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Items: 44

1.

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations.

Castelle CJ, Brown CT, Anantharaman K, Probst AJ, Huang RH, Banfield JF.

Nat Rev Microbiol. 2018 Oct;16(10):629-645. doi: 10.1038/s41579-018-0076-2.

PMID:
30181663
2.

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon.

Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MK, Banfield JF.

Microbiome. 2018 Jul 3;6(1):122. doi: 10.1186/s40168-018-0499-z.

3.

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.

Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, Gu JD.

Microbiome. 2018 Jun 8;6(1):102. doi: 10.1186/s40168-018-0488-2.

4.

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.

Sieber CMK, Probst AJ, Sharrar A, Thomas BC, Hess M, Tringe SG, Banfield JF.

Nat Microbiol. 2018 Jul;3(7):836-843. doi: 10.1038/s41564-018-0171-1. Epub 2018 May 28.

PMID:
29807988
5.
6.

Assessment of UV-C-induced water disinfection by differential PCR-based quantification of bacterial DNA damage.

Nocker A, Shah M, Dannenmann B, Schulze-Osthoff K, Wingender J, Probst AJ.

J Microbiol Methods. 2018 Jun;149:89-95. doi: 10.1016/j.mimet.2018.03.007. Epub 2018 Mar 31. No abstract available.

PMID:
29608927
7.

Genome-reconstruction for eukaryotes from complex natural microbial communities.

West PT, Probst AJ, Grigoriev IV, Thomas BC, Banfield JF.

Genome Res. 2018 Apr;28(4):569-580. doi: 10.1101/gr.228429.117. Epub 2018 Mar 1.

8.

Transitory microbial habitat in the hyperarid Atacama Desert.

Schulze-Makuch D, Wagner D, Kounaves SP, Mangelsdorf K, Devine KG, de Vera JP, Schmitt-Kopplin P, Grossart HP, Parro V, Kaupenjohann M, Galy A, Schneider B, Airo A, Frösler J, Davila AF, Arens FL, Cáceres L, Cornejo FS, Carrizo D, Dartnell L, DiRuggiero J, Flury M, Ganzert L, Gessner MO, Grathwohl P, Guan L, Heinz J, Hess M, Keppler F, Maus D, McKay CP, Meckenstock RU, Montgomery W, Oberlin EA, Probst AJ, Sáenz JS, Sattler T, Schirmack J, Sephton MA, Schloter M, Uhl J, Valenzuela B, Vestergaard G, Wörmer L, Zamorano P.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2670-2675. doi: 10.1073/pnas.1714341115. Epub 2018 Feb 26.

9.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

Probst AJ, Ladd B, Jarett JK, Geller-McGrath DE, Sieber CMK, Emerson JB, Anantharaman K, Thomas BC, Malmstrom RR, Stieglmeier M, Klingl A, Woyke T, Ryan MC, Banfield JF.

Nat Microbiol. 2018 Mar;3(3):328-336. doi: 10.1038/s41564-017-0098-y. Epub 2018 Jan 29.

10.

Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture.

Marozava S, Mouttaki H, Müller H, Laban NA, Probst AJ, Meckenstock RU.

Biodegradation. 2018 Feb;29(1):23-39. doi: 10.1007/s10532-017-9811-z. Epub 2017 Nov 24.

11.

Reply to Delmont and Eren: Strain variants and population structure during the Deepwater Horizon oil spill.

Probst AJ, Hu P, Sun CL, Dubinsky EA, Sieber CMK, Banfield JF, Andersen GL.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E8950-E8952. doi: 10.1073/pnas.1712466114. Epub 2017 Oct 10. No abstract available.

12.

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics.

Finstad KM, Probst AJ, Thomas BC, Andersen GL, Demergasso C, Echeverría A, Amundson RG, Banfield JF.

Front Microbiol. 2017 Jul 28;8:1435. doi: 10.3389/fmicb.2017.01435. eCollection 2017.

13.

Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.

Hu P, Dubinsky EA, Probst AJ, Wang J, Sieber CMK, Tom LM, Gardinali PR, Banfield JF, Atlas RM, Andersen GL.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):7432-7437. doi: 10.1073/pnas.1703424114. Epub 2017 Jun 26.

14.

Human age and skin physiology shape diversity and abundance of Archaea on skin.

Moissl-Eichinger C, Probst AJ, Birarda G, Auerbach A, Koskinen K, Wolf P, Holman HN.

Sci Rep. 2017 Jun 22;7(1):4039. doi: 10.1038/s41598-017-04197-4.

