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Nitrous oxide production by ammonia oxidizers: Physiological diversity, niche differentiation and potential mitigation strategies.

Prosser JI, Hink L, Gubry-Rangin C, Nicol GW.

Glob Chang Biol. 2020 Jan;26(1):103-118. doi: 10.1111/gcb.14877. Epub 2019 Nov 29. Review.


Genome Sequence of "Candidatus Nitrosocosmicus franklandus" C13, a Terrestrial Ammonia-Oxidizing Archaeon.

Nicol GW, Hink L, Gubry-Rangin C, Prosser JI, Lehtovirta-Morley LE.

Microbiol Resour Announc. 2019 Oct 3;8(40). pii: e00435-19. doi: 10.1128/MRA.00435-19.


Soil bacterial networks are less stable under drought than fungal networks.

de Vries FT, Griffiths RI, Bailey M, Craig H, Girlanda M, Gweon HS, Hallin S, Kaisermann A, Keith AM, Kretzschmar M, Lemanceau P, Lumini E, Mason KE, Oliver A, Ostle N, Prosser JI, Thion C, Thomson B, Bardgett RD.

Nat Commun. 2018 Aug 2;9(1):3033. doi: 10.1038/s41467-018-05516-7.


The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions.

Hink L, Gubry-Rangin C, Nicol GW, Prosser JI.

ISME J. 2018 Apr;12(4):1084-1093. doi: 10.1038/s41396-017-0025-5. Epub 2018 Jan 31.


Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.


Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity.

Nacke H, Schöning I, Schindler M, Schrumpf M, Daniel R, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix144.


Abiotic Conversion of Extracellular NH2OH Contributes to N2O Emission during Ammonia Oxidation.

Liu S, Han P, Hink L, Prosser JI, Wagner M, Brüggemann N.

Environ Sci Technol. 2017 Nov 21;51(22):13122-13132. doi: 10.1021/acs.est.7b02360. Epub 2017 Oct 31.


Ammonia oxidisers in a non-nitrifying Brazilian savanna soil.

Catão ECP, Thion C, Krüger RH, Prosser JI.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix122.


Spotlight on… Jim Prosser.

Prosser JI.

FEMS Microbiol Lett. 2017 Oct 2;364(18). doi: 10.1093/femsle/fnx183. No abstract available.


Kinetics of NH3 -oxidation, NO-turnover, N2 O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers.

Hink L, Lycus P, Gubry-Rangin C, Frostegård Å, Nicol GW, Prosser JI, Bakken LR.

Environ Microbiol. 2017 Dec;19(12):4882-4896. doi: 10.1111/1462-2920.13914. Epub 2017 Sep 21.


Editorial: FEMS Letters: investing in science for 40 years.

Cotton CM, Prosser JI.

FEMS Microbiol Lett. 2017 May 1;364(10). doi: 10.1093/femsle/fnx095. No abstract available.


Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.


Stream drying drives microbial ammonia oxidation and first-flush nitrate export.

Merbt SN, Proia L, Prosser JI, Martí E, Casamayor EO, von Schiller D.

Ecology. 2016 Sep;97(9):2192-2198. doi: 10.1002/ecy.1486.


The Role of Microbial Community Composition in Controlling Soil Respiration Responses to Temperature.

Auffret MD, Karhu K, Khachane A, Dungait JA, Fraser F, Hopkins DW, Wookey PA, Singh BK, Freitag TE, Hartley IP, Prosser JI.

PLoS One. 2016 Oct 31;11(10):e0165448. doi: 10.1371/journal.pone.0165448. eCollection 2016.


A timely reminder of technical limitations.

Prosser JI.

Microb Biotechnol. 2016 Jul;9(4):435. doi: 10.1111/1751-7915.12376. No abstract available.


Plant nitrogen-use strategy as a driver of rhizosphere archaeal and bacterial ammonia oxidiser abundance.

Thion CE, Poirel JD, Cornulier T, De Vries FT, Bardgett RD, Prosser JI.

FEMS Microbiol Ecol. 2016 Jul;92(7). pii: fiw091. doi: 10.1093/femsec/fiw091. Epub 2016 Apr 28.


Isolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration.

Lehtovirta-Morley LE, Ross J, Hink L, Weber EB, Gubry-Rangin C, Thion C, Prosser JI, Nicol GW.

FEMS Microbiol Ecol. 2016 May;92(5):fiw057. doi: 10.1093/femsec/fiw057. Epub 2016 Mar 13.


Archaea produce lower yields of N2 O than bacteria during aerobic ammonia oxidation in soil.

Hink L, Nicol GW, Prosser JI.

