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Items: 42

1.

Repeated species radiations in the recent evolution of the key marine phytoplankton lineage Gephyrocapsa.

Bendif EM, Nevado B, Wong ELY, Hagino K, Probert I, Young JR, Rickaby REM, Filatov DA.

Nat Commun. 2019 Sep 17;10(1):4234. doi: 10.1038/s41467-019-12169-7.

2.

Inhibition of Bacterial and Fungal Biofilm Formation by 675 Extracts from Microalgae and Cyanobacteria.

Cepas V, López Y, Gabasa Y, Martins CB, Ferreira JD, Correia MJ, Santos LMA, Oliveira F, Ramos V, Reis M, Castelo-Branco R, Morais J, Vasconcelos V, Probert I, Guilloud E, Mehiri M, Soto SM.

Antibiotics (Basel). 2019 Jun 12;8(2). pii: E77. doi: 10.3390/antibiotics8020077.

3.

NMR characterization and evaluation of antibacterial and antiobiofilm activity of organic extracts from stationary phase batch cultures of five marine microalgae (Dunaliella sp., D. salina, Chaetoceros calcitrans, C. gracilis and Tisochrysis lutea).

Iglesias MJ, Soengas R, Probert I, Guilloud E, Gourvil P, Mehiri M, López Y, Cepas V, Gutiérrez-Del-Río I, Redondo-Blanco S, Villar CJ, Lombó F, Soto S, Ortiz FL.

Phytochemistry. 2019 Aug;164:192-205. doi: 10.1016/j.phytochem.2019.05.001. Epub 2019 Jun 4.

PMID:
31174083
4.

X-ray nanotomography of coccolithophores reveals that coccolith mass and segment number correlate with grid size.

Beuvier T, Probert I, Beaufort L, Suchéras-Marx B, Chushkin Y, Zontone F, Gibaud A.

Nat Commun. 2019 Feb 14;10(1):751. doi: 10.1038/s41467-019-08635-x.

5.

The requirement for calcification differs between ecologically important coccolithophore species.

Walker CE, Taylor AR, Langer G, Durak GM, Heath S, Probert I, Tyrrell T, Brownlee C, Wheeler GL.

New Phytol. 2018 Oct;220(1):147-162. doi: 10.1111/nph.15272. Epub 2018 Jun 19.

6.

A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle.

Partensky F, Six C, Ratin M, Garczarek L, Vaulot D, Probert I, Calteau A, Gourvil P, Marie D, Grébert T, Bouchier C, Le Panse S, Gachenot M, Rodríguez F, Garrido JL.

Sci Rep. 2018 Jun 14;8(1):9142. doi: 10.1038/s41598-018-27542-7.

7.

A de novo approach to disentangle partner identity and function in holobiont systems.

Meng A, Marchet C, Corre E, Peterlongo P, Alberti A, Da Silva C, Wincker P, Pelletier E, Probert I, Decelle J, Le Crom S, Not F, Bittner L.

Microbiome. 2018 Jun 9;6(1):105. doi: 10.1186/s40168-018-0481-9.

8.

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.

Meng A, Corre E, Probert I, Gutierrez-Rodriguez A, Siano R, Annamale A, Alberti A, Da Silva C, Wincker P, Le Crom S, Not F, Bittner L.

Mol Ecol. 2018 May;27(10):2365-2380. doi: 10.1111/mec.14579. Epub 2018 May 3.

PMID:
29624751
9.

Recent Reticulate Evolution in the Ecologically Dominant Lineage of Coccolithophores.

Bendif el M, Probert I, Díaz-Rosas F, Thomas D, van den Engh G, Young JR, von Dassow P.

Front Microbiol. 2016 May 24;7:784. doi: 10.3389/fmicb.2016.00784. eCollection 2016.

10.

A role for diatom-like silicon transporters in calcifying coccolithophores.

Durak GM, Taylor AR, Walker CE, Probert I, de Vargas C, Audic S, Schroeder D, Brownlee C, Wheeler GL.

Nat Commun. 2016 Feb 4;7:10543. doi: 10.1038/ncomms10543.

11.

Decrease in coccolithophore calcification and CO2 since the middle Miocene.

Bolton CT, Hernández-Sánchez MT, Fuertes MÁ, González-Lemos S, Abrevaya L, Mendez-Vicente A, Flores JA, Probert I, Giosan L, Johnson J, Stoll HM.

Nat Commun. 2016 Jan 14;7:10284. doi: 10.1038/ncomms10284.

12.

Eco-physiological adaptation shapes the response of calcifying algae to nutrient limitation.

Šupraha L, Gerecht AC, Probert I, Henderiks J.

Sci Rep. 2015 Nov 12;5:16499. doi: 10.1038/srep16499.