15.

New CRISPR-Cas systems from uncultivated microbes.

Burstein D, Harrington LB, Strutt SC, Probst AJ, Anantharaman K, Thomas BC, Doudna JA, Banfield JF.

Nature. 2017 Feb 9;542(7640):237-241. doi: 10.1038/nature21059. Epub 2016 Dec 22.

16.

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone.

Butterfield CN, Li Z, Andeer PF, Spaulding S, Thomas BC, Singh A, Hettich RL, Suttle KB, Probst AJ, Tringe SG, Northen T, Pan C, Banfield JF.

PeerJ. 2016 Nov 8;4:e2687. eCollection 2016.

17.

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.

18.

A new view of the tree of life.

Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, Thomas BC, Banfield JF.

Nat Microbiol. 2016 Apr 11;1:16048. doi: 10.1038/nmicrobiol.2016.48.

PMID:
27572647
19.

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales.

Bird JT, Baker BJ, Probst AJ, Podar M, Lloyd KG.

Front Microbiol. 2016 Aug 5;7:1221. doi: 10.3389/fmicb.2016.01221. eCollection 2016.

20.

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation.

Mayer T, Blachowicz A, Probst AJ, Vaishampayan P, Checinska A, Swarmer T, de Leon P, Venkateswaran K.

Microbiome. 2016 Jun 2;4(1):22. doi: 10.1186/s40168-016-0167-0.

21.

Urban Dust Microbiome: Impact on Later Atopy and Wheezing.

Tischer C, Weikl F, Probst AJ, Standl M, Heinrich J, Pritsch K.

Environ Health Perspect. 2016 Dec;124(12):1919-1923. Epub 2016 May 27.

22.

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF.

Environ Microbiol. 2017 Feb;19(2):459-474. doi: 10.1111/1462-2920.13362. Epub 2016 Jul 7.

PMID:
27112493
23.

Fungal and Bacterial Communities in Indoor Dust Follow Different Environmental Determinants.

Weikl F, Tischer C, Probst AJ, Heinrich J, Markevych I, Jochner S, Pritsch K.

PLoS One. 2016 Apr 21;11(4):e0154131. doi: 10.1371/journal.pone.0154131. eCollection 2016.

24.

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum.

Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield JF.

PeerJ. 2016 Jan 28;4:e1607. doi: 10.7717/peerj.1607. eCollection 2016.

25.

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.

Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF.

Nat Commun. 2016 Feb 3;7:10613. doi: 10.1038/ncomms10613.

26.

A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.

Weinmaier T, Probst AJ, La Duc MT, Ciobanu D, Cheng JF, Ivanova N, Rattei T, Vaishampayan P.

Microbiome. 2015 Dec 8;3:62. doi: 10.1186/s40168-015-0129-y.

27.

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities.

Checinska A, Probst AJ, Vaishampayan P, White JR, Kumar D, Stepanov VG, Fox GE, Nilsson HR, Pierson DL, Perry J, Venkateswaran K.

Microbiome. 2015 Oct 27;3:50. doi: 10.1186/s40168-015-0116-3.

28.

Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes.

Mahnert A, Vaishampayan P, Probst AJ, Auerbach A, Moissl-Eichinger C, Venkateswaran K, Berg G.

PLoS One. 2015 Aug 14;10(8):e0134848. doi: 10.1371/journal.pone.0134848. eCollection 2015.

29.

S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence.

Perras AK, Daum B, Ziegler C, Takahashi LK, Ahmed M, Wanner G, Klingl A, Leitinger G, Kolb-Lenz D, Gribaldo S, Auerbach A, Mora M, Probst AJ, Bellack A, Moissl-Eichinger C.

Front Microbiol. 2015 Jun 9;6:543. doi: 10.3389/fmicb.2015.00543. eCollection 2015.

30.

New perspectives on microbial community distortion after whole-genome amplification.

Probst AJ, Weinmaier T, DeSantis TZ, Santo Domingo JW, Ashbolt N.

PLoS One. 2015 May 26;10(5):e0124158. doi: 10.1371/journal.pone.0124158. eCollection 2015.

31.

"Altiarchaeales": uncultivated archaea from the subsurface.

Probst AJ, Moissl-Eichinger C.

Life (Basel). 2015 May 12;5(2):1381-95. doi: 10.3390/life5021381. Review.

32.

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem.

Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF.

ISME J. 2015 Dec;9(12):2697-711. doi: 10.1038/ismej.2015.66. Epub 2015 Apr 28.

