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Cost-effective assembly of the African wild dog (Lycaon pictus) genome using linked reads.

Armstrong EE, Taylor RW, Prost S, Blinston P, van der Meer E, Madzikanda H, Mufute O, Mandisodza-Chikerema R, Stuelpnagel J, Sillero-Zubiri C, Petrov D.

Gigascience. 2018 Oct 22. doi: 10.1093/gigascience/giy124. [Epub ahead of print]


Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry.

Chouinard CD, Nagy G, Webb IK, Shi T, Baker ES, Prost SA, Liu T, Ibrahim YM, Smith RD.

Anal Chem. 2018 Sep 18;90(18):10889-10896. doi: 10.1021/acs.analchem.8b02397. Epub 2018 Aug 29.


U.S. Department of Corrections Compassionate Release Policies: A Content Analysis and Call to Action.

Holland MM, Prost SG, Hoffmann HC, Dickinson GE.

Omega (Westport). 2018 Aug 6:30222818791708. doi: 10.1177/0030222818791708. [Epub ahead of print]


Retrospective multicenter study by the French Spine Society of surgical treatment for spinal metastasis in France.

Sailhan F, Prost S, Zairi F, Gille O, Pascal-Mousselard H, Bennis S, Charles YP, Blondel B, Fuentes S; French Spine Society (SFCR).

Orthop Traumatol Surg Res. 2018 Sep;104(5):589-595. doi: 10.1016/j.otsr.2018.06.006. Epub 2018 Jul 30.


Co-occurrence of ecologically similar species of Hawaiian spiders reveals critical early phase of adaptive radiation.

Cotoras DD, Bi K, Brewer MS, Lindberg DR, Prost S, Gillespie RG.

BMC Evol Biol. 2018 Jun 19;18(1):100. doi: 10.1186/s12862-018-1209-y.


Odontoid Fracture in Patients Age >75 Years Surgically Managed by the Harms Technique: Bone Healing and 1-Year Mortality Rate in 57 Cases.

Faure A, Prost S, Mansouri N, Farah K, Blondel B, Fuentes S.

World Neurosurg. 2018 Aug;116:e1087-e1091. doi: 10.1016/j.wneu.2018.05.172. Epub 2018 Jun 1.


Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata.

Armstrong EE, Prost S, Ertz D, Westberg M, Frisch A, Bendiksby M.

Genome Announc. 2018 Apr 5;6(14). pii: e00281-18. doi: 10.1128/genomeA.00281-18.


Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building.

Pomerantz A, Peñafiel N, Arteaga A, Bustamante L, Pichardo F, Coloma LA, Barrio-Amorós CL, Salazar-Valenzuela D, Prost S.

Gigascience. 2018 Apr 1;7(4). doi: 10.1093/gigascience/giy033.


Rapid divergence of mussel populations despite incomplete barriers to dispersal.

Maas DL, Prost S, Bi K, Smith LL, Armstrong EE, Aji LP, Toha AHA, Gillespie RG, Becking LE.

Mol Ecol. 2018 Apr;27(7):1556-1571. doi: 10.1111/mec.14556.


Ancient mitogenomes of Phoenicians from Sardinia and Lebanon: A story of settlement, integration, and female mobility.

Matisoo-Smith E, Gosling AL, Platt D, Kardailsky O, Prost S, Cameron-Christie S, Collins CJ, Boocock J, Kurumilian Y, Guirguis M, Pla Orquín R, Khalil W, Genz H, Abou Diwan G, Nassar J, Zalloua P.

PLoS One. 2018 Jan 10;13(1):e0190169. doi: 10.1371/journal.pone.0190169. eCollection 2018.


Detection of viral hepatitis E in clinical liver biopsies.

Prost S, Crossan CL, Dalton HR, De Man RA, Kamar N, Selves J, Dhaliwal C, Scobie L, Bellamy COC.

Histopathology. 2017 Oct;71(4):580-590. doi: 10.1111/his.13266. Epub 2017 Aug 7.


Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM).

Deng L, Garimella SVB, Hamid AM, Webb IK, Attah IK, Norheim RV, Prost SA, Zheng X, Sandoval JA, Baker ES, Ibrahim YM, Smith RD.

Anal Chem. 2017 Jun 20;89(12):6432-6439. doi: 10.1021/acs.analchem.7b00189. Epub 2017 May 25.


Toward artifact-free data in Hadamard transform-based double multiplexing of ion mobility-Orbitrap mass spectrometry.