Environ Microbiol. 2017 Dec;19(12):4829-4837. doi: 10.1111/1462-2920.13282. Epub 2016 Apr 28.


Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon "Candidatus Nitrosotalea devanaterra".

Lehtovirta-Morley LE, Sayavedra-Soto LA, Gallois N, Schouten S, Stein LY, Prosser JI, Nicol GW.

Appl Environ Microbiol. 2016 Apr 18;82(9):2608-2619. doi: 10.1128/AEM.04031-15. Print 2016 May.


Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota.

Gubry-Rangin C, Kratsch C, Williams TA, McHardy AC, Embley TM, Prosser JI, Macqueen DJ.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9370-5. doi: 10.1073/pnas.1419329112. Epub 2015 Jul 13.


Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota.

Oton EV, Quince C, Nicol GW, Prosser JI, Gubry-Rangin C.

ISME J. 2016 Jan;10(1):85-96. doi: 10.1038/ismej.2015.101. Epub 2015 Jul 3.


Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology.

Prosser JI.

Nat Rev Microbiol. 2015 Jul;13(7):439-46. doi: 10.1038/nrmicro3468. Epub 2015 Jun 8.


Ammonia oxidation is not required for growth of Group 1.1c soil Thaumarchaeota.

Weber EB, Lehtovirta-Morley LE, Prosser JI, Gubry-Rangin C.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiv001. doi: 10.1093/femsec/fiv001. Epub 2015 Jan 13.


pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils.

Stempfhuber B, Engel M, Fischer D, Neskovic-Prit G, Wubet T, Schöning I, Gubry-Rangin C, Kublik S, Schloter-Hai B, Rattei T, Welzl G, Nicol GW, Schrumpf M, Buscot F, Prosser JI, Schloter M.

Microb Ecol. 2015 May;69(4):879-83. doi: 10.1007/s00248-014-0548-5. Epub 2014 Dec 12.


Temperature sensitivity of soil respiration rates enhanced by microbial community response.

Karhu K, Auffret MD, Dungait JA, Hopkins DW, Prosser JI, Singh BK, Subke JA, Wookey PA, Agren GI, Sebastià MT, Gouriveau F, Bergkvist G, Meir P, Nottingham AT, Salinas N, Hartley IP.

Nature. 2014 Sep 4;513(7516):81-4. doi: 10.1038/nature13604.


Differential response of nonadapted ammonia-oxidising archaea and bacteria to drying-rewetting stress.

Thion C, Prosser JI.

FEMS Microbiol Ecol. 2014 Nov;90(2):380-9. doi: 10.1111/1574-6941.12395. Epub 2014 Sep 15.


Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds.

Lehtovirta-Morley LE, Ge C, Ross J, Yao H, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2014 Sep;89(3):542-52. doi: 10.1111/1574-6941.12353. Epub 2014 Jul 31.


Most influential FEMS publications.

Prosser JI, Cole JA, Nielsen J, Bavoil PM, Häggblom MM.

FEMS Microbiol Lett. 2014 May;354(2):83-4. doi: 10.1111/1574-6968.12444.


Microbiology: The life beneath our feet.

Jansson JK, Prosser JI.

Nature. 2013 Feb 7;494(7435):40-1. doi: 10.1038/494040a. No abstract available.


Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation.

Prosser JI, Nicol GW.

Trends Microbiol. 2012 Nov;20(11):523-31. doi: 10.1016/j.tim.2012.08.001. Epub 2012 Sep 7. Review.


Role of functionally dominant species in varying environmental regimes: evidence for the performance-enhancing effect of biodiversity.

Langenheder S, Bulling MT, Prosser JI, Solan M.

BMC Ecol. 2012 Jul 30;12:14. doi: 10.1186/1472-6785-12-14.


Ecosystem processes and interactions in a morass of diversity.

Prosser JI.

FEMS Microbiol Ecol. 2012 Sep;81(3):507-19. doi: 10.1111/j.1574-6941.2012.01435.x. Epub 2012 Jul 19.


Differential effects of microorganism-invertebrate interactions on benthic nitrogen cycling.

Gilbertson WW, Solan M, Prosser JI.

FEMS Microbiol Ecol. 2012 Oct;82(1):11-22. doi: 10.1111/j.1574-6941.2012.01400.x. Epub 2012 May 15.


Establishment of normal gut microbiota is compromised under excessive hygiene conditions.

Schmidt B, Mulder IE, Musk CC, Aminov RI, Lewis M, Stokes CR, Bailey M, Prosser JI, Gill BP, Pluske JR, Kelly D.

PLoS One. 2011;6(12):e28284. doi: 10.1371/journal.pone.0028284. Epub 2011 Dec 2.


