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Items: 47

1.

AbPredict 2: a server for accurate and unstrained structure prediction of antibody variable domains.

Lapidoth G, Parker J, Prilusky J, Fleishman SJ.

Bioinformatics. 2019 May 1;35(9):1591-1593. doi: 10.1093/bioinformatics/bty822.

2.

Automated Design of Efficient and Functionally Diverse Enzyme Repertoires.

Khersonsky O, Lipsh R, Avizemer Z, Ashani Y, Goldsmith M, Leader H, Dym O, Rogotner S, Trudeau DL, Prilusky J, Amengual-Rigo P, Guallar V, Tawfik DS, Fleishman SJ.

Mol Cell. 2018 Oct 4;72(1):178-186.e5. doi: 10.1016/j.molcel.2018.08.033. Epub 2018 Sep 27.

3.

Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.

Goldenzweig A, Goldsmith M, Hill SE, Gertman O, Laurino P, Ashani Y, Dym O, Unger T, Albeck S, Prilusky J, Lieberman RL, Aharoni A, Silman I, Sussman JL, Tawfik DS, Fleishman SJ.

Mol Cell. 2018 Apr 19;70(2):380. doi: 10.1016/j.molcel.2018.03.035. No abstract available.

4.

McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences.

Tickotsky N, Sagiv T, Prilusky J, Shifrut E, Friedman N.

Bioinformatics. 2017 Sep 15;33(18):2924-2929. doi: 10.1093/bioinformatics/btx286.

PMID:
28481982
5.

Interplay between hydrophobicity and the positive-inside rule in determining membrane-protein topology.

Elazar A, Weinstein JJ, Prilusky J, Fleishman SJ.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10340-5. doi: 10.1073/pnas.1605888113. Epub 2016 Aug 25.

6.

Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.

Goldenzweig A, Goldsmith M, Hill SE, Gertman O, Laurino P, Ashani Y, Dym O, Unger T, Albeck S, Prilusky J, Lieberman RL, Aharoni A, Silman I, Sussman JL, Tawfik DS, Fleishman SJ.

Mol Cell. 2016 Jul 21;63(2):337-346. doi: 10.1016/j.molcel.2016.06.012. Epub 2016 Jul 14. Erratum in: Mol Cell. 2018 Apr 19;70(2):380.

7.

The Development of a Novel qPCR Assay-Set for Identifying Fecal Contamination Originating from Domestic Fowls and Waterfowl in Israel.

Ohad S, Ben-Dor S, Prilusky J, Kravitz V, Dassa B, Chalifa-Caspi V, Kashi Y, Rorman E.

Front Microbiol. 2016 Feb 17;7:145. doi: 10.3389/fmicb.2016.00145. eCollection 2016.

8.

Proteopedia entry: "Tutorial: How we get the oxygen we breathe".

Prilusky J, Hodis E.

Biochem Mol Biol Educ. 2012 Sep-Oct;40(5):339. doi: 10.1002/bmb.20646. No abstract available.

9.

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Frenkel-Morgenstern M, Lacroix V, Ezkurdia I, Levin Y, Gabashvili A, Prilusky J, Del Pozo A, Tress M, Johnson R, Guigo R, Valencia A.

Genome Res. 2012 Jul;22(7):1231-42. doi: 10.1101/gr.130062.111. Epub 2012 May 15.

10.

Thermo-resistant intrinsically disordered proteins are efficient 20S proteasome substrates.

Tsvetkov P, Myers N, Moscovitz O, Sharon M, Prilusky J, Shaul Y.

Mol Biosyst. 2012 Jan;8(1):368-73. doi: 10.1039/c1mb05283g. Epub 2011 Oct 25.

PMID:
22027891
11.

Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function.

Hodis E, Prilusky J, Sussman JL.

Biochem Mol Biol Educ. 2010 Sep;38(5):341-2. doi: 10.1002/bmb.20431. No abstract available.

12.

Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.

Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.