33.

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments.

Moissl-Eichinger C, Auerbach AK, Probst AJ, Mahnert A, Tom L, Piceno Y, Andersen GL, Venkateswaran K, Rettberg P, Barczyk S, Pukall R, Berg G.

Sci Rep. 2015 Mar 17;5:9156. doi: 10.1038/srep09156.

34.

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface.

Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield JF, Moissl-Eichinger C.

Nat Commun. 2014 Nov 26;5:5497. doi: 10.1038/ncomms6497.

PMID:
25425419
35.

Grappling archaea: ultrastructural analyses of an uncultivated, cold-loving archaeon, and its biofilm.

Perras AK, Wanner G, Klingl A, Mora M, Auerbach AK, Heinz V, Probst AJ, Huber H, Rachel R, Meck S, Moissl-Eichinger C.

Front Microbiol. 2014 Aug 5;5:397. doi: 10.3389/fmicb.2014.00397. eCollection 2014.

36.

An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile.

Miezeiewski M, Schnaufer T, Muravsky M, Wang S, Caro-Aguilar I, Secore S, Thiriot DS, Hsu C, Rogers I, DeSantis T, Kuczynski J, Probst AJ, Chehoud C, Steger R, Warrington J, Bodmer JL, Heinrichs JH.

ISME J. 2015 Feb;9(2):321-32. doi: 10.1038/ismej.2014.127. Epub 2014 Jul 18.

37.

Coupling genetic and chemical microbiome profiling reveals heterogeneity of archaeome and bacteriome in subsurface biofilms that are dominated by the same archaeal species.

Probst AJ, Birarda G, Holman HY, DeSantis TZ, Wanner G, Andersen GL, Perras AK, Meck S, Völkel J, Bechtel HA, Wirth R, Moissl-Eichinger C.

PLoS One. 2014 Jun 27;9(6):e99801. doi: 10.1371/journal.pone.0099801. eCollection 2014.

38.

Quantification of encapsulated bioburden in spacecraft polymer materials by cultivation-dependent and molecular methods.

Bauermeister A, Mahnert A, Auerbach A, Böker A, Flier N, Weber C, Probst AJ, Moissl-Eichinger C, Haberer K.

PLoS One. 2014 Apr 15;9(4):e94265. doi: 10.1371/journal.pone.0094265. eCollection 2014.

39.

Microbial community structures of novel Icelandic hot spring systems revealed by PhyloChip G3 analysis.

Krebs JE, Vaishampayan P, Probst AJ, Tom LM, Marteinsson VT, Andersen GL, Venkateswaran K.

Astrobiology. 2014 Mar;14(3):229-40. doi: 10.1089/ast.2013.1008. Epub 2014 Mar 3.

PMID:
24588539
40.

Lessons learned from the microbial analysis of the Herschel spacecraft during assembly, integration, and test operations.

Moissl-Eichinger C, Pukall R, Probst AJ, Stieglmeier M, Schwendner P, Mora M, Barczyk S, Bohmeier M, Rettberg P.

Astrobiology. 2013 Dec;13(12):1125-39. doi: 10.1089/ast.2013.1024. Epub 2013 Dec 6. Review.

PMID:
24313230
41.

Archaea on human skin.

Probst AJ, Auerbach AK, Moissl-Eichinger C.

PLoS One. 2013 Jun 12;8(6):e65388. doi: 10.1371/journal.pone.0065388. Print 2013.

42.

Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm.

Probst AJ, Holman HY, DeSantis TZ, Andersen GL, Birarda G, Bechtel HA, Piceno YM, Sonnleitner M, Venkateswaran K, Moissl-Eichinger C.

ISME J. 2013 Mar;7(3):635-51. doi: 10.1038/ismej.2012.133. Epub 2012 Nov 22.

43.

New perspectives on viable microbial communities in low-biomass cleanroom environments.

Vaishampayan P, Probst AJ, La Duc MT, Bargoma E, Benardini JN, Andersen GL, Venkateswaran K.

ISME J. 2013 Feb;7(2):312-24. doi: 10.1038/ismej.2012.114. Epub 2012 Oct 11.

44.

Staphylococcus condimenti sp. nov., from soy sauce mash, and Staphylococcus carnosus (Schleifer and Fischer 1982) subsp. utilis subsp. nov.

Probst AJ, Hertel C, Richter L, Wassill L, Ludwig W, Hammes WP.

Int J Syst Bacteriol. 1998 Jul;48 Pt 3:651-8.

PMID:
9734019

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