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Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate Pseudomonas aeruginosa Epidemiology in Intensive Care Units.

Magalhães B, Valot B, Abdelbary MMH, Prod'hom G, Greub G, Senn L, Blanc DS.

Front Public Health. 2020 Jan 28;8:3. doi: 10.3389/fpubh.2020.00003. eCollection 2020.


Machine Learning Approach for Candida albicans Fluconazole Resistance Detection Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.

Delavy M, Cerutti L, Croxatto A, Prod'hom G, Sanglard D, Greub G, Coste AT.

Front Microbiol. 2020 Jan 14;10:3000. doi: 10.3389/fmicb.2019.03000. eCollection 2019.


Evaluation of the BD Phoenix™ CPO Detect Test for the detection of carbapenemase producers.

Croxatto A, Coste AT, Pillonel T, Bertelli C, Greub G, Prod'hom G.

Clin Microbiol Infect. 2019 Oct 18. pii: S1198-743X(19)30529-4. doi: 10.1016/j.cmi.2019.10.002. [Epub ahead of print]


Phenotypic, biochemical and genetic analysis of KPC-41, a KPC-3 variant conferring resistance to ceftazidime-avibactam and exhibiting reduced carbapenemase activity.

Mueller L, Masseron A, Prod'Hom G, Galperine T, Greub G, Poirel L, Nordmann P.

Antimicrob Agents Chemother. 2019 Sep 16. pii: AAC.01111-19. doi: 10.1128/AAC.01111-19. [Epub ahead of print]


Impact of co-amoxicillin-resistant Escherichia coli and Pseudomonas aeruginosa on the rate of infectious complications in paediatric complicated appendicitis.

Andrey V, Crisinel PA, Prod'hom G, Croxatto A, Joseph JM.

Swiss Med Wkly. 2019 Apr 26;149:w20055. doi: 10.4414/smw.2019.20055. eCollection 2019 Apr 22.


Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.

Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1696-1704. doi: 10.1099/ijsem.0.003378. Epub 2019 Apr 4.


Towards automated detection, semi-quantification and identification of microbial growth in clinical bacteriology: A proof of concept.

Croxatto A, Marcelpoil R, Orny C, Morel D, Prod'hom G, Greub G.

Biomed J. 2017 Dec;40(6):317-328. doi: 10.1016/ Epub 2017 Dec 26.


Evaluating the use of whole-genome sequencing for outbreak investigations in the lack of closely related reference genome.

Abdelbary MMH, Senn L, Moulin E, Prod'hom G, Croxatto A, Greub G, Blanc DS.

Infect Genet Evol. 2018 Apr;59:1-6. doi: 10.1016/j.meegid.2018.01.014. Epub 2018 Feb 2.


Skin Colonization by Staphylococcus aureus Precedes the Clinical Diagnosis of Atopic Dermatitis in Infancy.

Meylan P, Lang C, Mermoud S, Johannsen A, Norrenberg S, Hohl D, Vial Y, Prod'hom G, Greub G, Kypriotou M, Christen-Zaech S.

J Invest Dermatol. 2017 Dec;137(12):2497-2504. doi: 10.1016/j.jid.2017.07.834. Epub 2017 Aug 24.


Genomics of the new species Kingella negevensis: diagnostic issues and identification of a locus encoding a RTX toxin.

Opota O, Laurent S, Pillonel T, Léger M, Trachsel S, Prod'hom G, Jaton K, Greub G.

Microbes Infect. 2017 Nov;19(11):546-552. doi: 10.1016/j.micinf.2017.08.001. Epub 2017 Aug 10.


Draft Genome Sequences of Two Carbapenemase-Producing Acinetobacter baumannii Clinical Strains Isolated from Albanian and Togolese Patients.

Abdelbary MMH, Prod'hom G, Greub G, Senn L, Blanc DS.

Genome Announc. 2017 May 18;5(20). pii: e00115-17. doi: 10.1128/genomeA.00115-17.


Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections.

Tagini F, Aubert B, Troillet N, Pillonel T, Praz G, Crisinel PA, Prod'hom G, Asner S, Greub G.

Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1173-1180. doi: 10.1007/s10096-017-2905-z. Epub 2017 Jan 26.


Nanomechanical sensor applied to blood culture pellets: a fast approach to determine the antibiotic susceptibility against agents of bloodstream infections.

Stupar P, Opota O, Longo G, Prod'hom G, Dietler G, Greub G, Kasas S.

