Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 29

1.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

PMID:
29088705
2.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7.

3.

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.

Maritz JM, Sullivan SA, Prill RJ, Aksoy E, Scheid P, Carlton JM.

PLoS One. 2017 Apr 6;12(4):e0175527. doi: 10.1371/journal.pone.0175527. eCollection 2017.

4.

Microbiome changes through ontogeny of a tick pathogen vector.

Zolnik CP, Prill RJ, Falco RC, Daniels TJ, Kolokotronis SO.

Mol Ecol. 2016 Oct;25(19):4963-77. doi: 10.1111/mec.13832. Epub 2016 Sep 18.

PMID:
27588381
5.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):97-97.e3. doi: 10.1016/j.cels.2015.07.006. Epub 2015 Jul 29. No abstract available.

6.

Modern Methods for Delineating Metagenomic Complexity.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):6-7. doi: 10.1016/j.cels.2015.07.007. Epub 2015 Jul 29. No abstract available.

7.

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.

Patro R, Norel R, Prill RJ, Saez-Rodriguez J, Lorenz P, Steinbeck F, Ziems B, Luštrek M, Barbarini N, Tiengo A, Bellazzi R, Thiesen HJ, Stolovitzky G, Kingsford C.

BMC Bioinformatics. 2016 Apr 8;17:155. doi: 10.1186/s12859-016-1008-7.

8.

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Afshinnekoo E, Meydan C, Chowdhury S, Jaroudi D, Boyer C, Bernstein N, Maritz JM, Reeves D, Gandara J, Chhangawala S, Ahsanuddin S, Simmons A, Nessel T, Sundaresh B, Pereira E, Jorgensen E, Kolokotronis SO, Kirchberger N, Garcia I, Gandara D, Dhanraj S, Nawrin T, Saletore Y, Alexander N, Vijay P, Hénaff EM, Zumbo P, Walsh M, O'Mullan GD, Tighe S, Dudley JT, Dunaif A, Ennis S, O'Halloran E, Magalhaes TR, Boone B, Jones AL, Muth TR, Paolantonio KS, Alter E, Schadt EE, Garbarino J, Prill RJ, Carlton JM, Levy S, Mason CE.

Cell Syst. 2015 Jul 29;1(1):72-87. Epub 2015 Mar 3.

9.

Noise-driven causal inference in biomolecular networks.

Prill RJ, Vogel R, Cecchi GA, Altan-Bonnet G, Stolovitzky G.

PLoS One. 2015 Jun 1;10(6):e0125777. doi: 10.1371/journal.pone.0125777. eCollection 2015.

10.

DREAMTools: a Python package for scoring collaborative challenges.

Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, de la Fuente A, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, Pratap A, Prill RJ, Weirauch MT, Costello JC, Stolovitzky G, Saez-Rodriguez J.

Version 2. F1000Res. 2015 Oct 9 [revised 2016 Jan 1];4:1030. doi: 10.12688/f1000research.7118.2. eCollection 2015.

11.

Mold contamination in schools with either high or low prevelance of asthma.

Vesper S, Prill R, Wymer L, Adkins L, Williams R, Fulk F.

Pediatr Allergy Immunol. 2015 Feb;26(1):49-53. doi: 10.1111/pai.12324.

PMID:
25511604
12.

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.

Huang H, Tata S, Prill RJ.

Bioinformatics. 2013 Jan 1;29(1):135-6. doi: 10.1093/bioinformatics/bts647. Epub 2012 Nov 29.

PMID:
23202745
13.

Wisdom of crowds for robust gene network inference.

Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium, Kellis M, Collins JJ, Stolovitzky G.

Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016.

14.

Crowdsourcing network inference: the DREAM predictive signaling network challenge.

Prill RJ, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Stolovitzky G.

Sci Signal. 2011 Aug 30;4(189):mr7. doi: 10.1126/scisignal.2002212.

15.

Revealing strengths and weaknesses of methods for gene network inference.

Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, Stolovitzky G.

Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6286-91. doi: 10.1073/pnas.0913357107. Epub 2010 Mar 22.

