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Items: 1 to 50 of 114

1.

Rapid sex-specific evolution of age at maturity is shaped by genetic architecture in Atlantic salmon.

Czorlich Y, Aykanat T, Erkinaro J, Orell P, Primmer CR.

Nat Ecol Evol. 2018 Nov;2(11):1800-1807. doi: 10.1038/s41559-018-0681-5. Epub 2018 Oct 1.

PMID:
30275465
2.

Genomic signatures of fine-scale local selection in Atlantic salmon suggest involvement of sexual maturation, energy homeostasis and immune defence-related genes.

Pritchard VL, Mäkinen H, Vähä JP, Erkinaro J, Orell P, Primmer CR.

Mol Ecol. 2018 Jun;27(11):2560-2575. doi: 10.1111/mec.14705. Epub 2018 May 21.

PMID:
29691916
3.

Genomic signatures of parasite-driven natural selection in north European Atlantic salmon (Salmo salar).

Zueva KJ, Lumme J, Veselov AE, Kent MP, Primmer CR.

Mar Genomics. 2018 Jun;39:26-38. doi: 10.1016/j.margen.2018.01.001. Epub 2018 Apr 10.

PMID:
29650372
4.

Modularity Facilitates Flexible Tuning of Plastic and Evolutionary Gene Expression Responses during Early Divergence.

Mäkinen H, Sävilammi T, Papakostas S, Leder E, Vøllestad LA, Primmer CR.

Genome Biol Evol. 2018 Jan 1;10(1):77-93. doi: 10.1093/gbe/evx278.

5.

Harnessing the Power of Genomics to Secure the Future of Seafood.

Bernatchez L, Wellenreuther M, Araneda C, Ashton DT, Barth JMI, Beacham TD, Maes GE, Martinsohn JT, Miller KM, Naish KA, Ovenden JR, Primmer CR, Young Suk H, Therkildsen NO, Withler RE.

Trends Ecol Evol. 2017 Sep;32(9):665-680. doi: 10.1016/j.tree.2017.06.010. Epub 2017 Aug 14. Review.

6.

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.

7.

Rapid, broad-scale gene expression evolution in experimentally harvested fish populations.

Uusi-Heikkilä S, Sävilammi T, Leder E, Arlinghaus R, Primmer CR.

Mol Ecol. 2017 Aug;26(15):3954-3967. doi: 10.1111/mec.14179. Epub 2017 Jun 5.

PMID:
28500794
8.

Regulatory Architecture of Gene Expression Variation in the Threespine Stickleback Gasterosteus aculeatus.

Pritchard VL, Viitaniemi HM, McCairns RJ, Merilä J, Nikinmaa M, Primmer CR, Leder EH.

G3 (Bethesda). 2017 Jan 5;7(1):165-178. doi: 10.1534/g3.116.033241.

9.

From population genomics to conservation and management: a workflow for targeted analysis of markers identified using genome-wide approaches in Atlantic salmon Salmo salar.

Aykanat T, Lindqvist M, Pritchard VL, Primmer CR.

J Fish Biol. 2016 Dec;89(6):2658-2679. doi: 10.1111/jfb.13149. Epub 2016 Oct 6.

PMID:
27709620
10.

Diversity and linkage disequilibrium in farmed Tasmanian Atlantic salmon.

Kijas J, Elliot N, Kube P, Evans B, Botwright N, King H, Primmer CR, Verbyla K.

Anim Genet. 2017 Apr;48(2):237-241. doi: 10.1111/age.12513. Epub 2016 Oct 4.

PMID:
27699807
11.

Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees.

Pritchard VL, Erkinaro J, Kent MP, Niemelä E, Orell P, Lien S, Primmer CR.

Evol Appl. 2016 Aug 18;9(8):1017-31. doi: 10.1111/eva.12407. eCollection 2016 Sep.

12.

Reply to Garner et al.

Shafer ABA, Wolf JBW, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, Österling EM, Ouborg NJ, Piccolo J, Primmer CR, Reed FA, Roumet M, Salmona J, Schwartz MK, Segelbacher G, Thaulow J, Valtonen M, Vergeer P, Weissensteiner M, Wheat CW, Vilà C, Zieliński P.

Trends Ecol Evol. 2016 Feb;31(2):83-84. doi: 10.1016/j.tree.2015.11.010. Epub 2015 Dec 17. No abstract available.

PMID:
26704456
13.

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon.

Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR.

Nature. 2015 Dec 17;528(7582):405-8. doi: 10.1038/nature16062. Epub 2015 Nov 4.

PMID:
26536110
14.

Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population.

Aykanat T, Johnston SE, Orell P, Niemelä E, Erkinaro J, Primmer CR.

Mol Ecol. 2015 Oct;24(20):5158-74. doi: 10.1111/mec.13383. Epub 2015 Oct 12.

