, Meijsing SH.

Zebrafish. 2013 Sep;10(3):303-15. doi: 10.1089/zeb.2012.0865. Epub 2013 May 8.

18.
19.

Distinct roles of Shh and Fgf signaling in regulating cell proliferation during zebrafish pectoral fin development.

Prykhozhij SV, Neumann CJ.

BMC Dev Biol. 2008 Sep 23;8:91. doi: 10.1186/1471-213X-8-91.

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