Clin Microbiol Infect. 2017 Jun;23(6):400-405. doi: 10.1016/j.cmi.2016.12.028. Epub 2017 Jan 3.


Bacillus cereus bacteraemia: comparison between haematologic and nonhaematologic patients.

Tusgul S, Prod'hom G, Senn L, Meuli R, Bochud PY, Giulieri SG.

New Microbes New Infect. 2016 Nov 17;15:65-71. doi: 10.1016/j.nmni.2016.11.011. eCollection 2017 Jan.


Draft Genome Sequence of a Cardiobacterium hominis Strain Isolated from Blood Cultures of a Patient with Infective Endocarditis.

Tagini F, Pillonel T, Asner S, Prod'hom G, Greub G.

Genome Announc. 2016 Sep 22;4(5). pii: e00999-16. doi: 10.1128/genomeA.00999-16.


Screening of plasmid-mediated MCR-1 colistin-resistance from bacteremia.

Nordmann P, Assouvie L, Prod'Hom G, Poirel L, Greub G.

Eur J Clin Microbiol Infect Dis. 2016 Nov;35(11):1891-1892. Epub 2016 Aug 10. No abstract available.


Visceral leishmaniasis in a lung transplant recipient: usefulness of highly sensitive real-time polymerase chain reaction for preemptive diagnosis.

Opota O, Balmpouzis Z, Berutto C, Kaiser-Guignard J, Greub G, Aubert JD, Prod'hom G, Manuel O, Jaton K.

Transpl Infect Dis. 2016 Oct;18(5):801-804. doi: 10.1111/tid.12585. Epub 2016 Sep 16.


Bacterial Translocation and Sample Contamination in Postmortem Microbiological Analyses.

Palmiere C, Egger C, Prod'Hom G, Greub G.

J Forensic Sci. 2016 Mar;61(2):367-374. doi: 10.1111/1556-4029.12991. Epub 2015 Dec 31.


Common skin infection due to Panton-Valentine leucocidin-producing Staphylococcus aureus strains in asylum seekers from Eritrea: a genome-based investigation of a suspected outbreak.

Jaton L, Pillonel T, Jaton K, Dory E, Prod'hom G, Blanc DS, Tissot F, Bodenmann P, Greub G.

Clin Microbiol Infect. 2016 Aug;22(8):739.e5-8. doi: 10.1016/j.cmi.2016.05.026. Epub 2016 Jun 6.


Added value of molecular assay Xpert MTB/RIF compared to sputum smear microscopy to assess the risk of tuberculosis transmission in a low-prevalence country.

Opota O, Senn L, Prod'hom G, Mazza-Stalder J, Tissot F, Greub G, Jaton K.

Clin Microbiol Infect. 2016 Jul;22(7):613-9. doi: 10.1016/j.cmi.2016.04.010. Epub 2016 Apr 29.


Hand soap contamination by Pseudomonas aeruginosa in a tertiary care hospital: no evidence of impact on patients.

Blanc DS, Gomes Magalhaes B, Abdelbary M, Prod'hom G, Greub G, Wasserfallen JB, Genoud P, Zanetti G, Senn L.

J Hosp Infect. 2016 May;93(1):63-7. doi: 10.1016/j.jhin.2016.02.010. Epub 2016 Mar 3.


Laboratory automation in clinical bacteriology: what system to choose?

Croxatto A, Prod'hom G, Faverjon F, Rochais Y, Greub G.

Clin Microbiol Infect. 2016 Mar;22(3):217-35. doi: 10.1016/j.cmi.2015.09.030. Epub 2016 Jan 20. Review.


The Stealthy Superbug: the Role of Asymptomatic Enteric Carriage in Maintaining a Long-Term Hospital Outbreak of ST228 Methicillin-Resistant Staphylococcus aureus.

Senn L, Clerc O, Zanetti G, Basset P, Prod'hom G, Gordon NC, Sheppard AE, Crook DW, James R, Thorpe HA, Feil EJ, Blanc DS.

mBio. 2016 Jan 19;7(1):e02039-15. doi: 10.1128/mBio.02039-15.


Development and evaluation of double locus sequence typing for molecular epidemiological investigations of Clostridium difficile.

Stojanov M, Magalhaes B, Terletsky V, Basset P, Prod'hom G, Greub G, Senn L, Blanc DS.

Eur J Clin Microbiol Infect Dis. 2016 Feb;35(2):175-81. doi: 10.1007/s10096-015-2525-4. Epub 2015 Nov 18.


