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Items: 1 to 50 of 70

1.

EXOSC10/Rrp6 is post-translationally regulated in male germ cells and controls the onset of spermatogenesis.

Jamin SP, Petit FG, Kervarrec C, Smagulova F, Illner D, Scherthan H, Primig M.

Sci Rep. 2017 Nov 8;7(1):15065. doi: 10.1038/s41598-017-14643-y.

2.

The protein expression landscape of mitosis and meiosis in diploid budding yeast.

Becker E, Com E, Lavigne R, Guilleux MH, Evrard B, Pineau C, Primig M.

J Proteomics. 2017 Mar 6;156:5-19. doi: 10.1016/j.jprot.2016.12.016. Epub 2017 Jan 3.

3.

Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.

Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M.

RNA Biol. 2016 Sep;13(9):772-82. doi: 10.1080/15476286.2016.1191738. Epub 2016 Jun 30.

4.

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine.

Gely-Pernot A, Hao C, Becker E, Stuparevic I, Kervarrec C, Chalmel F, Primig M, Jégou B, Smagulova F.

BMC Genomics. 2015 Oct 30;16:885. doi: 10.1186/s12864-015-2095-y.

5.

Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification.

Lardenois A, Becker E, Walther T, Law MJ, Xie B, Demougin P, Strich R, Primig M.

Mol Genet Genomics. 2015 Oct;290(5):2031-46. doi: 10.1007/s00438-015-1051-5. Epub 2015 May 10.

6.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

7.

The histone deacetylase Rpd3/Sin3/Ume6 complex represses an acetate-inducible isoform of VTH2 in fermenting budding yeast cells.

Stuparevic I, Becker E, Law MJ, Primig M.

FEBS Lett. 2015 Apr 2;589(8):924-32. doi: 10.1016/j.febslet.2015.02.022. Epub 2015 Feb 26.

8.

The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae.

Liu Y, Stuparevic I, Xie B, Becker E, Law MJ, Primig M.

Mol Microbiol. 2015 May;96(4):861-74. doi: 10.1111/mmi.12976. Epub 2015 Mar 21. Erratum in: Mol Microbiol. 2016 Jan;99(1):217.

9.

Integrated RNA- and protein profiling of fermentation and respiration in diploid budding yeast provides insight into nutrient control of cell growth and development.

Becker E, Liu Y, Lardenois A, Walther T, Horecka J, Stuparevic I, Law MJ, Lavigne R, Evrard B, Demougin P, Riffle M, Strich R, Davis RW, Pineau C, Primig M.

J Proteomics. 2015 Apr 24;119:30-44. doi: 10.1016/j.jprot.2015.01.015. Epub 2015 Feb 4.

10.

Combining RNA and protein profiling data with network interactions identifies genes associated with spermatogenesis in mouse and human.

Petit FG, Kervarrec C, Jamin SP, Smagulova F, Hao C, Becker E, Jégou B, Chalmel F, Primig M.

Biol Reprod. 2015 Mar;92(3):71. doi: 10.1095/biolreprod.114.126250. Epub 2015 Jan 21.

PMID:
25609838
11.

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.

Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, Primig M.

Nucleic Acids Res. 2015 Jan;43(1):115-28. doi: 10.1093/nar/gku1185. Epub 2014 Dec 3.

12.

Developmental stage dependent metabolic regulation during meiotic differentiation in budding yeast.

Walther T, Létisse F, Peyriga L, Alkim C, Liu Y, Lardenois A, Martin-Yken H, Portais JC, Primig M, François J.

BMC Biol. 2014 Sep 2;12:60. doi: 10.1186/s12915-014-0060-x.

13.

High-resolution profiling of novel transcribed regions during rat spermatogenesis.

Chalmel F, Lardenois A, Evrard B, Rolland AD, Sallou O, Dumargne MC, Coiffec I, Collin O, Primig M, Jégou B.

Biol Reprod. 2014 Jul;91(1):5. doi: 10.1095/biolreprod.114.118166. Epub 2014 Apr 16.