J Struct Biol. 2011 Aug;175(2):244-52. doi: 10.1016/j.jsb.2011.04.011. Epub 2011 Apr 23.

PMID:
21536137
13.

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells.

Frenkel-Morgenstern M, Cohen AA, Geva-Zatorsky N, Eden E, Prilusky J, Issaeva I, Sigal A, Cohen-Saidon C, Liron Y, Cohen L, Danon T, Perzov N, Alon U.

Nucleic Acids Res. 2010 Jan;38(Database issue):D508-12. doi: 10.1093/nar/gkp808. Epub 2009 Oct 9.

14.

Assessment of disorder predictions in CASP8.

Noivirt-Brik O, Prilusky J, Sussman JL.

Proteins. 2009;77 Suppl 9:210-6. doi: 10.1002/prot.22586.

PMID:
19774619
15.

Assessment of CASP8 structure predictions for template free targets.

Ben-David M, Noivirt-Brik O, Paz A, Prilusky J, Sussman JL, Levy Y.

Proteins. 2009;77 Suppl 9:50-65. doi: 10.1002/prot.22591.

PMID:
19774550
16.

Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs.

Prilusky J, Bibi E.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6662-6. doi: 10.1073/pnas.0902029106. Epub 2009 Apr 6.

17.

Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.

Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.

Genome Biol. 2008;9(8):R121. doi: 10.1186/gb-2008-9-8-r121. Epub 2008 Aug 3.

18.

Protein production and purification.

Structural Genomics Consortium; China Structural Genomics Consortium; Northeast Structural Genomics Consortium, Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC.

Nat Methods. 2008 Feb;5(2):135-46. doi: 10.1038/nmeth.f.202. Review. Erratum in: Nat Methods. 2008 Apr;5(4):369. Hallberg, B Martin [added].

19.

Structural disorder serves as a weak signal for intracellular protein degradation.

Tompa P, Prilusky J, Silman I, Sussman JL.

Proteins. 2008 May 1;71(2):903-9.

PMID:
18004785
20.

A server and database for dipole moments of proteins.

Felder CE, Prilusky J, Silman I, Sussman JL.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W512-21. Epub 2007 May 25.

21.

Honing the in silico toolkit for detecting protein disorder.

Esnouf RM, Hamer R, Sussman JL, Silman I, Trudgian D, Yang ZR, Prilusky J.

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1260-6. Epub 2006 Sep 19. Review.

PMID:
17001103
22.

SPINE bioinformatics and data-management aspects of high-throughput structural biology.

Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, Guillemot F, Hamer R, Ben Jelloul M, Laskowski RA, Laurent T, Longhi S, Lopez R, Luchinat C, Malet H, Mochel T, Morris RJ, Moulinier L, Oinn T, Pajon A, Peleg Y, Perrakis A, Poch O, Prilusky J, Rachedi A, Ripp R, Rosato A, Silman I, Stuart DI, Sussman JL, Thierry JC, Thompson JD, Thornton JM, Unger T, Vaughan B, Vranken W, Watson JD, Whamond G, Henrick K.

Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1184-95. Epub 2006 Sep 19. Review.

PMID:
17001095
23.

Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC). This paper was presented at ICCBM10.

Albeck S, Burstein Y, Dym O, Jacobovitch Y, Levi N, Meged R, Michael Y, Peleg Y, Prilusky J, Schreiber G, Silman I, Unger T, Sussman JL.

Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1364-72. Epub 2005 Sep 28.

PMID:
16204888
24.

SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment.

Sobolev V, Eyal E, Gerzon S, Potapov V, Babor M, Prilusky J, Edelman M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W39-43.

25.

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.

Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL.

Bioinformatics. 2005 Aug 15;21(16):3435-8. Epub 2005 Jun 14.

PMID:
15955783
26.

HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories.

Prilusky J, Oueillet E, Ulryck N, Pajon A, Bernauer J, Krimm I, Quevillon-Cheruel S, Leulliot N, Graille M, Liger D, Trésaugues L, Sussman JL, Janin J, van Tilbeurgh H, Poupon A.

Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):671-8. Epub 2005 May 26.

PMID:
15930618
27.

G protein-coupled receptors show unusual patterns of intrinsic unfolding.

Jaakola VP, Prilusky J, Sussman JL, Goldman A.

Protein Eng Des Sel. 2005 Feb;18(2):103-10. Epub 2005 Mar 24.

PMID:
15790574
28.

AutoDep: a web-based system for deposition and validation of macromolecular structural -information.

Lin D, Manning NO, Jiang J, Abola EE, Stampf D, Prilusky J, Sussman JL.

Acta Crystallogr D Biol Crystallogr. 2000 Jul;56(Pt 7):828-41.

PMID:
10930830
29.

The protein data bank. Bridging the gap between the sequence and 3D structure world.

Sussman JL, Abola EE, Lin D, Jiang J, Manning NO, Prilusky J.

Genetica. 1999;106(1-2):149-58. Review.

PMID:
10710721
30.

Automated analysis of interatomic contacts in proteins.

Sobolev V, Sorokine A, Prilusky J, Abola EE, Edelman M.

Bioinformatics. 1999 Apr;15(4):327-32.

PMID:
10320401
31.

Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules.

Sussman JL, Lin D, Jiang J, Manning NO, Prilusky J, Ritter O, Abola EE.

Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1078-84.

PMID:
10089483
32.

GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support.

Rebhan M, Chalifa-Caspi V, Prilusky J, Lancet D.

Bioinformatics. 1998;14(8):656-64.

PMID:
9789091
34.

GeneCards: integrating information about genes, proteins and diseases.

Rebhan M, Chalifa-Caspi V, Prilusky J, Lancet D.

Trends Genet. 1997 Apr;13(4):163. No abstract available.

PMID:
9097728
35.

Protein Data Bank archives of three-dimensional macromolecular structures.

Abola EE, Sussman JL, Prilusky J, Manning NO.

Methods Enzymol. 1997;277:556-71. No abstract available.

PMID:
9379928
36.

The Protein Data Bank: Current Status and Future Challenges.

Abola EE, Manning NO, Prilusky J, Stampf DR, Sussman JL.

J Res Natl Inst Stand Technol. 1996 May-Jun;101(3):231-241.

37.

Computers in biology: the future is today.

Prilusky J.

Arch Biol Med Exp (Santiago). 1986;19(3-4):323-8. Review.

PMID:
8816081
38.

A dual modulatory effect of progesterone on the LHRH-induced LH release.

Prilusky J, Vermouth NT, Deis RP.

J Steroid Biochem. 1984 Jul;21(1):107-10.

PMID:
6379303
39.

Hypothermia induced by systematically administered epinephrine in the rat.

Prilusky J, Castro-Vázquez A.

Acta Physiol Pharmacol Latinoam. 1984;34(3):323-5. No abstract available.

PMID:
6241786
40.
41.
43.

Induction of maternal behavior in the virgin rat by lactating-rat brain extracts.

Prilusky J.

Physiol Behav. 1981 Feb;26(2):149-52. No abstract available.

PMID:
7232518
44.

Sensory control of the hypothalamus and the neuroendocrine system.

Brooks CM, Koizumi K, Taleisnik S, Ferreyra Moyano H, Beltramino C, Deis RP, Prilusky J.

Acta Physiol Lat Am. 1980;30(3):159-70.

PMID:
7202323
45.
46.

Prolactin release induced by suckling in lactating rats after L-DOPA treatment.

Deis RP, Prilusky J.

J Reprod Fertil. 1976 Jan;46(1):265-7. No abstract available.

PMID:
1271349
47.

Effect of L-dopa on milk ejection and prolactin release in lactating rats.

Prilusky J, Deis RP.

J Endocrinol. 1975 Dec;67(3):397-401.

PMID:
1206326

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