Early detection of extended-spectrum β-lactamase from blood culture positive for an Enterobacteriaceae using βLACTA test.

Prod'hom G, Durussel C, Blanc D, Croxatto A, Greub G.

New Microbes New Infect. 2015 Jun 9;8:1-3. doi: 10.1016/j.nmni.2015.05.007. eCollection 2015 Nov.


Diagnosis of Aerococcus urinae infections: Importance of matrix-assisted laser desorption ionization time-of-flight mass spectrometry and broad-range 16S rDNA PCR.

Opota O, Prod'hom G, Andreutti-Zaugg C, Dessauges M, Merz L, Greub G, Chave JP, Jaton K.

Clin Microbiol Infect. 2016 Jan;22(1):e1-e2. doi: 10.1016/j.cmi.2015.08.026. Epub 2015 Sep 10. No abstract available.


Impact of round-the-clock CSF Gram stain on empirical therapy for suspected central nervous system infections.

Tissot F, Prod'hom G, Manuel O, Greub G.

Eur J Clin Microbiol Infect Dis. 2015 Sep;34(9):1849-57. doi: 10.1007/s10096-015-2423-9. Epub 2015 Jul 4.


Comparison of Inoculation with the InoqulA and WASP Automated Systems with Manual Inoculation.

Croxatto A, Dijkstra K, Prod'hom G, Greub G.

J Clin Microbiol. 2015 Jul;53(7):2298-307. doi: 10.1128/JCM.03076-14. Epub 2015 May 13.


Cryptococcus neoformans meningitis with negative cryptococcal antigen: Evaluation of a new immunochromatographic detection assay.

Opota O, Desgraz B, Kenfak A, Jaton K, Cavassini M, Greub G, Prod'hom G, Giulieri S.

New Microbes New Infect. 2014 Dec 19;4:1-4. doi: 10.1016/j.nmni.2014.12.003. eCollection 2015 Mar.


Blood culture-based diagnosis of bacteraemia: state of the art.

Opota O, Croxatto A, Prod'hom G, Greub G.

Clin Microbiol Infect. 2015 Apr;21(4):313-22. doi: 10.1016/j.cmi.2015.01.003. Epub 2015 Jan 16. Review.


Low C-reactive protein values at admission predict mortality in patients with severe community-acquired pneumonia caused by Streptococcus pneumoniae that require intensive care management.

Que YA, Virgini V, Lozeron ED, Paratte G, Prod'hom G, Revelly JP, Pagani JL, Charbonney E, Eggimann P.

Infection. 2015 Apr;43(2):193-9. doi: 10.1007/s15010-015-0755-0. Epub 2015 Mar 3.


Bifidobacterium longum bacteremia in preterm infants receiving probiotics.

Bertelli C, Pillonel T, Torregrossa A, Prod'hom G, Fischer CJ, Greub G, Giannoni E.

Clin Infect Dis. 2015 Mar 15;60(6):924-7. doi: 10.1093/cid/ciu946. Epub 2014 Dec 3.


Preparation of a blood culture pellet for rapid bacterial identification and antibiotic susceptibility testing.

Croxatto A, Prod'hom G, Durussel C, Greub G.

J Vis Exp. 2014 Oct 15;(92):e51985. doi: 10.3791/51985.


A simple, robust and rapid approach to detect carbapenemases in Gram-negative isolates by MALDI-TOF mass spectrometry: validation with triple quadripole tandem mass spectrometry, microarray and PCR.

Vogne C, Prod'hom G, Jaton K, Decosterd LA, Greub G.

Clin Microbiol Infect. 2014 Dec;20(12):O1106-12. doi: 10.1111/1469-0691.12715. Epub 2014 Dec 12.


Treatment of genital mycoplasma in colonized pregnant women in late pregnancy is associated with a lower rate of premature labour and neonatal complications.

Vouga M, Greub G, Prod'hom G, Durussel C, Roth-Kleiner M, Vasilevsky S, Baud D.

Clin Microbiol Infect. 2014 Oct;20(10):1074-9. doi: 10.1111/1469-0691.12686. Epub 2014 Jul 29.


Mandatory infectious diseases consultation for MRSA bacteremia is associated with reduced mortality.

Tissot F, Calandra T, Prod'hom G, Taffe P, Zanetti G, Greub G, Senn L.

J Infect. 2014 Sep;69(3):226-34. doi: 10.1016/j.jinf.2014.05.004. Epub 2014 May 15.