PMID:
24740603
14.

Expression screening of cancer/testis genes in prostate cancer identifies NR6A1 as a novel marker of disease progression and aggressiveness.

Mathieu R, Evrard B, Fromont G, Rioux-Leclercq N, Godet J, Cathelineau X, Guillé F, Primig M, Chalmel F.

Prostate. 2013 Jul;73(10):1103-14. doi: 10.1002/pros.22659. Epub 2013 Mar 26.

PMID:
23532770
15.

Genome-wide identification of Sox8-, and Sox9-dependent genes during early post-natal testis development in the mouse.

Chalmel F, Lardenois A, Georg I, Barrionuevo F, Demougin P, Jégou B, Scherer G, Primig M.

Andrology. 2013 Mar;1(2):281-92. doi: 10.1111/j.2047-2927.2012.00049.x. Epub 2013 Jan 13.

16.

Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast.

van Werven FJ, Neuert G, Hendrick N, Lardenois A, Buratowski S, van Oudenaarden A, Primig M, Amon A.

Cell. 2012 Sep 14;150(6):1170-81. doi: 10.1016/j.cell.2012.06.049. Epub 2012 Sep 6.

17.

Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility.

Chalmel F, Lardenois A, Evrard B, Mathieu R, Feig C, Demougin P, Gattiker A, Schulze W, Jégou B, Kirchhoff C, Primig M.

Hum Reprod. 2012 Nov;27(11):3233-48. doi: 10.1093/humrep/des301. Epub 2012 Aug 27.

PMID:
22926843
18.

The bioinformatics tool box for reproductive biology.

Primig M.

Biochim Biophys Acta. 2012 Dec;1822(12):1880-95. doi: 10.1016/j.bbadis.2012.05.018. Epub 2012 Jun 9. Review.

19.

GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development.

Britto R, Sallou O, Collin O, Michaux G, Primig M, Chalmel F.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W458-65. doi: 10.1093/nar/gks380. Epub 2012 May 8.

20.

Differential marker protein expression specifies rarefaction zone-containing human Adark spermatogonia.

von Kopylow K, Staege H, Spiess AN, Schulze W, Will H, Primig M, Kirchhoff C.

Reproduction. 2012 Jan 1;143(1):45-57. doi: 10.1530/REP-11-0290. Epub 2011 Nov 1.

21.

Direct iterative protein profiling (DIPP) - an innovative method for large-scale protein detection applied to budding yeast mitosis.

Lavigne R, Becker E, Liu Y, Evrard B, Lardenois A, Primig M, Pineau C.

Mol Cell Proteomics. 2012 Feb;11(2):M111.012682. doi: 10.1074/mcp.M111.012682. Epub 2011 Oct 13.

22.

Muscle gene expression is a marker of amyotrophic lateral sclerosis severity.

Pradat PF, Dubourg O, de Tapia M, di Scala F, Dupuis L, Lenglet T, Bruneteau G, Salachas F, Lacomblez L, Corvol JC, Demougin P, Primig M, Meininger V, Loeffler JP, Gonzalez de Aguilar JL.

Neurodegener Dis. 2012;9(1):38-52. doi: 10.1159/000329723. Epub 2011 Sep 21.

PMID:
21934272
23.

BioMart Central Portal: an open database network for the biological community.

Guberman JM, Ai J, Arnaiz O, Baran J, Blake A, Baldock R, Chelala C, Croft D, Cros A, Cutts RJ, Di Génova A, Forbes S, Fujisawa T, Gadaleta E, Goodstein DM, Gundem G, Haggarty B, Haider S, Hall M, Harris T, Haw R, Hu S, Hubbard S, Hsu J, Iyer V, Jones P, Katayama T, Kinsella R, Kong L, Lawson D, Liang Y, Lopez-Bigas N, Luo J, Lush M, Mason J, Moreews F, Ndegwa N, Oakley D, Perez-Llamas C, Primig M, Rivkin E, Rosanoff S, Shepherd R, Simon R, Skarnes B, Smedley D, Sperling L, Spooner W, Stevenson P, Stone K, Teague J, Wang J, Wang J, Whitty B, Wong DT, Wong-Erasmus M, Yao L, Youens-Clark K, Yung C, Zhang J, Kasprzyk A.

