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Items: 12

1.

Developmental Transcriptomic Analysis of the Cave-Dwelling Crustacean, Asellus aquaticus.

Gross JB, Sun DA, Carlson BM, Brodo-Abo S, Protas ME.

Genes (Basel). 2019 Dec 29;11(1). pii: E42. doi: 10.3390/genes11010042.

2.

Embryonic origin and genetic basis of cave associated phenotypes in the isopod crustacean Asellus aquaticus.

Mojaddidi H, Fernandez FE, Erickson PA, Protas ME.

Sci Rep. 2018 Nov 8;8(1):16589. doi: 10.1038/s41598-018-34405-8.

3.

Common Genetic Basis of Eye and Pigment Loss in Two Distinct Cave Populations of the Isopod Crustacean Asellus aquaticus.

Re C, Fišer Ž, Perez J, Tacdol A, Trontelj P, Protas ME.

Integr Comp Biol. 2018 Sep 1;58(3):421-430. doi: 10.1093/icb/icy028.

PMID:
29790967
4.

Mutations of conserved non-coding elements of PITX2 in patients with ocular dysgenesis and developmental glaucoma.

Protas ME, Weh E, Footz T, Kasberger J, Baraban SC, Levin AV, Katz LJ, Ritch R, Walter MA, Semina EV, Gould DB.

Hum Mol Genet. 2017 Sep 15;26(18):3630-3638. doi: 10.1093/hmg/ddx251.

5.

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML.

Genome Biol Evol. 2016 Jun 3;8(5):1571-89. doi: 10.1093/gbe/evw100.

6.

A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus.

Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME.

PLoS One. 2015 Oct 13;10(10):e0140484. doi: 10.1371/journal.pone.0140484. eCollection 2015.

7.

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH.

BMC Bioinformatics. 2014 Nov 19;15:350. doi: 10.1186/s12859-014-0350-x.

8.

Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus.

Protas ME, Trontelj P, Patel NH.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5702-7. doi: 10.1073/pnas.1013850108. Epub 2011 Mar 21.

9.

Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.

Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13892-6. doi: 10.1073/pnas.0903105106. Epub 2009 Aug 4.

10.

Evolution of coloration patterns.

Protas ME, Patel NH.

Annu Rev Cell Dev Biol. 2008;24:425-46. doi: 10.1146/annurev.cellbio.24.110707.175302. Review.

PMID:
18593352
11.

Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism.

Protas ME, Hersey C, Kochanek D, Zhou Y, Wilkens H, Jeffery WR, Zon LI, Borowsky R, Tabin CJ.

Nat Genet. 2006 Jan;38(1):107-11. Epub 2005 Dec 11.

PMID:
16341223
12.

Reduce your pelvis in 10000 years or less.

Protas ME, Tabin CJ.

Dev Cell. 2004 May;6(5):613-4. Review.

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