Cerebral nocardiosis mimicking multiple brain metastases in a patient with locally advanced non-small-cell lung cancer.

Voide C, Zimmermann S, Adjei AA, Betticher DC, Meuli R, Prod'hom G, Giulieri S, Peters S.

J Thorac Oncol. 2014 Mar;9(3):e24-6. doi: 10.1097/JTO.0000000000000018. No abstract available.


Bacteremia caused by Comamonas kerstersii in a patient with diverticulosis.

Opota O, Ney B, Zanetti G, Jaton K, Greub G, Prod'hom G.

J Clin Microbiol. 2014 Mar;52(3):1009-12. doi: 10.1128/JCM.02942-13. Epub 2013 Dec 26.


Matrix-assisted laser desorption ionization time-of-flight mass spectrometry and PCR-based rapid diagnosis of Staphylococcus aureus bacteraemia.

Clerc O, Prod'hom G, Senn L, Jaton K, Zanetti G, Calandra T, Greub G.

Clin Microbiol Infect. 2014 Apr;20(4):355-60. doi: 10.1111/1469-0691.12329. Epub 2013 Aug 28.


Molecular epidemiology of methicillin-resistant Staphylococcus aureus in Switzerland: sampling only invasive isolates does not allow a representative description of the local diversity of clones.

Senn L, Basset P, Greub G, Prod'hom G, Frei R, Zbinden R, Gaia V, Balmelli C, Pfyffer GE, Mühlemann K, Zanetti G, Blanc DS.

Clin Microbiol Infect. 2013 Jul;19(7):E288-90. doi: 10.1111/1469-0691.12185. Epub 2013 Mar 4.


Very low prevalence of meticillin-resistant Staphylococcus aureus carrying the mecC gene in western Switzerland.

Basset P, Prod'hom G, Senn L, Greub G, Blanc DS.

J Hosp Infect. 2013 Mar;83(3):257-9. doi: 10.1016/j.jhin.2012.12.004. Epub 2013 Feb 4.


A simple blood-culture bacterial pellet preparation for faster accurate direct bacterial identification and antibiotic susceptibility testing with the VITEK 2 system.

Prod'hom G, Durussel C, Greub G.

J Med Microbiol. 2013 May;62(Pt 5):773-7. doi: 10.1099/jmm.0.049361-0. Epub 2013 Jan 17.


Impact of matrix-assisted laser desorption ionization time-of-flight mass spectrometry on the clinical management of patients with Gram-negative bacteremia: a prospective observational study.

Clerc O, Prod'hom G, Vogne C, Bizzini A, Calandra T, Greub G.

Clin Infect Dis. 2013 Apr;56(8):1101-7. doi: 10.1093/cid/cis1204. Epub 2012 Dec 21.


Safety of falciparum malaria diagnostic strategy based on rapid diagnostic tests in returning travellers and migrants: a retrospective study.

Rossi IA, D'Acremont V, Prod'Hom G, Genton B.

Malar J. 2012 Nov 16;11:377. doi: 10.1186/1475-2875-11-377.


[Uncomplicated urinary tract infections: impact of increasing antibiotic resistance in the community].

Clerc O, Prod'hom G, Petignat C.

Rev Med Suisse. 2012 Apr 25;8(338):878-81. Review. French.


Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiology.

Croxatto A, Prod'hom G, Greub G.

FEMS Microbiol Rev. 2012 Mar;36(2):380-407. doi: 10.1111/j.1574-6976.2011.00298.x. Epub 2011 Aug 22. Review.


Pasteurella multocida zoonotic ascending infection: an unusual cause of tubo-ovarian abscess.

Baud D, Bizzini A, Jaton K, Achtari C, Prod'hom G, Greub G.

Vector Borne Zoonotic Dis. 2012 Jan;12(1):84-5. doi: 10.1089/vbz.2011.0610. Epub 2011 Sep 16.


Estrella lausannensis, a new star in the Chlamydiales order.

Lienard J, Croxatto A, Prod'hom G, Greub G.

Microbes Infect. 2011 Dec;13(14-15):1232-41. doi: 10.1016/j.micinf.2011.07.003. Epub 2011 Jul 26.


Automation in clinical bacteriology: what system to choose?

Greub G, Prod'hom G.

Clin Microbiol Infect. 2011 May;17(5):655-60. doi: 10.1111/j.1469-0691.2011.03513.x. Review.

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