Tummalacherla M, Garimella SVB, Prost SA, Ibrahim YM.

Analyst. 2017 May 21;142(10):1735-1745. doi: 10.1039/c7an00289k. Epub 2017 Apr 13.


Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations.

Deng L, Webb IK, Garimella SVB, Hamid AM, Zheng X, Norheim RV, Prost SA, Anderson GA, Sandoval JA, Baker ES, Ibrahim YM, Smith RD.

Anal Chem. 2017 Apr 18;89(8):4628-4634. doi: 10.1021/acs.analchem.7b00185. Epub 2017 Apr 5.


Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform.

Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD.

Anal Chem. 2016 Dec 20;88(24):12152-12160. doi: 10.1021/acs.analchem.6b03027. Epub 2016 Dec 1.


Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations.

Wojcik R, Webb IK, Deng L, Garimella SV, Prost SA, Ibrahim YM, Baker ES, Smith RD.

Int J Mol Sci. 2017 Jan 18;18(1). pii: E183. doi: 10.3390/ijms18010183.


Pioglitazone together with imatinib in chronic myeloid leukemia: A proof of concept study.

Rousselot P, Prost S, Guilhot J, Roy L, Etienne G, Legros L, Charbonnier A, Coiteux V, Cony-Makhoul P, Huguet F, Cayssials E, Cayuela JM, Relouzat F, Delord M, Bruzzoni-Giovanelli H, Morisset L, Mahon FX, Guilhot F, Leboulch P; French CML Group.

Cancer. 2017 May 15;123(10):1791-1799. doi: 10.1002/cncr.30490. Epub 2016 Dec 27.


Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming.

Garimella SV, Hamid AM, Deng L, Ibrahim YM, Webb IK, Baker ES, Prost SA, Norheim RV, Anderson GA, Smith RD.

Anal Chem. 2016 Dec 6;88(23):11877-11885. Epub 2016 Nov 17.


First complete mitochondrial genome data from ancient South American camelids - The mystery of the chilihueques from Isla Mocha (Chile).

Westbury M, Prost S, Seelenfreund A, Ramírez JM, Matisoo-Smith EA, Knapp M.

Sci Rep. 2016 Dec 8;6:38708. doi: 10.1038/srep38708.


The Proprotein Convertases in Hypercholesterolemia and Cardiovascular Diseases: Emphasis on Proprotein Convertase Subtilisin/Kexin 9.

Seidah NG, Abifadel M, Prost S, Boileau C, Prat A.

Pharmacol Rev. 2017 Jan;69(1):33-52. Review.


Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations.

Deng L, Ibrahim YM, Garimella SV, Webb IK, Hamid AM, Norheim RV, Prost SA, Sandoval JA, Baker ES, Smith RD.

Anal Chem. 2016 Oct 7. [Epub ahead of print]


Working with Commercially Available Quantum Dots for Immunofluorescence on Tissue Sections.

Prost S, Kishen RE, Kluth DC, Bellamy CO.

PLoS One. 2016 Sep 29;11(9):e0163856. doi: 10.1371/journal.pone.0163856. eCollection 2016.


Choice of Illumination System & Fluorophore for Multiplex Immunofluorescence on FFPE Tissue Sections.

Prost S, Kishen RE, Kluth DC, Bellamy CO.

PLoS One. 2016 Sep 15;11(9):e0162419. doi: 10.1371/journal.pone.0162419. eCollection 2016.


Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module.

Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Sep 20;88(18):8957-64. doi: 10.1021/acs.analchem.6b01915. Epub 2016 Aug 26.


Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations.

Hamid AM, Garimella SVB, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Sep 20;88(18):8949-8956. doi: 10.1021/acs.analchem.6b01914. Epub 2016 Aug 12.


What are the challenges in 2016 regarding resistance to tyrosine kinase inhibitors in chronic myeloid leukemia and cancer?

Lewis M, Copland M, Soverini S, Sadovnik I, Bedel A, Prost S, Italiano A, Mahon FX.

Hematol Oncol. 2017 Dec;35(4):420-423. doi: 10.1002/hon.2329. Epub 2016 Jul 19.


Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry.

Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD.

ChemistrySelect. 2016 Jul 1;1(10):2396-2399. doi: 10.1002/slct.201600460.


Inhibition of the acetyl lysine-binding pocket of bromodomain and extraterminal domain proteins interferes with adipogenesis.