Niche specialization of terrestrial archaeal ammonia oxidizers.

Gubry-Rangin C, Hai B, Quince C, Engel M, Thomson BC, James P, Schloter M, Griffiths RI, Prosser JI, Nicol GW.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21206-11. doi: 10.1073/pnas.1109000108. Epub 2011 Dec 8.


Stimulation of thaumarchaeal ammonia oxidation by ammonia derived from organic nitrogen but not added inorganic nitrogen.

Levičnik-Höfferle S, Nicol GW, Ausec L, Mandić-Mulec I, Prosser JI.

FEMS Microbiol Ecol. 2012 Apr;80(1):114-23. doi: 10.1111/j.1574-6941.2011.01275.x. Epub 2012 Jan 9.


Differential photoinhibition of bacterial and archaeal ammonia oxidation.

Merbt SN, Stahl DA, Casamayor EO, Martí E, Nicol GW, Prosser JI.

FEMS Microbiol Lett. 2012 Feb;327(1):41-6. doi: 10.1111/j.1574-6968.2011.02457.x. Epub 2011 Dec 2.


Ecology and metagenomics of soil microorganisms.

Baldrian P, Head IM, Prosser JI, Schloter M, Smalla K, Tebbe CC.

FEMS Microbiol Ecol. 2011 Oct;78(1):1-2. doi: 10.1111/j.1574-6941.2011.01184.x. Epub 2011 Aug 30. No abstract available.


Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil.

Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15892-7. doi: 10.1073/pnas.1107196108. Epub 2011 Sep 6.


Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils.

Yao H, Gao Y, Nicol GW, Campbell CD, Prosser JI, Zhang L, Han W, Singh BK.

Appl Environ Microbiol. 2011 Jul;77(13):4618-25. doi: 10.1128/AEM.00136-11. Epub 2011 May 13.


Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil.

Nicol GW, Prosser JI.

Methods Enzymol. 2011;496:3-34. doi: 10.1016/B978-0-12-386489-5.00001-4.


Community profiling and quantification of putative autotrophic thaumarchaeal communities in environmental samples.

Offre P, Nicol GW, Prosser JI.

Environ Microbiol Rep. 2011 Apr;3(2):245-53. doi: 10.1111/j.1758-2229.2010.00217.x. Epub 2010 Oct 26.


Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms.

Verhamme DT, Prosser JI, Nicol GW.

ISME J. 2011 Jun;5(6):1067-71. doi: 10.1038/ismej.2010.191. Epub 2011 Jan 13.


Archaea rather than bacteria control nitrification in two agricultural acidic soils.

Gubry-Rangin C, Nicol GW, Prosser JI.

FEMS Microbiol Ecol. 2010 Dec;74(3):566-74. doi: 10.1111/j.1574-6941.2010.00971.x. Epub 2010 Oct 12.


Ammonium supply rate influences archaeal and bacterial ammonia oxidizers in a wetland soil vertical profile.

Höfferle Š, Nicol GW, Pal L, Hacin J, Prosser JI, Mandić-Mulec I.

FEMS Microbiol Ecol. 2010 Nov;74(2):302-15. doi: 10.1111/j.1574-6941.2010.00961.x.


Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment.

Stopnisek N, Gubry-Rangin C, Höfferle S, Nicol GW, Mandic-Mulec I, Prosser JI.

Appl Environ Microbiol. 2010 Nov;76(22):7626-34. doi: 10.1128/AEM.00595-10. Epub 2010 Oct 1.


Autotrophic ammonia oxidation by soil thaumarchaea.

Zhang LM, Offre PR, He JZ, Verhamme DT, Nicol GW, Prosser JI.

Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17240-5. doi: 10.1073/pnas.1004947107. Epub 2010 Sep 20.


The impact of zero-valent iron nanoparticles on a river water bacterial community.

Barnes RJ, van der Gast CJ, Riba O, Lehtovirta LE, Prosser JI, Dobson PJ, Thompson IP.

J Hazard Mater. 2010 Dec 15;184(1-3):73-80. doi: 10.1016/j.jhazmat.2010.08.006. Epub 2010 Aug 8.


The ecological coherence of high bacterial taxonomic ranks.

Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB, Hallin S.

Nat Rev Microbiol. 2010 Jul;8(7):523-9. doi: 10.1038/nrmicro2367. Review.


Bacterial biodiversity-ecosystem functioning relations are modified by environmental complexity.

Langenheder S, Bulling MT, Solan M, Prosser JI.

PLoS One. 2010 May 26;5(5):e10834. doi: 10.1371/journal.pone.0010834.

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