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Items: 29

1.

Integrated proteotranscriptomics of breast cancer reveals globally increased protein-mRNA concordance associated with subtypes and survival.

Tang W, Zhou M, Dorsey TH, Prieto DA, Wang XW, Ruppin E, Veenstra TD, Ambs S.

Genome Med. 2018 Dec 3;10(1):94. doi: 10.1186/s13073-018-0602-x.

2.

Protocol for the Analysis of Laser Capture Microdissected Fresh-Frozen Tissue Homogenates by Silver-Stained 1D SDS-PAGE.

Prieto DA, Whitely G, Johann DJ Jr, Blonder J.

Methods Mol Biol. 2018;1723:95-110. doi: 10.1007/978-1-4939-7558-7_4.

PMID:
29344855
3.

Preparation and Immunoaffinity Depletion of Fresh Frozen Tissue Homogenates for Mass Spectrometry-Based Proteomics in the Context of Drug Target/Biomarker Discovery.

Prieto DA, Chan KC, Johann DJ Jr, Ye X, Whitely G, Blonder J.

Methods Mol Biol. 2017;1647:71-90. doi: 10.1007/978-1-4939-7201-2_5.

PMID:
28808996
4.

Mammalian cell transient expression, non-affinity purification, and characterization of human recombinant IGFBP7, an IGF-1 targeting therapeutic protein.

Jiang MS, Yang X, Esposito D, Nelson E, Yuan J, Hopkins RF, Broadt T, Xiao Z, Colantonio S, Prieto DA, Welch AR, Creekmore SP, Mitra G, Zhu J.

Int Immunopharmacol. 2015 Dec;29(2):476-487. doi: 10.1016/j.intimp.2015.10.008. Epub 2015 Oct 23.

PMID:
26474694
5.

Mass spectrometry in cancer biomarker research: a case for immunodepletion of abundant blood-derived proteins from clinical tissue specimens.

Prieto DA, Johann DJ Jr, Wei BR, Ye X, Chan KC, Nissley DV, Simpson RM, Citrin DE, Mackall CL, Linehan WM, Blonder J.

Biomark Med. 2014;8(2):269-86. doi: 10.2217/bmm.13.101.

6.

Trypsin-mediated ¹⁸O/¹⁶O labeling for biomarker discovery.

Ye X, Chan KC, Prieto DA, Luke BT, Johann DJ Jr, Stockwin LH, Newton DL, Blonder J.

Methods Mol Biol. 2013;1002:133-49. doi: 10.1007/978-1-62703-360-2_12.

PMID:
23625401
7.

Proteomic analysis of frozen tissue samples using laser capture microdissection.

Mukherjee S, Rodriguez-Canales J, Hanson J, Emmert-Buck MR, Tangrea MA, Prieto DA, Blonder J, Johann DJ Jr.

Methods Mol Biol. 2013;1002:71-83. doi: 10.1007/978-1-62703-360-2_6.

PMID:
23625395
8.

Post-digestion ¹⁸O exchange/labeling for quantitative shotgun proteomics of membrane proteins.

Ye X, Luke BT, Johann DJ Jr, Chan KC, Prieto DA, Ono A, Veenstra TD, Blonder J.

Methods Mol Biol. 2012;893:223-40. doi: 10.1007/978-1-61779-885-6_15.

PMID:
22665304
9.

Profiling the erythrocyte membrane proteome isolated from patients diagnosed with chronic obstructive pulmonary disease.

Alexandre BM, Charro N, Blonder J, Lopes C, Azevedo P, Bugalho de Almeida A, Chan KC, Prieto DA, Issaq H, Veenstra TD, Penque D.

J Proteomics. 2012 Dec 5;76 Spec No.:259-69. doi: 10.1016/j.jprot.2012.04.008. Epub 2012 Apr 17.

PMID:
22538302
10.

Proteomic profiling of H-Ras-G12V induced hypertrophic cardiomyopathy in transgenic mice using comparative LC-MS analysis of thin fresh-frozen tissue sections.

Wei BR, Simpson RM, Johann DJ, Dwyer JE, Prieto DA, Kumar M, Ye X, Luke B, Shive HR, Webster JD, Hoover SB, Veenstra TD, Blonder J.

J Proteome Res. 2012 Mar 2;11(3):1561-70. doi: 10.1021/pr200612y. Epub 2012 Feb 6.

PMID:
22214408
11.

Profiling solid tumor heterogeneity by LCM and biological MS of fresh-frozen tissue sections.

Johann DJ, Mukherjee S, Prieto DA, Veenstra TD, Blonder J.

Methods Mol Biol. 2011;755:95-106. doi: 10.1007/978-1-61779-163-5_8.

PMID:
21761297
12.

Optimized method for computing (18)O/(16)O ratios of differentially stable-isotope labeled peptides in the context of postdigestion (18)O exchange/labeling.

Ye X, Luke BT, Johann DJ Jr, Ono A, Prieto DA, Chan KC, Issaq HJ, Veenstra TD, Blonder J.

Anal Chem. 2010 Jul 1;82(13):5878-86. doi: 10.1021/ac101284c.

13.

Combined blood/tissue analysis for cancer biomarker discovery: application to renal cell carcinoma.

Johann DJ Jr, Wei BR, Prieto DA, Chan KC, Ye X, Valera VA, Simpson RM, Rudnick PA, Xiao Z, Issaq HJ, Linehan WM, Stein SE, Veenstra TD, Blonder J.

Anal Chem. 2010 Mar 1;82(5):1584-8. doi: 10.1021/ac902204k.

14.