Goupille O, Penglong T, Kadri Z, Granger-Locatelli M, Fucharoen S, Maouche-Chrétien L, Prost S, Leboulch P, Chrétien S.

Biochem Biophys Res Commun. 2016 Apr 15;472(4):624-30. doi: 10.1016/j.bbrc.2016.03.013. Epub 2016 Mar 10.


Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings.

Palkopoulou E, Baca M, Abramson NI, Sablin M, Socha P, Nadachowski A, Prost S, Germonpré M, Kosintsev P, Smirnov NG, Vartanyan S, Ponomarev D, Nyström J, Nikolskiy P, Jass CN, Litvinov YN, Kalthoff DC, Grigoriev S, Fadeeva T, Douka A, Higham TF, Ersmark E, Pitulko V, Pavlova E, Stewart JR, Węgleński P, Stankovic A, Dalén L.

Glob Chang Biol. 2016 May;22(5):1710-21. doi: 10.1111/gcb.13214. Epub 2016 Feb 25.


Functional Immune Anatomy of the Liver-As an Allograft.

Demetris AJ, Bellamy CO, Gandhi CR, Prost S, Nakanuma Y, Stolz DB.

Am J Transplant. 2016 Jun;16(6):1653-80. doi: 10.1111/ajt.13749. Epub 2016 Mar 21. Review.


Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations.

Chen TC, Ibrahim YM, Webb IK, Garimella SV, Zhang X, Hamid AM, Deng L, Karnesky WE, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD.

Anal Chem. 2016 Feb 2;88(3):1728-33. doi: 10.1021/acs.analchem.5b03910. Epub 2016 Jan 21.


What Do Athletes Know on the Effect of Steroids? An Exploratory Study in Italy.

Vellante M, Moro MF, Sancassiani F, Prost S, Machado S, Nardi AE, Preti A, Mura G.

CNS Neurol Disord Drug Targets. 2015;14(10):1272-6.


Characterization of Traveling Wave Ion Mobility Separations in Structures for Lossless Ion Manipulations.

Hamid AM, Ibrahim YM, Garimella SV, Webb IK, Deng L, Chen TC, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Smith RD.

Anal Chem. 2015 Nov 17;87(22):11301-8. doi: 10.1021/acs.analchem.5b02481. Epub 2015 Oct 28.


Complete Mitochondrial Genomes of New Zealand's First Dogs.

Greig K, Boocock J, Prost S, Horsburgh KA, Jacomb C, Walter R, Matisoo-Smith E.

PLoS One. 2015 Oct 7;10(10):e0138536. doi: 10.1371/journal.pone.0138536. eCollection 2015.


An adaptable multiple power source for mass spectrometry and other scientific instruments.

Lin TY, Anderson GA, Norheim RV, Prost SA, LaMarche BL, Leach FE 3rd, Auberry KJ, Smith RD, Koppenaal DW, Robinson EW, Paša-Tolić L.

Rev Sci Instrum. 2015 Sep;86(9):094102. doi: 10.1063/1.4930967.


Erosion of the chronic myeloid leukaemia stem cell pool by PPARγ agonists.

Prost S, Relouzat F, Spentchian M, Ouzegdouh Y, Saliba J, Massonnet G, Beressi JP, Verhoeyen E, Raggueneau V, Maneglier B, Castaigne S, Chomienne C, Chrétien S, Rousselot P, Leboulch P.

Nature. 2015 Sep 17;525(7569):380-3. doi: 10.1038/nature15248. Epub 2015 Sep 2.


Electrokinetic sample preconcentration and hydrodynamic sample injection for microchip electrophoresis using a pneumatic microvalve.

Cong Y, Katipamula S, Geng T, Prost SA, Tang K, Kelly RT.

Electrophoresis. 2016 Feb;37(3):455-62. doi: 10.1002/elps.201500286. Epub 2015 Nov 6.


Geographically contrasting biodiversity reductions in a widespread New Zealand seabird.

Rawlence NJ, Kennedy M, Anderson CN, Prost S, Till CE, Smith IW, Scofield RP, Tennyson AJ, Hamel J, Lalas C, Matisoo-Smith EA, Waters JM.

Mol Ecol. 2015 Sep;24(18):4605-16. doi: 10.1111/mec.13338. Epub 2015 Aug 31.


Orthogonal Injection Ion Funnel Interface Providing Enhanced Performance for Selected Reaction Monitoring-Triple Quadrupole Mass Spectrometry.