PMID:
26363183
15.

Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling (Thymallus thymallus) Subpopulations Adapted to Different Thermal Environments.

Mäkinen H, Papakostas S, Vøllestad LA, Leder EH, Primmer CR.

J Hered. 2016 Jan;107(1):82-9. doi: 10.1093/jhered/esv069. Epub 2015 Aug 21.

PMID:
26297731
16.

The evolutionary legacy of size-selective harvesting extends from genes to populations.

Uusi-Heikkilä S, Whiteley AR, Kuparinen A, Matsumura S, Venturelli PA, Wolter C, Slate J, Primmer CR, Meinelt T, Killen SS, Bierbach D, Polverino G, Ludwig A, Arlinghaus R.

Evol Appl. 2015 Jul;8(6):597-620. doi: 10.1111/eva.12268. Epub 2015 May 27.

17.

Generation of a neutral FST baseline for testing local adaptation on gill raker number within and between European whitefish ecotypes in the Baltic Sea basin.

Ozerov MY, Himberg M, Aykanat T, Sendek DS, Hägerstrand H, Verliin A, Krause T, Olsson J, Primmer CR, Vasemägi A.

J Evol Biol. 2015 May;28(5):1170-83. doi: 10.1111/jeb.12645. Epub 2015 May 12.

18.

Sympatric divergence and clinal variation in multiple coloration traits of Ficedula flycatchers.

Laaksonen T, Sirkiä PM, Calhim S, Brommer JE, Leskinen PK, Primmer CR, Adamík P, Artemyev AV, Belskii E, Both C, Bureš S, Burgess MD, Doligez B, Forsman JT, Grinkov V, Hoffmann U, Ivankina E, Král M, Krams I, Lampe HM, Moreno J, Mägi M, Nord A, Potti J, Ravussin PA, Sokolov L.

J Evol Biol. 2015 Apr;28(4):779-90. doi: 10.1111/jeb.12604. Epub 2015 Mar 17.

19.

Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding.

Mäkinen H, Vasemägi A, McGinnity P, Cross TF, Primmer CR.

Evol Appl. 2015 Jan;8(1):93-107. doi: 10.1111/eva.12230. Epub 2014 Nov 20.

20.

Genomics and the challenging translation into conservation practice.

Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, Höglund J, Jensen EL, Krause J, Kristensen TN, Krützen M, McKay JK, Norman AJ, Ogden R, Österling EM, Ouborg NJ, Piccolo J, Popović D, Primmer CR, Reed FA, Roumet M, Salmona J, Schenekar T, Schwartz MK, Segelbacher G, Senn H, Thaulow J, Valtonen M, Veale A, Vergeer P, Vijay N, Vilà C, Weissensteiner M, Wennerström L, Wheat CW, Zieliński P.

Trends Ecol Evol. 2015 Feb;30(2):78-87. doi: 10.1016/j.tree.2014.11.009. Epub 2014 Dec 17.

PMID:
25534246
21.

The evolution and adaptive potential of transcriptional variation in sticklebacks--signatures of selection and widespread heritability.

Leder EH, McCairns RJ, Leinonen T, Cano JM, Viitaniemi HM, Nikinmaa M, Primmer CR, Merilä J.

Mol Biol Evol. 2015 Mar;32(3):674-89. doi: 10.1093/molbev/msu328. Epub 2014 Nov 25.

22.

Differences in the metabolic response to temperature acclimation in nine-spined stickleback (Pungitius pungitius) populations from contrasting thermal environments.

Bruneaux M, Nikinmaa M, Laine VN, Lindström K, Primmer CR, Vasemägi A.

J Exp Zool A Ecol Genet Physiol. 2014 Dec;321(10):550-65. doi: 10.1002/jez.1889. Epub 2014 Nov 11.

PMID:
25389079
23.

Genome-wide SNP analysis reveals a genetic basis for sea-age variation in a wild population of Atlantic salmon (Salmo salar).

Johnston SE, Orell P, Pritchard VL, Kent MP, Lien S, Niemelä E, Erkinaro J, Primmer CR.

Mol Ecol. 2014 Jul;23(14):3452-68. doi: 10.1111/mec.12832.

PMID:
24931807
24.

Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions.

Papakostas S, Vøllestad LA, Bruneaux M, Aykanat T, Vanoverbeke J, Ning M, Primmer CR, Leder EH.

Nat Commun. 2014 Jun 3;5:4071. doi: 10.1038/ncomms5071.

25.

Molecular pedigree reconstruction and estimation of evolutionary parameters in a wild Atlantic salmon river system with incomplete sampling: a power analysis.

Aykanat T, Johnston SE, Cotter D, Cross TF, Poole R, Prodőhl PA, Reed T, Rogan G, McGinnity P, Primmer CR.