Database (Oxford). 2011 Sep 18;2011:bar041. doi: 10.1093/database/bar041. Print 2011.

24.

XY Sox9 embryonic loss-of-function mouse mutants show complete sex reversal and produce partially fertile XY oocytes.

Lavery R, Lardenois A, Ranc-Jianmotamedi F, Pauper E, Gregoire EP, Vigier C, Moreilhon C, Primig M, Chaboissier MC.

Dev Biol. 2011 Jun 1;354(1):111-22. doi: 10.1016/j.ydbio.2011.03.029. Epub 2011 Apr 3.

25.

Profiling spermatogenic failure in adult testes bearing Sox9-deficient Sertoli cells identifies genes involved in feminization, inflammation and stress.

Lardenois A, Chalmel F, Barrionuevo F, Demougin P, Scherer G, Primig M.

Reprod Biol Endocrinol. 2010 Dec 23;8:154. doi: 10.1186/1477-7827-8-154.

26.

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.

Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1058-63. doi: 10.1073/pnas.1016459108. Epub 2010 Dec 13.

27.

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle.

Lardenois A, Gattiker A, Collin O, Chalmel F, Primig M.

Database (Oxford). 2010 Dec 11;2010:baq030. doi: 10.1093/database/baq030. Print 2010.

28.

Mitotic expression of Spo13 alters M-phase progression and nucleolar localization of Cdc14 in budding yeast.

Varela E, Schlecht U, Moina A, Fackenthal JD, Washburn BK, Niederhauser-Wiederkehr C, Tsai-Pflugfelder M, Primig M, Gasser SM, Esposito RE.

Genetics. 2010 Jul;185(3):841-54. doi: 10.1534/genetics.109.113746. Epub 2010 Apr 20.

29.

Screening for biomarkers of spermatogonia within the human testis: a whole genome approach.

von Kopylow K, Kirchhoff C, Jezek D, Schulze W, Feig C, Primig M, Steinkraus V, Spiess AN.

Hum Reprod. 2010 May;25(5):1104-12. doi: 10.1093/humrep/deq053. Epub 2010 Mar 5.

PMID:
20208059
30.

Fhl5/Act, a CREM-binding transcriptional activator required for normal sperm maturation and morphology, is not essential for testicular gene expression.

Lardenois A, Chalmel F, Demougin P, Kotaja N, Sassone-Corsi P, Primig M.

Reprod Biol Endocrinol. 2009 Nov 24;7:133. doi: 10.1186/1477-7827-7-133.

31.

Proteome analysis and genome-wide regulatory motif prediction identify novel potentially sex-hormone regulated proteins in rat efferent ducts.

Trépos-Pouplard M, Lardenois A, Staub C, Guitton N, Dorval-Coiffec I, Pineau C, Primig M, Jégou B.

Int J Androl. 2010 Oct 1;33(5):661-74. doi: 10.1111/j.1365-2605.2009.01006.x. Epub 2009 Nov 10.

PMID:
19906187
32.

MIMAS 3.0 is a Multiomics Information Management and Annotation System.

Gattiker A, Hermida L, Liechti R, Xenarios I, Collin O, Rougemont J, Primig M.

BMC Bioinformatics. 2009 May 18;10:151. doi: 10.1186/1471-2105-10-151.

33.

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. doi: 10.1091/mbc.E07-12-1242. Epub 2008 Feb 27.

34.

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86. doi: 10.1186/1471-2105-9-86.

35.

Gene profiling of skeletal muscle in an amyotrophic lateral sclerosis mouse model.

Gonzalez de Aguilar JL, Niederhauser-Wiederkehr C, Halter B, De Tapia M, Di Scala F, Demougin P, Dupuis L, Primig M, Meininger V, Loeffler JP.