13.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
14.

Morphological and Phylogenetic Characterization of New Gephyrocapsa Isolates Suggests Introgressive Hybridization in the Emiliania/Gephyrocapsa Complex (Haptophyta).

Bendif el M, Probert I, Young JR, von Dassow P.

Protist. 2015 Jul;166(3):323-36. doi: 10.1016/j.protis.2015.05.003. Epub 2015 May 14.

PMID:
26037697
15.

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima-Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E.

Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.

16.

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

Decelle J, Romac S, Stern RF, Bendif el M, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F, Gourvil P, Dos Santos AL, Probert I, Vaulot D, de Vargas C, Christen R.

Mol Ecol Resour. 2015 Nov;15(6):1435-45. doi: 10.1111/1755-0998.12401. Epub 2015 Apr 6.

PMID:
25740460
17.

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton.

von Dassow P, John U, Ogata H, Probert I, Bendif el M, Kegel JU, Audic S, Wincker P, Da Silva C, Claverie JM, Doney S, Glover DM, Flores DM, Herrera Y, Lescot M, Garet-Delmas MJ, de Vargas C.

ISME J. 2015 Jun;9(6):1365-77. doi: 10.1038/ismej.2014.221. Epub 2014 Dec 2.

18.

The chimerical and multifaceted marine acoel Symsagittifera roscoffensis: from photosymbiosis to brain regeneration.

Bailly X, Laguerre L, Correc G, Dupont S, Kurth T, Pfannkuchen A, Entzeroth R, Probert I, Vinogradov S, Lechauve C, Garet-Delmas MJ, Reichert H, Hartenstein V.

Front Microbiol. 2014 Oct 2;5:498. doi: 10.3389/fmicb.2014.00498. eCollection 2014. Review.

19.

Brandtodinium gen. nov. and B. nutricula comb. Nov. (Dinophyceae), a dinoflagellate commonly found in symbiosis with polycystine radiolarians.

Probert I, Siano R, Poirier C, Decelle J, Biard T, Tuji A, Suzuki N, Not F.

J Phycol. 2014 Apr;50(2):388-99. doi: 10.1111/jpy.12174. Epub 2014 Mar 19.

PMID:
26988195
20.

Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle.

Carrier G, Garnier M, Le Cunff L, Bougaran G, Probert I, De Vargas C, Corre E, Cadoret JP, Saint-Jean B.

PLoS One. 2014 Jan 29;9(1):e86889. doi: 10.1371/journal.pone.0086889. eCollection 2014.

21.

Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta).

Bendif el M, Probert I, Carmichael M, Romac S, Hagino K, de Vargas C.

J Phycol. 2014 Feb;50(1):140-8. doi: 10.1111/jpy.12147. Epub 2014 Jan 13.

PMID:
26988015
22.

Bioprospecting marine plankton.

Abida H, Ruchaud S, Rios L, Humeau A, Probert I, De Vargas C, Bach S, Bowler C.

Mar Drugs. 2013 Nov 14;11(11):4594-611. doi: 10.3390/md11114594. Review.

23.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R.

Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604. doi: 10.1093/nar/gks1160. Epub 2012 Nov 27.

24.

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C.

Mol Ecol. 2013 Jan;22(1):87-101. doi: 10.1111/mec.12108. Epub 2012 Nov 19.

PMID:
23163508
25.

An original mode of symbiosis in open ocean plankton.

Decelle J, Probert I, Bittner L, Desdevises Y, Colin S, de Vargas C, Galí M, Simó R, Not F.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18000-5. doi: 10.1073/pnas.1212303109. Epub 2012 Oct 15.

26.

In situ survey of life cycle phases of the coccolithophore Emiliania huxleyi (Haptophyta).

Frada MJ, Bidle KD, Probert I, de Vargas C.

Environ Microbiol. 2012 Jun;14(6):1558-69. doi: 10.1111/j.1462-2920.2012.02745.x. Epub 2012 Apr 17.

PMID:
22507290
27.

NEW EVIDENCE FOR MORPHOLOGICAL AND GENETIC VARIATION IN THE COSMOPOLITAN COCCOLITHOPHORE EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) FROM THE COX1b-ATP4 GENES(1).

Hagino K, Bendif el M, Young JR, Kogame K, Probert I, Takano Y, Horiguchi T, de Vargas C, Okada H.

J Phycol. 2011 Oct;47(5):1164-76. doi: 10.1111/j.1529-8817.2011.01053.x. Epub 2011 Sep 13.

PMID:
27020197
28.

Sensitivity of coccolithophores to carbonate chemistry and ocean acidification.