Chen TC, Fillmore TL, Prost SA, Moore RJ, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jul 21;87(14):7326-31. doi: 10.1021/acs.analchem.5b01482. Epub 2015 Jul 8.


Transplantation of Macaca cynomolgus iPS-derived hematopoietic cells in NSG immunodeficient mice.

Abed S, Tubsuwan A, Chaichompoo P, Park IH, Pailleret A, Benyoucef A, Tosca L, De Dreuzy E, Paulard A, Granger-Locatelli M, Relouzat F, Prost S, Tachdjian G, Fucharoen S, Daley GQ, Payen E, Chrétien S, Leboulch P, Maouche-Chrétien L.

Haematologica. 2015 Oct;100(10):e428-31. doi: 10.3324/haematol.2015.127373. Epub 2015 Jun 18. No abstract available.


Mental Health Professionals and Behavioral Interventions for Obesity: A Systematic Literature Review.

Prost SG, Ai AL, Ainsworth SE, Ayers J.

J Evid Inf Soc Work. 2016 May-Jun;13(3):305-30. doi: 10.1080/23761407.2015.1031418. Epub 2015 Jun 18. Review.


Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations.

Zhang X, Garimella SV, Prost SA, Webb IK, Chen TC, Tang K, Tolmachev AV, Norheim RV, Baker ES, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jun 16;87(12):6010-6. doi: 10.1021/acs.analchem.5b00214. Epub 2015 May 26.


Rectangular ion funnel: a new ion funnel interface for structures for lossless ion manipulations.

Chen TC, Webb IK, Prost SA, Harrer MB, Norheim RV, Tang K, Ibrahim YM, Smith RD.

Anal Chem. 2015 Jan 6;87(1):716-22. doi: 10.1021/ac503564c. Epub 2014 Dec 8.


Simulation of electric potentials and ion motion in planar electrode structures for lossless ion manipulations (SLIM).

Garimella SV, Ibrahim YM, Webb IK, Tolmachev AV, Zhang X, Prost SA, Anderson GA, Smith RD.

J Am Soc Mass Spectrom. 2014 Nov;25(11):1890-6. doi: 10.1007/s13361-014-0976-y. Epub 2014 Sep 26.


Mobility-resolved ion selection in uniform drift field ion mobility spectrometry/mass spectrometry: dynamic switching in structures for lossless ion manipulations.

Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Cox JT, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2014 Oct 7;86(19):9632-7. doi: 10.1021/ac502139e. Epub 2014 Sep 26.


Experimental evaluation and optimization of structures for lossless ion manipulations for ion mobility spectrometry with time-of-flight mass spectrometry.

Webb IK, Garimella SV, Tolmachev AV, Chen TC, Zhang X, Norheim RV, Prost SA, LaMarche B, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2014 Sep 16;86(18):9169-76. doi: 10.1021/ac502055e. Epub 2014 Sep 5.


Reply to J. Richter et al.

Rousselot P, Charbonnier A, Cony-Makhoul P, Agape P, Nicolini FE, Varet B, Gardembas M, Etienne G, Réa D, Roy L, Escoffre-Barbe M, Guerci-Bresler A, Tulliez M, Prost S, Spentchian M, Cayuela JM, Reiffers J, Chomel JC, Turhan A, Guilhot J, Guilhot F, Mahon FX.

J Clin Oncol. 2014 Sep 1;32(25):2823-5. doi: 10.1200/JCO.2014.56.3858. Epub 2014 Jul 28. No abstract available.


Extinction and recolonization of coastal megafauna following human arrival in New Zealand.

Collins CJ, Rawlence NJ, Prost S, Anderson CN, Knapp M, Scofield RP, Robertson BC, Smith I, Matisoo-Smith EA, Chilvers BL, Waters JM.

Proc Biol Sci. 2014 Jul 7;281(1786). pii: 20140097. doi: 10.1098/rspb.2014.0097.


Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements.

Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH.

J Am Soc Mass Spectrom. 2014 Dec;25(12):2020-2027. doi: 10.1007/s13361-014-0895-y. Epub 2014 May 6.


Ancient mitochondrial DNA and the genetic history of Eurasian beaver (Castor fiber) in Europe.

Horn S, Prost S, Stiller M, Makowiecki D, Kuznetsova T, Benecke N, Pucher E, Hufthammer AK, Schouwenburg C, Shapiro B, Hofreiter M.

Mol Ecol. 2014 Apr;23(7):1717-29.


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