[Sporangia ontogeny and sporogenesis of the lycopodium Huperzia brevifolia (Lycopodiaceae) from the high mountains of Colombia].

Barón EJ, Landazábal LV, Ballesteros HG, Prieto DA, Hleap JS.

Rev Biol Trop. 2009 Dec;57(4):1141-52. Spanish.

PMID:
20073340
15.

Engineered human antibody constant domains with increased stability.

Gong R, Vu BK, Feng Y, Prieto DA, Dyba MA, Walsh JD, Prabakaran P, Veenstra TD, Tarasov SG, Ishima R, Dimitrov DS.

J Biol Chem. 2009 May 22;284(21):14203-10. doi: 10.1074/jbc.M900769200. Epub 2009 Mar 23.

16.

Approaching solid tumor heterogeneity on a cellular basis by tissue proteomics using laser capture microdissection and biological mass spectrometry.

Johann DJ, Rodriguez-Canales J, Mukherjee S, Prieto DA, Hanson JC, Emmert-Buck M, Blonder J.

J Proteome Res. 2009 May;8(5):2310-8. doi: 10.1021/pr8009403.

17.

Del-1, an endogenous leukocyte-endothelial adhesion inhibitor, limits inflammatory cell recruitment.

Choi EY, Chavakis E, Czabanka MA, Langer HF, Fraemohs L, Economopoulou M, Kundu RK, Orlandi A, Zheng YY, Prieto DA, Ballantyne CM, Constant SL, Aird WC, Papayannopoulou T, Gahmberg CG, Udey MC, Vajkoczy P, Quertermous T, Dimmeler S, Weber C, Chavakis T.

Science. 2008 Nov 14;322(5904):1101-4. doi: 10.1126/science.1165218. Erratum in: Science. 2009 Aug 21;325(5943):946.

18.

Proteomic analysis of traumatic brain injury: the search for biomarkers.

Prieto DA, Ye X, Veenstra TD.

Expert Rev Proteomics. 2008 Apr;5(2):283-91. doi: 10.1586/14789450.5.2.283. Review.

PMID:
18466057
19.

Increased serum levels of complement C3a anaphylatoxin indicate the presence of colorectal tumors.

Habermann JK, Roblick UJ, Luke BT, Prieto DA, Finlay WJ, Podust VN, Roman JM, Oevermann E, Schiedeck T, Homann N, Duchrow M, Conrads TP, Veenstra TD, Burt SK, Bruch HP, Auer G, Ried T.

Gastroenterology. 2006 Oct;131(4):1020-9; quiz 1284.

20.

Identification of the SELDI ProteinChip human serum retentate by microcapillary liquid chromatography-tandem mass spectrometry.

Zhou M, Prieto DA, Lucas DA, Chan KC, Issaq HJ, Veenstra TD, Conrads TP.

J Proteome Res. 2006 Sep;5(9):2207-16.

PMID:
16944932
21.

Liquid Tissue: proteomic profiling of formalin-fixed tissues.

Prieto DA, Hood BL, Darfler MM, Guiel TG, Lucas DA, Conrads TP, Veenstra TD, Krizman DB.

Biotechniques. 2005 Jun;Suppl:32-5.

22.

Proteomic patterns for early cancer detection.

Veenstra TD, Prieto DA, Conrads TP.

Drug Discov Today. 2004 Oct 15;9(20):889-97. Review.

PMID:
15475322
23.

The use of urine proteomic and metabonomic patterns for the diagnosis of interstitial cystitis and bacterial cystitis.

Van QN, Klose JR, Lucas DA, Prieto DA, Luke B, Collins J, Burt SK, Chmurny GN, Issaq HJ, Conrads TP, Veenstra TD, Keay SK.

Dis Markers. 2003-2004;19(4-5):169-83.

24.

Organic solvent extraction of proteins and peptides from serum as an effective sample preparation for detection and identification of biomarkers by mass spectrometry.

Chertov O, Biragyn A, Kwak LW, Simpson JT, Boronina T, Hoang VM, Prieto DA, Conrads TP, Veenstra TD, Fisher RJ.

Proteomics. 2004 Apr;4(4):1195-203.

PMID:
15048999
25.

Characterization of the low molecular weight human serum proteome.

Tirumalai RS, Chan KC, Prieto DA, Issaq HJ, Conrads TP, Veenstra TD.

Mol Cell Proteomics. 2003 Oct;2(10):1096-103. Epub 2003 Aug 13.

26.

SELDI-TOF MS for diagnostic proteomics.

Issaq HJ, Conrads TP, Prieto DA, Tirumalai R, Veenstra TD.

Anal Chem. 2003 Apr 1;75(7):148A-155A. No abstract available.

PMID:
12705580
27.

SELDI-TOF MS for diagnostic proteomics.

Issaq HJ, Conrads TP, Prieto DA, Tirumalai R, Veenstra TD.

Anal Chem. 2003 Apr 1;75(7):148A-55A. doi: 10.1021/ac031249c. No abstract available.

PMID:
19530659
28.

Increased peripheral expansion of naive CD4+ T cells in vivo after IL-2 treatment of patients with HIV infection.

Natarajan V, Lempicki RA, Sereti I, Badralmaa Y, Adelsberger JW, Metcalf JA, Prieto DA, Stevens R, Baseler MW, Kovacs JA, Lane HC.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10712-7. Epub 2002 Jul 29.

29.

Separation and purification of plasmid mixtures by continuous elution electrophoresis.

Prieto DA, Harvey LK, Nelson EL.

Biotechniques. 2000 Dec;29(6):1204-6. No abstract available.

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