16.

Towards a rigorous assessment of systems biology models: the DREAM3 challenges.

Prill RJ, Marbach D, Saez-Rodriguez J, Sorger PK, Alexopoulos LG, Xue X, Clarke ND, Altan-Bonnet G, Stolovitzky G.

PLoS One. 2010 Feb 23;5(2):e9202. doi: 10.1371/journal.pone.0009202. Erratum in: PLoS One. 2010;5(3). doi: 10.1371/annotation/f633213a-dc4f-4bee-b6c5-72d50e7073b8.

17.

Lessons from the DREAM2 Challenges.

Stolovitzky G, Prill RJ, Califano A.

Ann N Y Acad Sci. 2009 Mar;1158:159-95. doi: 10.1111/j.1749-6632.2009.04497.x.

PMID:
19348640
18.

Dynamic properties of network motifs contribute to biological network organization.

Prill RJ, Iglesias PA, Levchenko A.

PLoS Biol. 2005 Nov;3(11):e343. Epub 2005 Oct 4.

19.

Associations between classroom CO2 concentrations and student attendance in Washington and Idaho.

Shendell DG, Prill R, Fisk WJ, Apte MG, Blake D, Faulkner D.

Indoor Air. 2004 Oct;14(5):333-41.

PMID:
15330793
20.

Mapping the ribonucleolytic active site of eosinophil-derived neurotoxin (EDN). High resolution crystal structures of EDN complexes with adenylic nucleotide inhibitors.

Leonidas DD, Boix E, Prill R, Suzuki M, Turton R, Minson K, Swaminathan GJ, Youle RJ, Acharya KR.

J Biol Chem. 2001 May 4;276(18):15009-17. Epub 2001 Jan 11.

21.

Acute effects of the skeletal muscle-specific immunotoxin ricin-mAb 35 on extraocular muscles of rabbits.

Christiansen SP, Sandnas A, Prill R, Youle RJ, McLoon LK.

Invest Ophthalmol Vis Sci. 2000 Oct;41(11):3402-9.

PMID:
11006231
22.

Engineering receptor-mediated cytotoxicity into human ribonucleases by steric blockade of inhibitor interaction.

Suzuki M, Saxena SK, Boix E, Prill RJ, Vasandani VM, Ladner JE, Sung C, Youle RJ.

Nat Biotechnol. 1999 Mar;17(3):265-70.

PMID:
10096294
23.

New methods of energy efficient radon mitigation.

Fisk WJ, Prill RJ, Wooley J, Bonnefous YC, Gadgil AJ, Riley WJ.

Health Phys. 1995 May;68(5):689-98.

PMID:
7730066
24.

Effectiveness of radon control techniques in fifteen homes.

Turk BH, Prill RJ, Fisk WJ, Grimsrud DT, Sextro RG.

J Air Waste Manage Assoc. 1991 May;41(5):723-34.

PMID:
1863451
25.
26.

Evaluation of radon mitigation systems in 14 houses over a two-year period.

Prill RJ, Fisk WJ, Turk BH.

J Air Waste Manage Assoc. 1990 May;40(5):740-8.

PMID:
2354048
27.

Characterizing the occurrence, sources, and variability of radon in Pacific Northwest homes.

Turk BH, Prill RJ, Grimsrud DT, Moed BA, Sextro RG.

J Air Waste Manage Assoc. 1990 Apr;40(4):498-506.

PMID:
2340149
28.

The effects of infiltration and insulation on the source strengths and indoor air pollution from combustion space heating appliances.

Traynor GW, Apte MG, Carruthers AR, Dillworth JF, Prill RJ, Grimsrud DT, Turk BH.

JAPCA. 1988 Aug;38(8):1011-5. No abstract available.

PMID:
3221254
29.

Chemosensitive neurons on the ventral medullary surface.

Schläfke ME, Pokorski M, See WR, Prill RK, Loeschcke HH.

Bull Physiopathol Respir (Nancy). 1975 Mar-Apr;11(2):277-84.

PMID:
1156720

Supplemental Content

Support Center