BMC Evol Biol. 2014 Mar 31;14(1):68. doi: 10.1186/1471-2148-14-68.

26.

Footprints of directional selection in wild Atlantic salmon populations: evidence for parasite-driven evolution?

Zueva KJ, Lumme J, Veselov AE, Kent MP, Lien S, Primmer CR.

PLoS One. 2014 Mar 26;9(3):e91672. doi: 10.1371/journal.pone.0091672. eCollection 2014.

27.

Proteome variance differences within populations of European whitefish (Coregonus lavaretus) originating from contrasting salinity environments.

Papakostas S, Vasemägi A, Himberg M, Primmer CR.

J Proteomics. 2014 Jun 13;105:144-50. doi: 10.1016/j.jprot.2013.12.019. Epub 2014 Jan 7.

PMID:
24406297
28.

Temporal variation of genetic composition in Atlantic salmon populations from the Western White Sea Basin: influence of anthropogenic factors?

Ozerov MY, Veselov AE, Lumme J, Primmer CR.

BMC Genet. 2013 Sep 23;14:88. doi: 10.1186/1471-2156-14-88.

29.

Genetic mixed-stock analysis of lake-run brown trout Salmo trutta fishery catches in the Inari Basin, northern Finland: implications for conservation and management.

Swatdipong A, Vasemägi A, Niva T, Koljonen ML, Primmer CR.

J Fish Biol. 2013 Sep;83(3):598-617. doi: 10.1111/jfb.12199.

PMID:
23991877
30.

Fish scales and SNP chips: SNP genotyping and allele frequency estimation in individual and pooled DNA from historical samples of Atlantic salmon (Salmo salar).

Johnston SE, Lindqvist M, Niemelä E, Orell P, Erkinaro J, Kent MP, Lien S, Vähä JP, Vasemägi A, Primmer CR.

BMC Genomics. 2013 Jul 3;14:439. doi: 10.1186/1471-2164-14-439.

31.

Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research.

Primmer CR, Papakostas S, Leder EH, Davis MJ, Ragan MA.

Mol Ecol. 2013 Jun;22(12):3216-41. doi: 10.1111/mec.12309. Review.

PMID:
23763602
32.

Transcription and redox enzyme activities: comparison of equilibrium and disequilibrium levels in the three-spined stickleback.

Nikinmaa M, McCairns RJ, Nikinmaa MW, Vuori KA, Kanerva M, Leinonen T, Primmer CR, Merilä J, Leder EH.

Proc Biol Sci. 2013 Jan 30;280(1755):20122974. doi: 10.1098/rspb.2012.2974. Print 2013 Mar 22.

33.

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon.

Vasemägi A, Nilsson J, McGinnity P, Cross T, O'Reilly P, Glebe B, Peng B, Berg PR, Primmer CR.

Comp Funct Genomics. 2012;2012:628204. doi: 10.1155/2012/628204. Epub 2012 Dec 27.

34.

The proteomics of feather development in pied flycatchers (Ficedula hypoleuca) with different plumage coloration.

Leskinen PK, Laaksonen T, Ruuskanen S, Primmer CR, Leder EH.

Mol Ecol. 2012 Dec;21(23):5762-77. doi: 10.1111/mec.12073. Epub 2012 Oct 30.

PMID:
23110392
35.

Genetic differentiation between two sympatric morphs of the blind Iran cave barb Iranocypris typhlops.

Hashemzadeh Segherloo I, Bernatchez L, Golzarianpour K, Abdoli A, Primmer CR, Bakhtiary M.

J Fish Biol. 2012 Oct;81(5):1747-53. doi: 10.1111/j.1095-8649.2012.03389.x.

PMID:
23020572
36.

Phylogenetic status of brown trout Salmo trutta populations in five rivers from the southern Caspian Sea and two inland lake basins, Iran: a morphogenetic approach.

Hashemzadeh Segherloo I, Farahmand H, Abdoli A, Bernatchez L, Primmer CR, Swatdipong A, Karami M, Khalili B.

J Fish Biol. 2012 Oct;81(5):1479-500. doi: 10.1111/j.1095-8649.2012.03428.x.

PMID:
23020557
37.

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

Bourret V, Kent MP, Primmer CR, Vasemägi A, Karlsson S, Hindar K, McGinnity P, Verspoor E, Bernatchez L, Lien S.

Mol Ecol. 2013 Feb;22(3):532-51. doi: 10.1111/mec.12003. Epub 2012 Sep 12.

PMID:
22967111
38.

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach.

Bruneaux M, Johnston SE, Herczeg G, Merilä J, Primmer CR, Vasemägi A.

Mol Ecol. 2013 Feb;22(3):565-82. doi: 10.1111/j.1365-294X.2012.05749.x. Epub 2012 Sep 3.