Beaufort L, Probert I, de Garidel-Thoron T, Bendif EM, Ruiz-Pino D, Metzl N, Goyet C, Buchet N, Coupel P, Grelaud M, Rost B, Rickaby RE, de Vargas C.

Nature. 2011 Aug 3;476(7358):80-3. doi: 10.1038/nature10295.

PMID:
21814280
29.

Coccolithophores: functional biodiversity, enzymes and bioprospecting.

Reid EL, Worthy CA, Probert I, Ali ST, Love J, Napier J, Littlechild JA, Somerfield PJ, Allen MJ.

Mar Drugs. 2011;9(4):586-602. doi: 10.3390/md9040586. Epub 2011 Apr 11.

30.

Integrative taxonomy of the Pavlovophyceae (Haptophyta): a reassessment.

Bendif el M, Probert I, Hervé A, Billard C, Goux D, Lelong C, Cadoret JP, Véron B.

Protist. 2011 Nov;162(5):738-61. doi: 10.1016/j.protis.2011.05.001. Epub 2011 Jun 28. Erratum in: Protist. 2012 Mar;163(2):324-5.

PMID:
21715228
31.

Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.

Lepere C, Demura M, Kawachi M, Romac S, Probert I, Vaulot D.

FEMS Microbiol Ecol. 2011 Jun;76(3):513-23. doi: 10.1111/j.1574-6941.2011.01072.x. Epub 2011 Mar 16.

32.

A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum.

Minge MA, Shalchian-Tabrizi K, Tørresen OK, Takishita K, Probert I, Inagaki Y, Klaveness D, Jakobsen KS.

BMC Evol Biol. 2010 Jun 21;10:191. doi: 10.1186/1471-2148-10-191.

33.

Pelagodinium gen. nov. and P. béii comb. nov., a dinoflagellate symbiont of planktonic foraminifera.

Siano R, Montresor M, Probert I, Not F, de Vargas C.

Protist. 2010 Jul;161(3):385-99. doi: 10.1016/j.protis.2010.01.002. Epub 2010 Feb 11.

PMID:
20149979
34.

Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell.

von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie JM, de Vargas C.

Genome Biol. 2009;10(10):R114. doi: 10.1186/gb-2009-10-10-r114. Epub 2009 Oct 15.

35.

A time line of the environmental genetics of the haptophytes.

Liu H, Aris-Brosou S, Probert I, de Vargas C.

Mol Biol Evol. 2010 Jan;27(1):161-76. doi: 10.1093/molbev/msp222.

PMID:
19762334
36.

Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans.

Liu H, Probert I, Uitz J, Claustre H, Aris-Brosou S, Frada M, Not F, de Vargas C.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12803-8. doi: 10.1073/pnas.0905841106. Epub 2009 Jul 21.

37.

COCCOLITH FUNCTION AND MORPHOGENESIS: INSIGHTS FROM APPENDAGE-BEARING COCCOLITHOPHORES OF THE FAMILY SYRACOSPHAERACEAE (HAPTOPHYTA)(1).

Young JR, Andruleit H, Probert I.

J Phycol. 2009 Feb;45(1):213-26. doi: 10.1111/j.1529-8817.2008.00643.x.

PMID:
27033659
38.

The "Cheshire Cat" escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection.

Frada M, Probert I, Allen MJ, Wilson WH, de Vargas C.

Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15944-9. doi: 10.1073/pnas.0807707105. Epub 2008 Sep 29.

39.

The use of physical and virtual infrastructures for the validation of algal cryopreservation methods in international culture collections.

Day JG, Iorenz M, Wilding TA, Friedl T, Harding K, Pröschold T, Brennan D, Müller J, Santos LM, Santos MF, Osório HC, Amaral R, Lukesova A, Hrouzek P, Lukes M, Elster J, Lukavsky J, Probert I, Ryan MJ, Benson EE.

Cryo Letters. 2007 Sep-Oct;28(5):359-76. Erratum in: Cryo Letters. 2007 Nov-Dec;28(6):401.

PMID:
18075705
40.

Microsatellite cross-amplification in coccolithophores: application in population diversity studies.

Iglesias-Rodríguez MD, Probert I, Batley J.

Hereditas. 2006 Dec;143(2006):99-102.

41.

Potential and limitations of Sr/Ca ratios in coccolith carbonate: new perspectives from cultures and monospecific samples from sediments.

Stoll HM, Ziveri P, Geisen M, Probert I, Young JR.

Philos Trans A Math Phys Eng Sci. 2002 Apr 15;360(1793):719-47. Review.

PMID:
12804301
42.

Pseudo-cryptic speciation in coccolithophores.

Saez AG, Probert I, Geisen M, Quinn P, Young JR, Medlin LK.

Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7163-8. Epub 2003 May 20.

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