Physiol Genomics. 2008 Jan 17;32(2):207-18. Epub 2007 Nov 13.

PMID:
18000159
36.

Cross-platform gene expression signature of human spermatogenic failure reveals inflammatory-like response.

Spiess AN, Feig C, Schulze W, Chalmel F, Cappallo-Obermann H, Primig M, Kirchhoff C.

Hum Reprod. 2007 Nov;22(11):2936-46. Epub 2007 Oct 6.

PMID:
17921478
37.

Toward understanding the core meiotic transcriptome in mammals and its implications for somatic cancer.

Chalmel F, Lardenois A, Primig M.

Ann N Y Acad Sci. 2007 Dec;1120:1-15. Epub 2007 Oct 2. Review.

PMID:
17911412
38.

The conserved transcriptome in human and rodent male gametogenesis.

Chalmel F, Rolland AD, Niederhauser-Wiederkehr C, Chung SS, Demougin P, Gattiker A, Moore J, Patard JJ, Wolgemuth DJ, Jégou B, Primig M.

Proc Natl Acad Sci U S A. 2007 May 15;104(20):8346-51. Epub 2007 May 2.

39.

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.

Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, Philippsen P, Primig M.

BMC Genomics. 2007 Jan 9;8:9.

40.

The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction.

Gattiker A, Niederhauser-Wiederkehr C, Moore J, Hermida L, Primig M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D457-62. Epub 2006 Dec 1.

41.

MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.

Hermida L, Schaad O, Demougin P, Descombes P, Primig M.

BMC Bioinformatics. 2006 Apr 5;7:190.

42.

goCluster integrates statistical analysis and functional interpretation of microarray expression data.

Wrobel G, Chalmel F, Primig M.

Bioinformatics. 2005 Sep 1;21(17):3575-7. Epub 2005 Jul 14.

PMID:
16020468
43.

Novel response to microtubule perturbation in meiosis.

Hochwagen A, Wrobel G, Cartron M, Demougin P, Niederhauser-Wiederkehr C, Boselli MG, Primig M, Amon A.

Mol Cell Biol. 2005 Jun;25(11):4767-81.

44.

Functional annotation and network reconstruction through cross-platform integration of microarray data.

Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH.

Nat Biotechnol. 2005 Feb;23(2):238-43. Epub 2005 Jan 16.

PMID:
15654329
45.
46.

The Ashbya Genome Database (AGD)--a tool for the yeast community and genome biologists.

Hermida L, Brachat S, Voegeli S, Philippsen P, Primig M.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D348-52.

47.

NPR1 kinase and RSP5-BUL1/2 ubiquitin ligase control GLN3-dependent transcription in Saccharomyces cerevisiae.

Crespo JL, Helliwell SB, Wiederkehr C, Demougin P, Fowler B, Primig M, Hall MN.

J Biol Chem. 2004 Sep 3;279(36):37512-7. Epub 2004 Jul 9.

48.

An enhancer directs differential expression of the linked Mrf4 and Myf5 myogenic regulatory genes in the mouse.

Chang TH, Primig M, Hadchouel J, Tajbakhsh S, Rocancourt D, Fernandez A, Kappler R, Scherthan H, Buckingham M.

Dev Biol. 2004 May 15;269(2):595-608.

49.

Transcriptional signature of an adult brain tumor in Drosophila.

Loop T, Leemans R, Stiefel U, Hermida L, Egger B, Xie F, Primig M, Certa U, Fischbach KF, Reichert H, Hirth F.

BMC Genomics. 2004 Apr 16;5(1):24.

50.

Database model and specification of GermOnline Release 2.0, a cross-species community annotation knowledgebase on germ cell differentiation.

Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Koch R, Schlecht U, Hermida L, Masdoua B, Ishii R, Cassen V, Yamamoto M, Lane C, Cherry M, Lamb N, Primig M.

Bioinformatics. 2004 Mar 22;20(5):808-11. Epub 2004 Jan 29.

PMID:
14751982

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