PMID:
22943747
39.

Heterozygosity-behaviour correlations in nine-spined stickleback (Pungitius pungitius) populations: contrasting effects at random and functional loci.

Laine VN, Herczeg G, Shikano T, Primmer CR.

Mol Ecol. 2012 Oct;21(19):4872-84. doi: 10.1111/j.1365-294X.2012.05741.x. Epub 2012 Aug 31.

PMID:
22938054
40.

A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus).

Papakostas S, Vasemägi A, Vähä JP, Himberg M, Peil L, Primmer CR.

Mol Ecol. 2012 Jul;21(14):3516-30. doi: 10.1111/j.1365-294X.2012.05553.x. Epub 2012 Apr 4.

PMID:
22486940
41.

Candidate genes for colour and vision exhibit signals of selection across the pied flycatcher (Ficedula hypoleuca) breeding range.

Lehtonen PK, Laaksonen T, Artemyev AV, Belskii E, Berg PR, Both C, Buggiotti L, Bureš S, Burgess MD, Bushuev AV, Krams I, Moreno J, Mägi M, Nord A, Potti J, Ravussin PA, Sirkiä PM, Sætre GP, Winkel W, Primmer CR.

Heredity (Edinb). 2012 Apr;108(4):431-40. doi: 10.1038/hdy.2011.93. Epub 2011 Oct 26.

42.

High Gyrodactylus salaris infection rate in triploid Atlantic salmon Salmo salar.

Ozerov MY, Lumme J, Päkk P, Rintamäki P, Zietara MS, Barskaya Y, Lebedeva D, Saadre E, Gross R, Primmer CR, Vasemägi A.

Dis Aquat Organ. 2010 Sep 2;91(2):129-36. doi: 10.3354/dao02242.

43.

Genetics of local adaptation in salmonid fishes.

Primmer CR.

Heredity (Edinb). 2011 Mar;106(3):401-3. doi: 10.1038/hdy.2010.158. No abstract available.

44.

Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon (Salmo salar L.).

Ellis JS, Gilbey J, Armstrong A, Balstad T, Cauwelier E, Cherbonnel C, Consuegra S, Coughlan J, Cross TF, Crozier W, Dillane E, Ensing D, García de Leániz C, García-Vázquez E, Griffiths AM, Hindar K, Hjorleifsdottir S, Knox D, Machado-Schiaffino G, McGinnity P, Meldrup D, Nielsen EE, Olafsson K, Primmer CR, Prodohl P, Stradmeyer L, Vähä JP, Verspoor E, Wennevik V, Stevens JR.

Genetica. 2011 Mar;139(3):353-67. doi: 10.1007/s10709-011-9554-4. Epub 2011 Feb 1.

45.

Molecular evolution of the metazoan PHD-HIF oxygen-sensing system.

Rytkönen KT, Williams TA, Renshaw GM, Primmer CR, Nikinmaa M.

Mol Biol Evol. 2011 Jun;28(6):1913-26. doi: 10.1093/molbev/msr012. Epub 2011 Jan 12.

PMID:
21228399
46.

Strong gene flow and lack of stable population structure in the face of rapid adaptation to local temperature in a spring-spawning salmonid, the European grayling (Thymallus thymallus).

Junge C, Vøllestad LA, Barson NJ, Haugen TO, Otero J, Sætre GP, Leder EH, Primmer CR.

Heredity (Edinb). 2011 Mar;106(3):460-71. doi: 10.1038/hdy.2010.160. Epub 2011 Jan 12.

47.

Temporally stable population-specific differences in run timing of one-sea-winter Atlantic salmon returning to a large river system.

Vähä JP, Erkinaro J, Niemelä E, Primmer CR, Saloniemi I, Johansen M, Svenning M, Brørs S.

Evol Appl. 2011 Jan;4(1):39-53. doi: 10.1111/j.1752-4571.2010.00131.x. Epub 2010 May 10.

48.

High level of population genetic structuring in lake-run brown trout, Salmo trutta, of the Inari Basin, northern Finland.

Swatdipong A, Vasemägi A, Niva T, Koljonen ML, Primmer CR.

J Fish Biol. 2010 Dec;77(9):2048-71. doi: 10.1111/j.1095-8649.2010.02784.x. Epub 2010 Oct 12.

PMID:
21133916
49.

Proteomic profiling of early life stages of European grayling (Thymallus thymallus).

Papakostas S, Vøllestad LA, Primmer CR, Leder EH.

J Proteome Res. 2010 Sep 3;9(9):4790-800. doi: 10.1021/pr100507s.

PMID:
20602527
50.

Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon.

Vasemägi A, Gross R, Palm D, Paaver T, Primmer CR.

BMC Genomics. 2010 Mar 8;11:156. doi: 10.1186/1471-2164-11-156.

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